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Aliases for TBL2 Gene

Aliases for TBL2 Gene

  • Transducin (Beta)-Like 2 2 3 5
  • Williams-Beuren Syndrome Chromosome Region 13 2 3
  • WS Beta-Transducin Repeats Protein 3 4
  • WS-BetaTRP 3 4
  • WBSCR13 3 4
  • Williams-Beuren Syndrome Chromosomal Region 13 Protein 4
  • Transducin -Like 2 3

External Ids for TBL2 Gene

Previous GeneCards Identifiers for TBL2 Gene

  • GC07M071624
  • GC07M072382
  • GC07M072396
  • GC07M072428
  • GC07M072621
  • GC07M072983
  • GC07M068865

Summaries for TBL2 Gene

Entrez Gene Summary for TBL2 Gene

  • This gene encodes a member of the beta-transducin protein family. Most proteins of the beta-transducin family are involved in regulatory functions. This protein is possibly involved in some intracellular signaling pathway. This gene is deleted in Williams-Beuren syndrome, a developmental disorder caused by deletion of multiple genes at 7q11.23. [provided by RefSeq, Jul 2008]

GeneCards Summary for TBL2 Gene

TBL2 (Transducin (Beta)-Like 2) is a Protein Coding gene. Diseases associated with TBL2 include williams-beuren syndrome. GO annotations related to this gene include poly(A) RNA binding and phosphoprotein binding.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TBL2 Gene

Genomics for TBL2 Gene

Regulatory Elements for TBL2 Gene

Promoters for TBL2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TBL2 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the TBL2 gene promoter:

Genomic Location for TBL2 Gene

Chromosome:
7
Start:
73,568,932 bp from pter
End:
73,578,791 bp from pter
Size:
9,860 bases
Orientation:
Minus strand

Genomic View for TBL2 Gene

Genes around TBL2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TBL2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TBL2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBL2 Gene

Proteins for TBL2 Gene

  • Protein details for TBL2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y4P3-TBL2_HUMAN
    Recommended name:
    Transducin beta-like protein 2
    Protein Accession:
    Q9Y4P3
    Secondary Accessions:
    • Q9UQE2

    Protein attributes for TBL2 Gene

    Size:
    447 amino acids
    Molecular mass:
    49798 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAD28083.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for TBL2 Gene

Proteomics data for TBL2 Gene at MOPED

Post-translational modifications for TBL2 Gene

  • Ubiquitination at Lys 120
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for TBL2 Gene

Domains & Families for TBL2 Gene

Gene Families for TBL2 Gene

Suggested Antigen Peptide Sequences for TBL2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y4P3

UniProtKB/Swiss-Prot:

TBL2_HUMAN :
  • Contains 7 WD repeats.
Similarity:
  • Contains 7 WD repeats.
genes like me logo Genes that share domains with TBL2: view

Function for TBL2 Gene

Molecular function for TBL2 Gene

GENATLAS Biochemistry:
transducin (beta)-like 2,expressed in heart,brain,placenta,testis,skeletal muscle and pancreas,located in the Williams commonly deleted region

Gene Ontology (GO) - Molecular Function for TBL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0019901 protein kinase binding IPI 25393282
GO:0031369 translation initiation factor binding IPI 25393282
genes like me logo Genes that share ontologies with TBL2: view

Phenotypes for TBL2 Gene

genes like me logo Genes that share phenotypes with TBL2: view

Human Phenotype Ontology for TBL2 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

  • Taconic Biosciences Mouse Models for TBL2

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for TBL2 Gene

Localization for TBL2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TBL2 Gene COMPARTMENTS Subcellular localization image for TBL2 gene
Compartment Confidence
cytosol 3
endoplasmic reticulum 2
extracellular 2
mitochondrion 2
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for TBL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030176 integral component of endoplasmic reticulum membrane NAS 25393282
genes like me logo Genes that share ontologies with TBL2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for TBL2 Gene

Pathways & Interactions for TBL2 Gene

SuperPathways for TBL2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TBL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0042149 cellular response to glucose starvation IMP 25393282
GO:0071456 cellular response to hypoxia IMP 25393282
genes like me logo Genes that share ontologies with TBL2: view

No data available for Pathways by source and SIGNOR curated interactions for TBL2 Gene

Drugs & Compounds for TBL2 Gene

No Compound Related Data Available

Transcripts for TBL2 Gene

Unigene Clusters for TBL2 Gene

Transducin (beta)-like 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TBL2 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f · 1g · 1h · 1i · 1j ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b · 5c · 5d ^ 6a · 6b · 6c · 6d · 6e ^ 7 ^ 8 ^ 9 ^
SP1: - - - - - - - - - - -
SP2: - - - - - - - - - - - - -
SP3: - - - - - - - - - -
SP4: - - - - - - - - - - -
SP5: - - - - - - - - - - -
SP6: - - -
SP7: - - - - - - - - - -
SP8: - - - - - -
SP9: - - - - - - - - - - - - - - - - -
SP10: - - - - - - - - - - - - - - - - -
SP11: - - - - - - - - -
SP12: - - - - - -
SP13: - - - - -
SP14: - - - - - - - -
SP15: - - - -
SP16: - - -
SP17:
SP18:

ExUns: 10a · 10b · 10c ^ 11a · 11b · 11c ^ 12a · 12b · 12c ^ 13a · 13b
SP1: - - - -
SP2: - - - -
SP3: - - - -
SP4:
SP5: - - - - -
SP6:
SP7:
SP8:
SP9: - - - -
SP10: - - - - - -
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:
SP17:
SP18:

Relevant External Links for TBL2 Gene

GeneLoc Exon Structure for
TBL2
ECgene alternative splicing isoforms for
TBL2

Expression for TBL2 Gene

mRNA expression in normal human tissues for TBL2 Gene

mRNA differential expression in normal tissues according to GTEx for TBL2 Gene

This gene is overexpressed in Testis (x9.0).

Protein differential expression in normal tissues from HIPED for TBL2 Gene

This gene is overexpressed in Nasal epithelium (20.7) and Islet of Langerhans (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for TBL2 Gene



SOURCE GeneReport for Unigene cluster for TBL2 Gene Hs.647044

genes like me logo Genes that share expression patterns with TBL2: view

Protein tissue co-expression partners for TBL2 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for TBL2 Gene

Orthologs for TBL2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TBL2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TBL2 35
  • 99.48 (n)
  • 99.78 (a)
TBL2 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TBL2 36
  • 89 (a)
OneToOne
TBL2 35
  • 88.34 (n)
  • 89.24 (a)
dog
(Canis familiaris)
Mammalia TBL2 35
  • 88.34 (n)
  • 90.58 (a)
TBL2 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tbl2 36
  • 88 (a)
OneToOne
Tbl2 16
Tbl2 35
  • 84.99 (n)
  • 88.24 (a)
oppossum
(Monodelphis domestica)
Mammalia TBL2 36
  • 68 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TBL2 36
  • 57 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tbl2 35
  • 85.37 (n)
  • 88.91 (a)
chicken
(Gallus gallus)
Aves TBL2 36
  • 70 (a)
OneToOne
TBL2 35
  • 72.34 (n)
  • 70.33 (a)
lizard
(Anolis carolinensis)
Reptilia TBL2 36
  • 72 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia tbl2-prov 35
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.437 35
tbl2 35
  • 66.67 (n)
  • 71.39 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.4643 35
zebrafish
(Danio rerio)
Actinopterygii tbl2 36
  • 62 (a)
OneToMany
tbl2 36
  • 62 (a)
OneToMany
Dr.10417 35
tbl2 35
  • 66.27 (n)
  • 63.86 (a)
worm
(Caenorhabditis elegans)
Secernentea F46C5.9 35
  • 43.08 (n)
  • 31.07 (a)
F46C5.9 36
  • 27 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons AT4G00090 35
  • 42.68 (n)
  • 33.23 (a)
rice
(Oryza sativa)
Liliopsida Os03g0858400 35
  • 43.22 (n)
  • 29.34 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 46 (a)
OneToOne
Species with no ortholog for TBL2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TBL2 Gene

ENSEMBL:
Gene Tree for TBL2 (if available)
TreeFam:
Gene Tree for TBL2 (if available)

Paralogs for TBL2 Gene

genes like me logo Genes that share paralogs with TBL2: view

No data available for Paralogs for TBL2 Gene

Variants for TBL2 Gene

Sequence variations from dbSNP and Humsavar for TBL2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs35607697 - 73,570,818(-) CCCAG(A/G)TCTTG reference, missense
rs2079480 -- 73,569,757(-) ATCTT(G/T)TTTAA utr-variant-3-prime
rs2079481 -- 73,569,562(-) ATATG(G/T)CAAGG utr-variant-3-prime
rs10225949 -- 73,578,424(+) CAGGC(G/T)GGCCG upstream-variant-2KB, reference, synonymous-codon, utr-variant-5-prime
rs11771713 -- 73,576,296(+) ccaaa(A/C/G)tgctg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TBL2 Gene

Variant ID Type Subtype PubMed ID
dgv7325n71 CNV Loss 21882294
nsv888369 CNV Loss 21882294
nsv831028 CNV Loss 17160897

Variation tolerance for TBL2 Gene

Residual Variation Intolerance Score: 21% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.05; 60.60% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TBL2 Gene

HapMap Linkage Disequilibrium report
TBL2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TBL2 Gene

Disorders for TBL2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TBL2 Gene - From: Orphanet, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
williams-beuren syndrome
  • fanconi schlesinger syndrome
- elite association - COSMIC cancer census association via MalaCards
Search TBL2 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

TBL2_HUMAN
  • Note=TBL2 is located in the Williams-Beuren syndrome (WBS) critical region. WBS results from a hemizygous deletion of several genes on chromosome 7q11.23, thought to arise as a consequence of unequal crossing over between highly homologous low-copy repeat sequences flanking the deleted region. Haploinsufficiency of TBL2 may be the cause of certain cardiovascular and musculo-skeletal abnormalities observed in the disease.

Relevant External Links for TBL2

Genetic Association Database (GAD)
TBL2
Human Genome Epidemiology (HuGE) Navigator
TBL2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TBL2
genes like me logo Genes that share disorders with TBL2: view

No data available for Genatlas for TBL2 Gene

Publications for TBL2 Gene

  1. TBL2, a novel transducin family member in the WBS deletion: characterization of the complete sequence, genomic structure, transcriptional variants and the mouse ortholog. (PMID: 10575226) Perez Jurado L.A. … Cruces J. (Cytogenet. Cell Genet. 1999) 2 3 4 23 67
  2. Complete physical map of the common deletion region in Williams syndrome and identification and characterization of three novel genes. (PMID: 9860302) Meng X. … Keating M.T. (Hum. Genet. 1998) 2 3
  3. Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation. (PMID: 25921289) Emdal K.B. … Olsen J.V. (Sci Signal 2015) 3
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  5. The endoplasmic reticulum-localized protein TBL2 interacts with the 60S ribosomal subunit. (PMID: 25976671) Tsukumo Y. … Tomida A. (Biochem. Biophys. Res. Commun. 2015) 3

Products for TBL2 Gene

Sources for TBL2 Gene

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