Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TBX5-AS1 Gene

Subcategory (RNA class) for TBX5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TBX5-AS1 Gene

  • TBX5 Antisense RNA 1 2 3 5
  • TBX5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TBX5-AS1 Gene

Previous GeneCards Identifiers for TBX5-AS1 Gene

  • GC12P114845

Summaries for TBX5-AS1 Gene

GeneCards Summary for TBX5-AS1 Gene

TBX5-AS1 (TBX5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TBX5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TBX5-AS1 Gene

Genomics for TBX5-AS1 Gene

Regulatory Elements for TBX5-AS1 Gene

Enhancers for TBX5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H114438 0.6 dbSUPER 11.8 +34.2 34152 6.8 SUZ12 CEBPB CEBPG ZFHX2 ZNF366 EGR1 HDAC2 ZNF512 CTBP2 EZH2 TBX5 TBX5-AS1 GC12M114444 GC12M114409
GH12H114395 1.3 FANTOM5 ENCODE dbSUPER 0.7 -2.9 -2891 20.3 CTCF KLF1 NFIB SUZ12 ETS1 E2F1 ZFHX2 POLR2A ZSCAN29 EZH2 TBX5 TBX5-AS1 GC12M114376
GH12H114392 0.4 dbSUPER 0.4 -14.6 -14609 2.7 SCRT2 TBX5-AS1 GC12M114376
GH12H114391 0.2 dbSUPER 0.4 -16.5 -16465 0.8 GC12M114376 TBX5-AS1
GH12H114384 0.2 dbSUPER 0.3 -23.0 -22953 1.2 GC12M114376 TBX5-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TBX5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TBX5-AS1 Gene

Genomic Locations for TBX5-AS1 Gene
4,642 bases
Plus strand

Genomic View for TBX5-AS1 Gene

Genes around TBX5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TBX5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TBX5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBX5-AS1 Gene

Proteins for TBX5-AS1 Gene

Post-translational modifications for TBX5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TBX5-AS1 Gene

Domains & Families for TBX5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TBX5-AS1 Gene

Function for TBX5-AS1 Gene

Phenotypes for TBX5-AS1 Gene

GenomeRNAi human phenotypes for TBX5-AS1:
genes like me logo Genes that share phenotypes with TBX5-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TBX5-AS1 Gene

Localization for TBX5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TBX5-AS1 Gene

Pathways & Interactions for TBX5-AS1 Gene

SuperPathways for TBX5-AS1 Gene

No Data Available

Interacting Proteins for TBX5-AS1 Gene

Gene Ontology (GO) - Biological Process for TBX5-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TBX5-AS1 Gene

Drugs & Compounds for TBX5-AS1 Gene

No Compound Related Data Available

Transcripts for TBX5-AS1 Gene

mRNA/cDNA for TBX5-AS1 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TBX5-AS1 Gene

TBX5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TBX5-AS1 Gene

No ASD Table

Relevant External Links for TBX5-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TBX5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TBX5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TBX5-AS1 Gene

This gene is overexpressed in Heart - Atrial Appendage (x15.8), Lung (x9.3), Esophagus - Muscularis (x6.6), Heart - Left Ventricle (x6.0), and Esophagus - Gastroesophageal Junction (x4.0).

SOURCE GeneReport for Unigene cluster for TBX5-AS1 Gene:

genes like me logo Genes that share expression patterns with TBX5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TBX5-AS1 Gene

Orthologs for TBX5-AS1 Gene

Evolution for TBX5-AS1 Gene

Gene Tree for TBX5-AS1 (if available)
Gene Tree for TBX5-AS1 (if available)

No data available for Orthologs for TBX5-AS1 Gene

Paralogs for TBX5-AS1 Gene

No data available for Paralogs for TBX5-AS1 Gene

Variants for TBX5-AS1 Gene

Sequence variations from dbSNP and Humsavar for TBX5-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs115599823 Likely benign 114,408,320(+) AGATC(A/C/G)ACTTT intron-variant, utr-variant-5-prime
rs148864662 Likely benign 114,408,224(-) CCGGA(C/G)GTCTT nc-transcript-variant, utr-variant-5-prime
rs186472610 Likely benign 114,408,030(+) GCATA(A/C)CCCAG upstream-variant-2KB, utr-variant-5-prime
rs186960328 Likely benign 114,408,439(+) TAAGG(C/T)ATGGG intron-variant, utr-variant-5-prime
rs575879858 Likely benign 114,408,256(+) CATAA(A/G/T)CCAAC nc-transcript-variant, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for TBX5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv952486 CNV deletion 24416366
nsv832518 CNV loss 17160897
nsv560292 CNV loss 21841781
nsv455720 CNV loss 19166990

Relevant External Links for TBX5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TBX5-AS1 Gene

Disorders for TBX5-AS1 Gene

Relevant External Links for TBX5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for TBX5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TBX5-AS1 Gene

Publications for TBX5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for TBX5-AS1 Gene

Sources for TBX5-AS1 Gene

Loading form....