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Aliases for TBX5-AS1 Gene

Subcategory (RNA class) for TBX5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TBX5-AS1 Gene

  • TBX5 Antisense RNA 1 2 3 5
  • TBX5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TBX5-AS1 Gene

Previous GeneCards Identifiers for TBX5-AS1 Gene

  • GC12P114845

Summaries for TBX5-AS1 Gene

GeneCards Summary for TBX5-AS1 Gene

TBX5-AS1 (TBX5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TBX5-AS1 Gene

Genomics for TBX5-AS1 Gene

Regulatory Elements for TBX5-AS1 Gene

Enhancers for TBX5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F114395 1.1 FANTOM5 Ensembl ENCODE 0.8 -2.9 -2891 20.3 ZFP64 RAD21 ZNF48 RARA ZNF121 FOS ZNF680 ZBTB11 REST ZNF623 RBM19 TBX5 TBX5-AS1 GC12M114376
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TBX5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TBX5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000437435 -1591 7200 SOX13 CTCF SUZ12 RAD21 ZNF48 TEAD3 ZNF664 ZNF121 ZSCAN29 EZH2

Genomic Location for TBX5-AS1 Gene

Chromosome:
12
Start:
114,408,191 bp from pter
End:
114,412,832 bp from pter
Size:
4,642 bases
Orientation:
Plus strand

Genomic View for TBX5-AS1 Gene

Genes around TBX5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TBX5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TBX5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBX5-AS1 Gene

Proteins for TBX5-AS1 Gene

Post-translational modifications for TBX5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TBX5-AS1 Gene

Domains & Families for TBX5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TBX5-AS1 Gene

Function for TBX5-AS1 Gene

Phenotypes for TBX5-AS1 Gene

GenomeRNAi human phenotypes for TBX5-AS1:
genes like me logo Genes that share phenotypes with TBX5-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TBX5-AS1 Gene

Localization for TBX5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TBX5-AS1 Gene

Pathways & Interactions for TBX5-AS1 Gene

SuperPathways for TBX5-AS1 Gene

No Data Available

Interacting Proteins for TBX5-AS1 Gene

Gene Ontology (GO) - Biological Process for TBX5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TBX5-AS1 Gene

Transcripts for TBX5-AS1 Gene

mRNA/cDNA for TBX5-AS1 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TBX5-AS1 Gene

TBX5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TBX5-AS1 Gene

No ASD Table

Relevant External Links for TBX5-AS1 Gene

GeneLoc Exon Structure for
TBX5-AS1
ECgene alternative splicing isoforms for
TBX5-AS1

Expression for TBX5-AS1 Gene

mRNA expression in normal human tissues for TBX5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TBX5-AS1 Gene

This gene is overexpressed in Heart - Atrial Appendage (x15.8), Lung (x9.3), Esophagus - Muscularis (x6.6), Heart - Left Ventricle (x6.0), and Esophagus - Gastroesophageal Junction (x4.0).

SOURCE GeneReport for Unigene cluster for TBX5-AS1 Gene:

Hs.567915
genes like me logo Genes that share expression patterns with TBX5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TBX5-AS1 Gene

Orthologs for TBX5-AS1 Gene

Evolution for TBX5-AS1 Gene

ENSEMBL:
Gene Tree for TBX5-AS1 (if available)
TreeFam:
Gene Tree for TBX5-AS1 (if available)

No data available for Orthologs for TBX5-AS1 Gene

Paralogs for TBX5-AS1 Gene

No data available for Paralogs for TBX5-AS1 Gene

Variants for TBX5-AS1 Gene

Sequence variations from dbSNP and Humsavar for TBX5-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs11067101 -- 114,406,398(+) AACGC(A/G)GTCGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs11067102 -- 114,411,710(+) CCAGT(A/T)TAATC nc-transcript-variant
rs111233014 -- 114,407,995(+) TCTCC(A/G)ACAAA upstream-variant-2KB, utr-variant-5-prime
rs111732411 -- 114,408,812(+) CACGA(A/C)GACTA intron-variant, upstream-variant-2KB
rs112877900 -- 114,406,712(+) GTGGG(A/G/T)CCACC intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for TBX5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv455720 CNV loss 19166990
nsv560292 CNV loss 21841781
nsv832518 CNV loss 17160897
nsv952486 CNV deletion 24416366

Relevant External Links for TBX5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TBX5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TBX5-AS1 Gene

Disorders for TBX5-AS1 Gene

Relevant External Links for TBX5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TBX5-AS1

No disorders were found for TBX5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TBX5-AS1 Gene

Publications for TBX5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for TBX5-AS1 Gene

Sources for TBX5-AS1 Gene

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