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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TBK1 Gene

protein-coding   GIFtS: 64
GCID: GC12P064845

TANK-binding kinase 1

 Explore 20 diseases affiliated with
TBK1 via our new
 Human Malady Compendium 
Biological research products
for TBK1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
TANK-Binding Kinase 11 2 3     NF-KB-Activating Kinase2
NAK1 2 3     Serine/Threonine-Protein Kinase TBK12
T2K2 3     EC 2.7.11.13
NF-Kappa-B-Activating Kinase2 3     EC 2.7.118

External Ids:    HGNC: 115841   Entrez Gene: 291102   Ensembl: ENSG000001837357   OMIM: 6048345   UniProtKB: Q9UHD23   

Export aliases for TBK1 gene to outside databases

Previous GC identifers: GC00U990677 GC13U900006 GC12P064562 GC12P063132 GC12P061898


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for TBK1:
The NF-kappa-B (NFKB) complex of proteins is inhibited by I-kappa-B (IKB) proteins, which inactivate NFKB by trapping
it in the cytoplasm. Phosphorylation of serine residues on the IKB proteins by IKB kinases marks them for destruction
via the ubiquitination pathway, thereby allowing activation and nuclear translocation of the NFKB complex. The protein
encoded by this gene is similar to IKB kinases and can mediate NFKB activation in response to certain growth factors.
(provided by RefSeq, Oct 2010)

UniProtKB/Swiss-Prot: TBK1_HUMAN, Q9UHD2
Function: Serine/threonine kinase that plays an essential role in regulating inflammatory responses to foreign agents.
Following activation of toll-like receptors by viral or bacterial components, associates with TRAF3 and TANK and
phosphorylates interferon regulatory factors (IRFs) IRF3 and IRF7 as well as DDX3X. This activity allows subsequent
homodimerization and nuclear translocation of the IRFs leading to transcriptional activation of pro-inflammatory and
antiviral genes including IFN-alpha and IFN-beta. In order to establish such an antiviral state, TBK1 form several
different complexes whose composition depends on the type of cell and cellular stimuli. Thus, several scaffolding
molecules including FADD, TRADD, MAVS or SINTBAD can be recruited to the TBK1-containing-complexes. Under particular
conditions, functions as a NF-kappa-B effector by phosphorylating NF-kappa-B inhibitor alpha/NFKBIA, IKBKB or RELA to
translocate NF-Kappa-B to the nucleus. Restricts bacterial proliferation by phosphorylating the autophagy receptor
OPTN/Optineurin on 'Ser-177', thus enhancing LC3 binding affinity and antibacterial autophagy. Attenuates retroviral
budding by phosphorylating the endosomal sorting complex required for transport-I (ESCRT-I) subunit VPS37C.
Phosphorylates and activates AKT1. Phosphorylates Borna disease virus (BDV) P protein

Gene Wiki entry for TBK1 (TANK-binding kinase 1)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000012.11  NC_018923.1  NT_029419.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TBK1 gene promoter:
         AREB6   AP-1   ATF-2   c-Jun   Nkx2-5   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTBK1 promoter sequence
   Search SABiosciences Chromatin IP Primers for TBK1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TBK1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q14.1   Ensembl cytogenetic band:  12q14.2   HGNC cytogenetic band: 12q14.2

TBK1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TBK1 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12P064845:  view genomic region     (about GC identifiers)

Start:
64,845,660 bp from pter      End:
64,895,891 bp from pter
Size:
50,232 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: TBK1_HUMAN, Q9UHD2 (See protein sequence)
Recommended Name: Serine/threonine-protein kinase TBK1  
Size: 729 amino acids; 83642 Da
Subunit: Self-associates. Interacts with TIRAP, TANK and TRAF2. Part of a ternary complex consisting of TANK, TRAF2 and
TBK1. Interacts with AZI2; this interaction mediates TBK1 activation. Interacts with GSK3B; this interaction promotes
TBK1 self-association and autophosphorylation. Interacts with SIKE1; SIKE1 is associated with TBK1 under physiological
condition and dissociated from TBK1 upon viral infection or TLR3 stimulation. Interacts with TICAM1/TRIF, IRF3 and
DDX58/RIG-I. Interacts with CYLD. Interacts with HCV NS3, Ebola virus VP35 and Borna disease virus protein P; these
interactions lead to inhibition of cellular antiviral response by blocking necessary interactions between the TBK1 and
its substrates IRF3 and IRF7. Interacts with OPTN and TRAF3. Interacts with SRC. Interacts with the exocyst complex
subunit SEC5/EXOC2; this interaction is sufficient to trigger TBK1 activity. Interacts with TMEM173/MITA. Interacts
with IFIT3 (via N-terminus). Interacts with MAVS only in the presence of IFIT3
Subcellular location: Cytoplasm. Note=Upon mitogen stimulation or triggering of the immune system, TBK1 is recruited to
the exocyst by EXOC2
Miscellaneous: In cancer cells, pathological TBK1 activation promotes oncogenic transformation by suppressing
programmed cell death. Mechanistically, the RALB-SEC5/EXOC2-TBK1 signaling cascade seems to participate in both innate
immune signaling and cell transformation. Additionally, TBK1 supports oncogenesis by directly phosphorylating and
activating AKT1 at the exocyst (PubMed:21042276)
Sequence caution: Sequence=BAA92129.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
3 PDB 3D structures from and Proteopedia for TBK1:
4EFO (3D)        4EUT (3D)        4EUU (3D)    
Secondary accessions: A8K4S4 Q8IYV3 Q9NUJ5

Explore the universe of human proteins at neXtProt for TBK1: NX_Q9UHD2

Post-translational modifications:

  • Autophosphorylation at Ser-172 activates the kinase, and is an essential step for virus-triggered signaling.
  • Phosphorylated by IKBKB/IKKB at Ser-1721
  • 'Lys-63'-linked polyubiquitination by MIB1 after RNA virus infection, or by NRDP1 after LPS stimulation, may
  • participate in kinase activation. 'Lys-48'-linked polyubiquitination at Lys-670 by DTX4 leads to proteasomal
    degradation1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9UHD2

  • 4/5 DME Specific Peptides for TBK1 (Q9UHD2) (see all 5)
     GPRRNKE  HRDIKPGN  YNEEQIHK  YHAATGSLPF 

    TBK1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_037386.1  
    ENSEMBL proteins: 
     ENSP00000329967   ENSP00000445834   ENSP00000445628   ENSP00000444428  
    Reactome Protein details: Q9UHD2
    Human Recombinant Protein Products: 
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    Novus Biologicals TBK1 Proteins
    Novus Biologicals TBK1 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for TBK1

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737cytoplasm IDA--
    GO:0005829cytosol TAS--
    GO:0005886plasma membrane ----
    GO:0010008endosome membrane TAS--


    TBK1 for ontologies           About GeneDecksing



    TBK1 Antibody Products: 
    EMD Millipore Mono- and Polyclonal Antibodies for the study of TBK1
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    Abcam antibodies for TBK1 
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    ThermoFisher Antibodies for TBK1

    Assay Products for TBK1: 
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    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for TBK1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    TBK1 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR017441 Protein_kinase_ATP_BS
     IPR011009 Kinase-like_dom
     IPR000719 Prot_kinase_cat_dom

    Graphical View of Domain Structure for InterPro Entry Q9UHD2

    ProtoNet protein and cluster: Q9UHD2

    UniProtKB/Swiss-Prot: TBK1_HUMAN, Q9UHD2
    Domain: Comprises A N-terminal kinase domain, an ubiquitin-like domain and a C-terminal leucine-zipper
    Similarity: Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. I-kappa-B kinase subfamily
    Similarity: Contains 1 protein kinase domain
    Similarity: Contains 1 ubiquitin-like domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: TBK1_HUMAN, Q9UHD2
    Function: Serine/threonine kinase that plays an essential role in regulating inflammatory responses to foreign agents.
    Following activation of toll-like receptors by viral or bacterial components, associates with TRAF3 and TANK and
    phosphorylates interferon regulatory factors (IRFs) IRF3 and IRF7 as well as DDX3X. This activity allows subsequent
    homodimerization and nuclear translocation of the IRFs leading to transcriptional activation of pro-inflammatory and
    antiviral genes including IFN-alpha and IFN-beta. In order to establish such an antiviral state, TBK1 form several
    different complexes whose composition depends on the type of cell and cellular stimuli. Thus, several scaffolding
    molecules including FADD, TRADD, MAVS or SINTBAD can be recruited to the TBK1-containing-complexes. Under particular
    conditions, functions as a NF-kappa-B effector by phosphorylating NF-kappa-B inhibitor alpha/NFKBIA, IKBKB or RELA to
    translocate NF-Kappa-B to the nucleus. Restricts bacterial proliferation by phosphorylating the autophagy receptor
    OPTN/Optineurin on 'Ser-177', thus enhancing LC3 binding affinity and antibacterial autophagy. Attenuates retroviral
    budding by phosphorylating the endosomal sorting complex required for transport-I (ESCRT-I) subunit VPS37C.
    Phosphorylates and activates AKT1. Phosphorylates Borna disease virus (BDV) P protein
    Catalytic activity: ATP + a protein = ADP + a phosphoprotein

    Enzyme Numbers (IUBMB): EC 2.7.112 EC 2.7.11.11

    miRNA
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    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat TBK1
    8/18 QIAGEN miScript miRNA Assays for microRNAs that regulate TBK1 (see all 18):
    hsa-miR-539 hsa-miR-429 hsa-miR-578 hsa-miR-373* hsa-miR-219-2-3p hsa-miR-200b hsa-miR-365 hsa-miR-203
    SwitchGear 3'UTR luciferase reporter plasmidTBK1 3' UTR sequence
    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TBK1 (see all 7)
    OriGene shRNA RFP: TBK1
    OriGene siRNA: TBK1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TBK1

    Gene Editing
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    DNA2.0 Custom Protein Engineering Service for TBK1

    Clone
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    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TBK1 (see all 3)
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    GenScript: all cDNA clones in your preferred vector: TBK1 (NM_013254)
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TBK1 

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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TBK1

    Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding IEA--
    GO:0004672protein kinase activity TAS--
    GO:0004674protein serine/threonine kinase activity TAS--
    GO:0005515protein binding IPI--
    GO:0005524ATP binding IEA--


    TBK1 for ontologies           About GeneDecksing


    5 GenomeRNAi human phenotypes for TBK1:
     Decreased Hepatitis C virus re  Decreased focal adhesion (FA)   Increased Salmonella enterica   Increased Salmonella enterica  
     Increased colony dispersion (i 

    Animal Models:
         Mouse knock-outs for TBK1: Tbk1tm1Yeh Tbk1tm1.1Lex Tbk1tm1Aki
         10 MGI mutant phenotypes (inferred from 6 alleles(MGI details for Tbk1):
     cardiovascular system  cellular  hematopoietic system  homeostasis/metabolism  immune system 
     integument  liver/biliary system  mortality/aging  no phenotypic analysis  renal/urinary system 

    TBK1 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/19 super-pathways (see all 19About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1TRAF6 Mediated Induction of proinflammatory cytokines
    TRIF-mediated TLR3/TLR4 signaling 0.73
    Activated TLR4 signalling0.63
    MyD88-independent cascade 0.72
    Toll Like Receptor 4 (TLR4) Cascade0.61
    Toll Like Receptor 3 (TLR3) Cascade0.72
    Toll-Like Receptors Cascades0.53
    2Toll-like receptor signaling pathway
    Toll-like receptor signaling pathway1.00
    Toll-Like receptor Signaling Pathways0.51
    Toll-like receptor signaling pathway0.97
    3RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways
    RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways1.00
    Negative regulators of RIG-I/MDA5 signaling0.49
    RIG-I-like receptor signaling pathway0.52
    4Immune System
    Immune System1.00
    Innate Immune System0.46
    5Measles
    Measles1.00
    Influenza A0.35

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for TBK1
        Selected targets of ESR1

    1 R&D Systems Pathway for TBK1
        Toll-Like receptor Signaling Pathways

    2 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for TBK1
        Toll-Like Receptors Pathway
    TNFR2 Pathway

    3 Cell Signaling Technology (CST) Pathways for TBK1
        Lymphocyte Signaling
    TGF-beta/Smad Signaling
    NF-kappaB Signaling

    2 BioSystems Pathways for TBK1 
        Toll-like receptor signaling pathway
    TNF-alpha/NF-kB Signaling Pathway

    5/17        Reactome Pathways for TBK1 (see all 17)
        RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways
    TRAF6 mediated IRF7 activation
    Toll-Like Receptors Cascades
    Toll Like Receptor 3 (TLR3) Cascade
    MyD88-independent cascade


    5/6         Kegg Pathways  (Kegg details for TBK1) (see all 6):
        Toll-like receptor signaling pathway
    RIG-I-like receptor signaling pathway
    Cytosolic DNA-sensing pathway
    Hepatitis C
    Measles


    TBK1 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for TBK1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/140 Interacting proteins for TBK1 (Q9UHD21, 2, 3 ENSP000003299674) via UniProtKB, MINT, STRING, and/or I2D (see all 140)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    TANKQ928441, 2, 3, ENSP000002590754EBI-1383470,EBI-356349 MINT-5114997 MINT-8144259 MINT-49268 MINT-49290 MINT-48040 MINT-6492446 MINT-8151323 MINT-48264 I2D: score=8 STRING: ENSP00000259075
    OPTNQ96CV91, 2, 3, ENSP000002630364EBI-1383470,EBI-748974 MINT-6492491 MINT-6492320 MINT-6492337 MINT-6492467 MINT-6492519 MINT-6492303 MINT-6492427 MINT-6492355 I2D: score=4 STRING: ENSP00000263036
    TBKBP1A7MCY62, 3, ENSP000003547774STRING: ENSP00000354777 MINT-5114931 MINT-5114886 MINT-49254 MINT-48041 MINT-5114907 MINT-5115080 I2D: score=6 
    CALM2P621582, 3MINT-49274 I2D: score=2 
    CALM3P621582, 3MINT-49274 I2D: score=2 
    About this table

    Gene Ontology (GO): 5/25 biological process terms (GO ID links to tree view) (see all 25):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0002218activation of innate immune response ----
    GO:0002756MyD88-independent toll-like receptor signaling pathway TAS--
    GO:0006468protein phosphorylation ----
    GO:0006954inflammatory response TAS--
    GO:0007249I-kappaB kinase/NF-kappaB cascade TAS--


    TBK1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    TBK1 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for TBK1

    2 HMDB Compounds for TBK1    About this table
    CompoundSynonyms CAS #PubMed Ids
    ADPadenosindiphosphorsaeure (see all 8)58-64-0--
    Adenosine triphosphate5'-(tetrahydrogen triphosphate) Adenosine (see all 24)56-65-5--
    6 Novoseek chemical compound relationships for TBK1 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    poly(i-c) 73.9 1 16849320 (1)
    rantes 61.5 4 17599067 (1), 19656901 (1), 18282411 (1)
    serine 39.7 9 14679297 (1), 9621042 (1), 9418906 (1), 9792838 (1) (see all 9)
    inosine monophosphate 38.7 1 17157040 (1)
    threonine 38.2 6 9621042 (1), 9418906 (1), 9792838 (1), 11070003 (1) (see all 6)
    tyrosine 0 1 17056502 (1)

    Search CenterWatch for drugs/clinical trials and news about TBK1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for TBK1 gene: 
    NM_013254.3  

    Unigene Cluster for TBK1:

    TANK-binding kinase 1
    Hs.505874  [show with all ESTs]
    Unigene Representative Sequence: NM_013254
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000331710(uc001ssc.2) ENST00000538890 ENST00000540417 ENST00000539810
    ENST00000545025 ENST00000536906 ENST00000541805 ENST00000545392

    miRNA
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    hsa-miR-539 hsa-miR-429 hsa-miR-578 hsa-miR-373* hsa-miR-219-2-3p hsa-miR-200b hsa-miR-365 hsa-miR-203
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    Inhib. RNA
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    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TBK1
    Clone
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    GenScript: all cDNA clones in your preferred vector: TBK1 (NM_013254)
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TBK1 
    Primer
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    Browse OriGene validated miRNA SYBR primer pairs
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TBK1
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TBK1

    Additional cDNA sequence: 

    AF174536.1 AF191838.1 AK002192.1 AK291039.1 AK303683.1 BC034950.2 

    6 DOTS entries:

    DT.215961  DT.100748957  DT.40280149  DT.75155342  DT.75175835  DT.95080140 

    3 AceView cDNA sequences:

    BC009864 CB528778 AI972136 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TBK1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GAAAAAAATA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See TBK1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for TBK1

    SOURCE GeneReport for Unigene cluster: Hs.505874

    UniProtKB/Swiss-Prot: TBK1_HUMAN, Q9UHD2
    Tissue specificity: Ubiquitous with higher expression in testis

        SABiosciences Expression via Pathway-Focused PCR Arrays including TBK1: 
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for TBK1 gene from 6/18 species (see all 18)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves TBK11 TANK-binding kinase 1 80.29(n)
    86.56(a)
      417825  NM_001199558.1  NP_001186487.1 
    lizard
    (Anolis carolinensis)
    Reptilia TBK16
    --
    82(a)
    1 ↔ 1
    5(50456954-50477532)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.149202 Xenopus laevis transcribed sequence with weak similarity more 75.57(n)    CD327798.1 
    zebrafish
    (Danio rerio)
    Actinopterygii tbk11 TANK-binding kinase 1 69.85(n)
    84.62(a)
      692289  NM_001044748.1  NP_001038213.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta ik21 , 3 defense response protein kinase3
    IkappaB kinase-like 21
    38(a)3
    46.54(n)1
    38.77(a)1
      38D43
    353291  NM_165337.11  NP_724278.11 
    worm
    (Caenorhabditis elegans)
    Secernentea T07F12.46
    Y39G8B.56
    (see all 3)
    Protein Y39G8B.5
    (see all 3)
    24(a)
    11(a)
    (see all 3)
    possible ortholog
    many ↔ many
    (see all 3)
    X(4896572-4898140)
    II(13987542-13991764)


    ENSEMBL Gene Tree for TBK1 (if available)
    TreeFam Gene Tree for TBK1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for TBK1 gene
    IKBKB2  CHUK2  IKBKE2  
    10 SIMAP similar genes for TBK1 using alignment to 4 protein entries:     TBK1_HUMAN (see all proteins):
    IKBKE    MAP4K4    MYO3B    PRKACA    ULK3    MELK
    AURKB    MARK2    JAK2    MAP4K1

    TBK1 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/803 NCBI SNPs in TBK1 are shown (see all 803    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 12 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1902400741,2
    --64843862(+) ACATAA/CAGACT 1 -- us2k10--------
    rs1162822791,2
    F,--64843891(+) ATGCTA/GTCTCA 1 -- us2k11Minor allele frequency- G:0.05WA 118
    rs1821718721,2
    --64844080(+) GTGTGC/TACCAC 1 -- us2k10--------
    rs123134491,2
    C,F,--64844129(+) TCACTA/GTGTTA 1 -- us2k18Minor allele frequency- G:0.42NA WA EA 252
    rs1880421731,2
    --64844294(+) CAGAAG/TATTTA 1 -- us2k10--------
    rs123676401,2
    C--64844712(+) GCTCAG/ATTAAT 1 -- us2k1 tfbs32Minor allele frequency- A:0.00NA 4
    rs563089541,2
    C--64844876(+) TTAAAA/GTGCTA 1 -- us2k10--------
    rs1907825911,2
    --64844967(+) GAGAGG/TTAAGA 1 -- us2k10--------
    rs1838871821,2
    --64844995(+) GTAATC/TGGCAG 1 -- us2k10--------
    rs1888299171,2
    --64845177(+) AAAGGC/TCTGTT 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for TBK1 (64845660 - 64895891 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for TBK1: --
    Human Gene Mutation Database (HGMD): TBK1

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    TBK1 for disorders           About GeneDecksing

    OMIM gene information: 604834    OMIM disorders: --

    20 diseases for TBK1:    About MalaCards
    open-angle glaucoma    primary open angle glaucoma    dengue hemorrhagic fever    hantavirus pulmonary syndrome
    hemorrhagic fever    borna disease    glaucoma    cytomegalovirus infection
    chronic lymphocytic leukemia    stomatitis    lymphocytic leukemia    kawasaki disease
    hepatitis c    hepatitis b    measles    medulloblastoma
    hepatitis    immunodeficiency    influenza    leukemia

    5 Novoseek disease relationships for TBK1 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    virus infection 55.8 12 17376932 (1), 15210742 (1), 16281057 (1), 19307177 (1) (see all 8)
    vesicular stomatitis 46.8 2 15367631 (2)
    necrosis 16.7 7 19307177 (2), 18450748 (1)
    immunodeficiency 16.6 7 10713183 (1), 10607567 (1), 11070003 (1), 9371615 (1) (see all 5)
    tumors 0 8 19307177 (2), 18450748 (1), 11745462 (1)

    Human Genome Epidemiology (HuGE) Navigator: TBK1 (6 documents)

    Export disorders for TBK1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for TBK1 gene, integrated from 9 sources (see all 189):
    (articles sorted by number of sources associating them with TBK1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. NAK is an IkappaB kinase-activating kinase. (PubMed id 10783893)1, 2, 3, 9 Tojima Y....Nakanishi M. (2000)
    2. NF-kB activation by a signaling complex containing TRAF2, TANK, and TBK1, a novel IKK-related kinase. (PubMed id 10581243)1, 2, 3, 9 Pomerantz J.L. and Baltimore D. (1999)
    3. The DEAD-box helicase DDX3X is a critical component of the TANK-binding kinase 1-dependent innate immune response. (PubMed id 18583960)1, 2, 9 Soulat D....Superti-Furga G. (2008)
    4. Activation of TBK1 and IKKvarepsilon kinases by vesicular stomatitis virus infection and the role of viral ribonucleoprotein in the development of interferon antiviral immunity. (PubMed id 15367631)1, 2, 9 tenOever B.R....Hiscott J. (2004)
    5. Toll/IL-1 receptor domain-containing adaptor inducing IFN-beta (TRIF) associates with TNF receptor-associated factor 6 and TANK-binding kinase 1, and activates two distinct transcription factors, NF-kappa B and IFN-regulatory factor-3, in the Toll-like receptor signaling. (PubMed id 14530355)1, 2, 9 Sato S....Akira S. (2003)
    6. Involvement of the ubiquitin-like domain of TBK1/IKK-i kinases in regulation of IFN-inducible genes. (PubMed id 17599067)1, 2, 9 Ikeda F....Dikic I. (2007)
    7. SIKE is an IKK epsilon/TBK1-associated suppressor of TLR3- and virus- triggered IRF-3 activation pathways. (PubMed id 16281057)1, 2, 9 Huang J.... Shu H.-B. (2005)
    8. IKKepsilon and TBK1 are essential components of the IRF3 signaling pathway. (PubMed id 12692549)1, 2, 9 Fitzgerald K.A.... Maniatis T. (2003)
    9. IKK-i and TBK-1 are enzymatically distinct from the homologous enzyme IKK-2: comparative analysis of recombinant human IKK-i, TBK-1, and IKK-2. (PubMed id 11839743)1, 2, 9 Kishore N.... Tripp C.S. (2002)
    10. Constitutive and interleukin-1-inducible phosphorylation of p65 NF-{kappa}B at serine 536 is mediated by multiple protein kinases including I{kappa}B kinase (IKK)-{alpha}, IKK{beta}, IKK{epsilon}, TRAF family member-associated (TANK)-binding kinase 1 (TBK1), and an unknown kinase and couples p65 to TATA-binding protein-associated factor II31-mediated interleukin-8 transcription. (PubMed id 15489227)1, 2, 9 Buss H....Kracht M. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 29110 HGNC: 11584 AceView: TBK1.1 Ensembl:ENSG00000183735 euGenes: HUgn29110
    ECgene: TBK1 Kegg: 29110 H-InvDB: TBK1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for TBK1 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for TBK1 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for TBK1 gene:
    Search GeneIP for patents involving TBK1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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