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Aliases for TBKBP1 Gene

Aliases for TBKBP1 Gene

  • TBK1 Binding Protein 1 2 3 5
  • SINTBAD 3 4
  • TANK-Binding Kinase 1-Binding Protein 1 3
  • TBK1-Binding Protein 1 4
  • ProSAPiP2 3
  • KIAA0775 4

External Ids for TBKBP1 Gene

Previous GeneCards Identifiers for TBKBP1 Gene

  • GC17P043127
  • GC17P045772
  • GC17P041141

Summaries for TBKBP1 Gene

Entrez Gene Summary for TBKBP1 Gene

  • TBKBP1 is an adaptor protein that binds to TBK1 (MIM 604834) and is part of the interaction network in the TNF (MIM 191160)/NFKB (see MIM 164011) pathway (Bouwmeester et al., 2004 [PubMed 14743216]).[supplied by OMIM, Mar 2008]

GeneCards Summary for TBKBP1 Gene

TBKBP1 (TBK1 Binding Protein 1) is a Protein Coding gene. Among its related pathways are RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways and NF-kappaB Signaling.

UniProtKB/Swiss-Prot for TBKBP1 Gene

  • Adapter protein which constitutively binds TBK1 and IKBKE playing a role in antiviral innate immunity.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TBKBP1 Gene

Genomics for TBKBP1 Gene

Regulatory Elements for TBKBP1 Gene

Enhancers for TBKBP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F047700 1.1 FANTOM5 Ensembl ENCODE 48.8 +10.9 10921 9.3 HDGF PKNOX1 ARNT FEZF1 ZNF2 CBX5 ZNF263 MCM3 SP3 SP5 TBKBP1 ENSG00000253347 LRRC37A17P OSBPL7 MRPL45P2 SCRN2 ENSG00000264701 KPNB1 TBX21 EFCAB13
GH17F047692 1.2 FANTOM5 ENCODE 47.6 +0.9 910 5.2 HDGF PKNOX1 ZFP64 ARID4B SIN3A ZNF48 GLIS2 FOS ZNF263 SP3 TBKBP1 MRPL45P2 ENSG00000264701 RPS7P11 SCRN2 EFCAB13 NPEPPS TBX21 OSBPL7 CDK5RAP3
GH17F047699 0.2 ENCODE 47.2 +4.9 4945 0.2 HDGF CTCF RAD21 ZKSCAN1 PATZ1 ZNF143 ZNF207 SMC3 PRDM10 ZNF600 TBKBP1 ENSG00000264243 TBX21
GH17F047717 0.2 ENCODE 44.7 +23.2 23150 0.4 HDGF MTA2 ZNF133 EBF1 TBX21 ZIC2 GLIS2 ZFHX2 IKZF1 GLIS1 TBKBP1 TBX21
GH17F047658 0.7 Ensembl ENCODE 35.7 -33.9 -33920 2.6 PAF1 CTCF MXI1 ASH2L MNT MLLT1 IRF1 SPI1 TBKBP1 OSBPL7 EFCAB13 KPNB1 ENSG00000264558
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TBKBP1 on UCSC Golden Path with GeneCards custom track

Promoters for TBKBP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001347944 635 2601 HDGF PKNOX1 ZFP64 ARID4B SIN3A ZNF48 GLIS2 FOS SP3 SP5

Genomic Location for TBKBP1 Gene

Chromosome:
17
Start:
47,694,065 bp from pter
End:
47,712,063 bp from pter
Size:
17,999 bases
Orientation:
Plus strand

Genomic View for TBKBP1 Gene

Genes around TBKBP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TBKBP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TBKBP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBKBP1 Gene

Proteins for TBKBP1 Gene

  • Protein details for TBKBP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A7MCY6-TBKB1_HUMAN
    Recommended name:
    TANK-binding kinase 1-binding protein 1
    Protein Accession:
    A7MCY6
    Secondary Accessions:
    • B2RZG6
    • O94873
    • Q14DW3

    Protein attributes for TBKBP1 Gene

    Size:
    615 amino acids
    Molecular mass:
    67702 Da
    Quaternary structure:
    • Homodimer. May form a heterodimer with NAP1. Interacts with TKB1 and IKBKE.
    SequenceCaution:
    • Sequence=BAA34495.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for TBKBP1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TBKBP1 Gene

Post-translational modifications for TBKBP1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for TBKBP1 (TBKBP1)
  • Abcam antibodies for TBKBP1

No data available for DME Specific Peptides for TBKBP1 Gene

Domains & Families for TBKBP1 Gene

Protein Domains for TBKBP1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TBKBP1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TBKBP1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TBKBP1 Gene

Function for TBKBP1 Gene

Molecular function for TBKBP1 Gene

UniProtKB/Swiss-Prot Function:
Adapter protein which constitutively binds TBK1 and IKBKE playing a role in antiviral innate immunity.

Gene Ontology (GO) - Molecular Function for TBKBP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 14743216
genes like me logo Genes that share ontologies with TBKBP1: view
genes like me logo Genes that share phenotypes with TBKBP1: view

Animal Models for TBKBP1 Gene

MGI Knock Outs for TBKBP1:

Animal Model Products

miRNA for TBKBP1 Gene

miRTarBase miRNAs that target TBKBP1

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for TBKBP1 Gene

Localization for TBKBP1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TBKBP1 Gene COMPARTMENTS Subcellular localization image for TBKBP1 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TBKBP1 Gene

Pathways & Interactions for TBKBP1 Gene

genes like me logo Genes that share pathways with TBKBP1: view

Pathways by source for TBKBP1 Gene

1 Cell Signaling Technology pathway for TBKBP1 Gene
1 KEGG pathway for TBKBP1 Gene

Gene Ontology (GO) - Biological Process for TBKBP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0045087 innate immune response IEA --
genes like me logo Genes that share ontologies with TBKBP1: view

No data available for SIGNOR curated interactions for TBKBP1 Gene

Transcripts for TBKBP1 Gene

Unigene Clusters for TBKBP1 Gene

TBK1 binding protein 1:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TBKBP1 Gene

No ASD Table

Relevant External Links for TBKBP1 Gene

GeneLoc Exon Structure for
TBKBP1
ECgene alternative splicing isoforms for
TBKBP1

Expression for TBKBP1 Gene

mRNA expression in normal human tissues for TBKBP1 Gene

mRNA differential expression in normal tissues according to GTEx for TBKBP1 Gene

This gene is overexpressed in Whole Blood (x5.5).

Protein differential expression in normal tissues from HIPED for TBKBP1 Gene

This gene is overexpressed in Heart (68.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TBKBP1 Gene



Protein tissue co-expression partners for TBKBP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of TBKBP1 Gene:

TBKBP1

SOURCE GeneReport for Unigene cluster for TBKBP1 Gene:

Hs.94790

mRNA Expression by UniProt/SwissProt for TBKBP1 Gene:

A7MCY6-TBKB1_HUMAN
Tissue specificity: Detected in leukocytes, lung, placenta, small intestine, liver, kidney, spleen, muscle, heart, brain and at low levels in thymus.
genes like me logo Genes that share expression patterns with TBKBP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for TBKBP1 Gene

Orthologs for TBKBP1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TBKBP1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TBKBP1 34 35
  • 93.71 (n)
cow
(Bos Taurus)
Mammalia TBKBP1 34 35
  • 91.69 (n)
dog
(Canis familiaris)
Mammalia TBKBP1 34 35
  • 89.53 (n)
mouse
(Mus musculus)
Mammalia Tbkbp1 34 16 35
  • 86.54 (n)
rat
(Rattus norvegicus)
Mammalia Tbkbp1 34
  • 86.27 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia TBKBP1 35
  • 70 (a)
OneToOne
chicken
(Gallus gallus)
Aves TBKBP1 34 35
  • 72.66 (n)
lizard
(Anolis carolinensis)
Reptilia TBKBP1 35
  • 65 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tbkbp1 34
  • 63.47 (n)
zebrafish
(Danio rerio)
Actinopterygii tbkbp1 34 35
  • 58.18 (n)
Species where no ortholog for TBKBP1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TBKBP1 Gene

ENSEMBL:
Gene Tree for TBKBP1 (if available)
TreeFam:
Gene Tree for TBKBP1 (if available)

Paralogs for TBKBP1 Gene

(1) SIMAP similar genes for TBKBP1 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with TBKBP1: view

No data available for Paralogs for TBKBP1 Gene

Variants for TBKBP1 Gene

Sequence variations from dbSNP and Humsavar for TBKBP1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs10667940 -- 47,704,804(+) TCCAG(-/AA)AAGTG intron-variant
rs111238216 -- 47,698,039(+) CCATC(C/T)CTCCT intron-variant
rs111380510 -- 47,702,985(+) AAATG(C/T)GGGGG intron-variant
rs111404604 -- 47,698,668(+) CCTCC(A/G)GGATG nc-transcript-variant, reference, missense
rs111443670 -- 47,707,868(+) CCCCA(A/G)CCTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TBKBP1 Gene

Variant ID Type Subtype PubMed ID
nsv1144808 CNV deletion 24896259
nsv953919 CNV deletion 24416366
nsv9570 CNV gain 18304495

Variation tolerance for TBKBP1 Gene

Residual Variation Intolerance Score: 56.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.76; 66.57% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TBKBP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TBKBP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TBKBP1 Gene

Disorders for TBKBP1 Gene

Relevant External Links for TBKBP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TBKBP1

No disorders were found for TBKBP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TBKBP1 Gene

Publications for TBKBP1 Gene

  1. A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway. (PMID: 14743216) Bouwmeester T. … Superti-Furga G. (Nat. Cell Biol. 2004) 2 3 4 64
  2. ProSAPiP2, a novel postsynaptic density protein that interacts with ProSAP2/Shank3. (PMID: 19481056) Liebau S. … Boeckers T.M. (Biochem. Biophys. Res. Commun. 2009) 2 3 64
  3. SINTBAD, a novel component of innate antiviral immunity, shares a TBK1-binding domain with NAP1 and TANK. (PMID: 17568778) Ryzhakov G. … Randow F. (EMBO J. 2007) 3 4 64
  4. Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 9872452) Nagase T. … Ohara O. (DNA Res. 1998) 3 4 64
  5. Genetic loci associated with circulating levels of very long-chain saturated fatty acids. (PMID: 25378659) Lemaitre R.N. … Friedlander Y. (J. Lipid Res. 2015) 3 64

Products for TBKBP1 Gene

Sources for TBKBP1 Gene

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