Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TCAF1P1 Gene

Aliases for TCAF1P1 Gene

  • TRPM8 Channel Associated Factor 1 Pseudogene 1 2 3 5
  • Family With Sequence Similarity 115, Member B (Pseudogene) 2 3
  • Family With Sequence Similarity 115, Member A Pseudogene 3
  • TRPM8 Channel-Associated Factor 1 Pseudogene 1 2
  • Family With Sequence Similarity 115, Member B 2
  • FAM115B 3

External Ids for TCAF1P1 Gene

Previous HGNC Symbols for TCAF1P1 Gene

  • FAM115B

Summaries for TCAF1P1 Gene

GeneCards Summary for TCAF1P1 Gene

TCAF1P1 (TRPM8 Channel Associated Factor 1 Pseudogene 1) is a Pseudogene.

Additional gene information for TCAF1P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCAF1P1 Gene

Genomics for TCAF1P1 Gene

GeneHancer (GH) Regulatory Elements for TCAF1P1 Gene

Promoters and enhancers for TCAF1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I143378 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 4.2 -211.8 -211844 15.9 HDGF PKNOX1 FOXA2 SMAD1 ARNT MLX ARID4B SIN3A YBX1 ZNF2 ZYX CASP2 LOC154761 OR2A1 RN7SL535P EPHA1-AS1 EPHA1 TCAF2 CLCN1 HINT1P1
GH07I142805 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 4.7 -789.3 -789301 5.7 HDGF PKNOX1 SMAD1 IRF4 NCOA2 TCF12 GATA2 ZNF143 ATF7 FOS TRBV30 TRPV6 GSTK1 EPHB6 TCAF1P1 TRPV5 CASP2 GC07M142813 TRBC2 TRB
GH07I144534 Enhancer 0.6 ENCODE 4.9 +936.5 936543 0.8 SOX5 SOX13 ELF1 RARA GABPA NFIL3 SP1 CEBPA CREB1 POU5F1 TCAF1P1 RNU6ATAC40P EEF1A1P10 TPK1
GH07I143602 Enhancer 0.2 dbSUPER 0.4 +7.3 7312 4.9 GC07P143912 TCAF1P1 LOC101928466
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TCAF1P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TCAF1P1 Gene

Genomic Locations for TCAF1P1 Gene
chr7:143,598,038-143,609,179
(GRCh38/hg38)
Size:
11,142 bases
Orientation:
Plus strand
chr7:143,295,130-143,306,072
(GRCh37/hg19)

Genomic View for TCAF1P1 Gene

Genes around TCAF1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TCAF1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TCAF1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCAF1P1 Gene

Proteins for TCAF1P1 Gene

Post-translational modifications for TCAF1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TCAF1P1 Gene

Domains & Families for TCAF1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TCAF1P1 Gene

Function for TCAF1P1 Gene

Phenotypes From GWAS Catalog for TCAF1P1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TCAF1P1 Gene

Localization for TCAF1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TCAF1P1 Gene

Pathways & Interactions for TCAF1P1 Gene

SuperPathways for TCAF1P1 Gene

No Data Available

Interacting Proteins for TCAF1P1 Gene

Gene Ontology (GO) - Biological Process for TCAF1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TCAF1P1 Gene

Drugs & Compounds for TCAF1P1 Gene

No Compound Related Data Available

Transcripts for TCAF1P1 Gene

mRNA/cDNA for TCAF1P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TCAF1P1 Gene

No ASD Table

Relevant External Links for TCAF1P1 Gene

GeneLoc Exon Structure for
TCAF1P1
ECgene alternative splicing isoforms for
TCAF1P1

Expression for TCAF1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TCAF1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of TCAF1P1 Gene:

TCAF1P1
genes like me logo Genes that share expression patterns with TCAF1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TCAF1P1 Gene

Orthologs for TCAF1P1 Gene

Evolution for TCAF1P1 Gene

ENSEMBL:
Gene Tree for TCAF1P1 (if available)
TreeFam:
Gene Tree for TCAF1P1 (if available)

No data available for Orthologs for TCAF1P1 Gene

Paralogs for TCAF1P1 Gene

No data available for Paralogs for TCAF1P1 Gene

Variants for TCAF1P1 Gene

Additional Variant Information for TCAF1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TCAF1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TCAF1P1 Gene

Disorders for TCAF1P1 Gene

No disorders were found for TCAF1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TCAF1P1 Gene

Publications for TCAF1P1 Gene

  1. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 3 58

Products for TCAF1P1 Gene

Sources for TCAF1P1 Gene

Content
Loading form....