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Aliases for TBX5-AS1 Gene

Subcategory (RNA class) for TBX5-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for TBX5-AS1 Gene

  • TBX5 Antisense RNA 1 2 3
  • TBX5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TBX5-AS1 Gene

ORGUL Members for TBX5-AS1 Gene

Previous GeneCards Identifiers for TBX5-AS1 Gene

  • GC12P114845

Summaries for TBX5-AS1 Gene

GeneCards Summary for TBX5-AS1 Gene

TBX5-AS1 (TBX5 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TBX5-AS1 Gene

Genomics for TBX5-AS1 Gene

Genomic Location for TBX5-AS1 Gene

Start:
114,408,191 bp from pter
End:
114,412,832 bp from pter
Size:
4,642 bases
Orientation:
Plus strand

Genomic View for TBX5-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TBX5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBX5-AS1 Gene

No data available for Regulatory Elements for TBX5-AS1 Gene

Proteins for TBX5-AS1 Gene

Post-translational modifications for TBX5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TBX5-AS1 Gene

Domains for TBX5-AS1 Gene

Gene Families for TBX5-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TBX5-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TBX5-AS1 Gene

Function for TBX5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TBX5-AS1 Gene

Localization for TBX5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TBX5-AS1 Gene

Pathways for TBX5-AS1 Gene

SuperPathways for TBX5-AS1 Gene

No Data Available

Interacting Proteins for TBX5-AS1 Gene

Gene Ontology (GO) - Biological Process for TBX5-AS1 Gene

None

No data available for Pathways by source for TBX5-AS1 Gene

Transcripts for TBX5-AS1 Gene

mRNA/cDNA for TBX5-AS1 Gene

(3) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TBX5-AS1 Gene

TBX5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TBX5-AS1 Gene

No ASD Table

Relevant External Links for TBX5-AS1 Gene

GeneLoc Exon Structure for
TBX5-AS1
ECgene alternative splicing isoforms for
TBX5-AS1

Expression for TBX5-AS1 Gene

mRNA expression in normal human tissues for TBX5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TBX5-AS1 Gene

This gene is overexpressed in Heart - Atrial Appendage (15.8), Lung (9.3), Esophagus - Muscularis (6.6), Heart - Left Ventricle (6.0), and Esophagus - Gastroesophageal Junction (4.0).

SOURCE GeneReport for Unigene cluster for TBX5-AS1 Gene Hs.567915

genes like me logo Genes that share expressions with TBX5-AS1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for TBX5-AS1 Gene

Orthologs for TBX5-AS1 Gene

Evolution for TBX5-AS1 Gene

ENSEMBL:
Gene Tree for TBX5-AS1 (if available)
TreeFam:
Gene Tree for TBX5-AS1 (if available)

No data available for Orthologs for TBX5-AS1 Gene

Paralogs for TBX5-AS1 Gene

No data available for Paralogs for TBX5-AS1 Gene

Variants for TBX5-AS1 Gene

Sequence variations from dbSNP and Humsavar for TBX5-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs1248068 -- 114,411,390(-) TAAAG(C/T)GCTTT nc-transcript-variant
rs1996821 -- 114,411,432(+) AGTCT(A/G)TGCTG nc-transcript-variant
rs2295233 -- 114,413,261(-) GAAGC(A/G)GGAGC downstream-variant-500B
rs2295234 -- 114,412,864(-) CCCCC(A/T)CCCCT downstream-variant-500B
rs2295235 -- 114,412,819(-) GAAAT(A/G)TTATT nc-transcript-variant

Relevant External Links for TBX5-AS1 Gene

HapMap Linkage Disequilibrium report
TBX5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TBX5-AS1 Gene

Disorders for TBX5-AS1 Gene

No disorders were found for TBX5-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for TBX5-AS1 Gene

Publications for TBX5-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for TBX5-AS1 Gene

Sources for TBX5-AS1 Gene

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