TBCD Gene
protein-coding GIFtS: 61
GCID: GC17P080709
|
|
tubulin folding cofactor D(Previous name: tubulin-specific chaperone d )
| |
Aliases for TBCD gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb) About This Section
|
| Aliases |
|---|
| Tubulin Folding Cofactor D1 2 | | TfcD1 | | Tubulin-Specific Chaperone D1 2 | | KIAA09883 | | Beta-Tubulin Cofactor D2 3 | | SSD13 | | Tubulin-Folding Cofactor D2 3 | | TFCD3 | | SSD-12 3 | | |
Export aliases for TBCD gene to outside databasesPrevious GC identifers: GC17P079838 GC17P083992 GC17P081239 GC17P081388 GC17P078303 GC17P076109 |
Summaries for TBCD gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| Entrez Gene summary for TBCD: Cofactor D is one of four proteins (cofactors A, D, E, and C) involved in the pathway leading to correctly foldedbeta-tubulin from folding intermediates. Cofactors A and D are believed to play a role in capturing and stabilizingbeta-tubulin intermediates in a quasi-native confirmation. Cofactor E binds to the cofactor D/beta-tubulin complex;interaction with cofactor C then causes the release of beta-tubulin polypeptides that are committed to the nativestate. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: TBCD_HUMAN, Q9BTW9Function: Tubulin-folding protein; involved in the first step of the tubulin folding pathway. Modulates microtubuledynamics by capturing GTP-bound beta-tubulin (TUBB). Acts as a GTPase-activating protein (GAP) for ARL2. Its abilityto interact with beta tubulin is regulated via its interaction with ARL2. Induces microtubule disruption in absence ofARL2. Increases degradation of beta tubulin, when overexpressed in polarized cells. Promotes epithelial celldetachment, a process antagonized by ARL2. Induces tight adherens and tight junctions disassembly at the lateral cellmembrane Gene Wiki entry for TBCD
|
Genomic Views for TBCD gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics) About This Section
| RefSeq DNA sequence:- NC_000017.10 NC_018928.1 NT_010663.15
Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the TBCD gene promoter: Tal-1 MyoD AP-4 MIF-1 E47 YY1 CREB AREB6 deltaCREB SEF-1 (1) Other transcription factors
Search SABiosciences Chromatin IP Primers for TBCD
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TBCD |
Genomic Location: Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 17q25.3 Ensembl cytogenetic band: 17q25.3 HGNC cytogenetic band: 17q25.3TBCD Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)

GeneLoc information about chromosome 17 GeneLoc Exon Structure GeneLoc location for GC17P080709: view genomic region
(about GC identifiers)
Start:
|
80,709,940 bp from pter |
End:
|
80,901,062 bp from pter |
Size:
|
191,123 bases |
Orientation:
|
plus strand |
|
Proteins for TBCD gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
| UniProtKB/Swiss-Prot: TBCD_HUMAN, Q9BTW9 (See
protein sequence)Recommended Name: Tubulin-specific chaperone D Size: 1192 amino acids; 132600 Da
Subunit: Found in a complex with at least ARL2, PPP2CB, PPP2R1A, PPP2R2A, PPP2R5E and TBCD. Interacts with PPP2CB.Interacts with ARL2 (By similarity). Supercomplex made of cofactors A to E. Cofactors A and D function by capturingand stabilizing tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex;interaction with cofactor C then causes the release of tubulin polypeptides that are committed to the native state.Interacts with ARL2; interaction is enhanced with the GDP-bound form of ARL2. Does not interact with ARL3, ARL4A andARL4D. Interacts with beta tubulin
Subcellular location: Cell junction, tight junction (By similarity). Lateral cell membrane (By similarity). Cytoplasm(By similarity). Cell junction, adherens junction (By similarity). Note=Localized in cell-cell contacts (Bysimilarity)
Sequence caution: Sequence=AAH39654.1; Type=Erroneous initiation; Note=Translation N-terminally extended;Sequence=BAA76832.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Secondary accessions: O95458 Q7L8K1 Q8IXP6 Q8NAX0 Q8WYH4 Q96E74 Q9UF82 Q9UG46 Q9Y2J3Alternative splicing: 5 isoforms: Q9BTW9-1 Q9BTW9-2 Q9BTW9-3 Q9BTW9-4 Q9BTW9-5 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for TBCD: NX_Q9BTW9
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9BTW9 TBCD Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_005984.3 ENSEMBL proteins: ENSP00000347719 ENSP00000440671 ENSP00000458535 ENSP00000459063 ENSP00000460450 ENSP00000458365 ENSP00000460949 ENSP00000461167 ENSP00000461680 ENSP00000458556 ENSP00000458599 ENSP00000458512 ENSP00000458916 ENSP00000380608 Reactome Protein details: Q9BTW9 Human Recombinant Protein Products:
Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view): About this table
TBCD for ontologies About GeneDecksing
TBCD Antibody Products: Assay Products for TBCD: |
Protein
Domains / Families for TBCD gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
TBCD for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q9BTW9ProtoNet protein and cluster: Q9BTW9 1 Blocks protein family: IPB000357 HEAT repeat
UniProtKB/Swiss-Prot: TBCD_HUMAN, Q9BTW9Similarity: Belongs to the TBCD familySimilarity: Contains 3 HEAT repeats |
Function for TBCD gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
| Function Summary: UniProtKB/Swiss-Prot: TBCD_HUMAN, Q9BTW9Function: Tubulin-folding protein; involved in the first step of the tubulin folding pathway. Modulates microtubuledynamics by capturing GTP-bound beta-tubulin (TUBB). Acts as a GTPase-activating protein (GAP) for ARL2. Its abilityto interact with beta tubulin is regulated via its interaction with ARL2. Induces microtubule disruption in absence ofARL2. Increases degradation of beta tubulin, when overexpressed in polarized cells. Promotes epithelial celldetachment, a process antagonized by ARL2. Induces tight adherens and tight junctions disassembly at the lateral cellmembraneInduction: Down-regulated by shear stress
Clone Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TBCD (see all 2) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TBCD OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: TBCD (NM_005993) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TBCD | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TBCD  |
In Situ Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TBCD |
Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view): About this table
TBCD for ontologies About GeneDecksing
2 GenomeRNAi human phenotypes for TBCD:
|
Pathways & Interactions for TBCD gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
| Unified GeneCards pathways  About this table  See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Chaperonin-mediated protein folding | | | 2 | Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane | | | 3 | Asparagine N-linked glycosylation | |
Pathway sources See GeneCards unified pathways Show all pathways
3
Reactome Pathways for TBCD
TBCD for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TBCD
STRING Interaction
Network Preview (showing 5 interactants - click image to see 15)
 5/21 Interacting proteins for TBCD (Q9BTW92, 3 ENSP000003477194) via UniProtKB, MINT, STRING, and/or I2D (see all 21)About this table
Gene Ontology (GO): 5/9 biological process terms (GO ID links to tree view) (see all 9): About this table
TBCD for ontologies About GeneDecksing
|
Drugs & Compounds for TBCD gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
Browse Tocris compounds for TBCD
1 HMDB Compound for TBCD About this table Search CenterWatch for drugs/clinical trials and news about TBCD 
|
Transcripts for TBCD gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
) About This Section
| REFSEQ mRNAs for TBCD gene (2 alternative transcripts): NM_005993.4 NM_001033052.1 Unigene Cluster for TBCD: Tubulin folding cofactor D Hs.464391 [show with all ESTs]Unigene Representative Sequence: NM_00599318/27 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 27): ENST00000355528(uc002kfx.1 uc002kfz.3) ENST00000539345(uc002kfy.1) ENST00000576160 ENST00000571712 ENST00000576996 ENST00000574801 ENST00000571316 ENST00000576760 ENST00000572984 ENST00000574975 ENST00000572953 ENST00000571796(uc002kgb.1) ENST00000574422 ENST00000571618 ENST00000574818 ENST00000574886 ENST00000570679 ENST00000577051
Clone Products: |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TBCD (see all 2) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TBCD OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: TBCD (NM_005993) | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TBCD | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TBCD  |
Additional cDNA sequence: AB023205.1 AF052173.1 AF193042.1 AJ006417.1 AK057975.1 AK091959.1 AK129619.1 AK293471.1 AL096745.1 AL133562.1 BC003094.1 BC012824.2 BC024167.1 BC039654.1 BC150142.1 24/32 DOTS entries (see all 32): DT.454741 DT.100673985 DT.118523 DT.95168149 DT.100814770 DT.100814775 DT.100814771 DT.91982660 DT.97790524 DT.100704661 DT.92447496 DT.92447500 DT.95168151 DT.102843133 DT.40115473 DT.95317658 DT.100030683 DT.100814773 DT.100814776 DT.102843138 DT.120973984 DT.120974001 DT.120974125 DT.120974127 24/434 AceView cDNA sequences (see all 434): BM783727 BM783758 AI659063 BF345976 F09256 AW247323 AA635108 BQ056753 BF345804 AA324892 BM783294 CR607508 BU187073 BX337078 AW769005 AI199465 BC006364 BM728485 BU552893 BM678619 NM_005993 BI834229 BM703854 BU164758 GeneLoc Exon Structure
5/11 Alternative Splicing Database (ASD) splice patterns (SP) for TBCD (see all 11) About this scheme
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7a | · | 7b | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18 | ^ | 19 | ^ | 20 | ^ | 21 | ^ | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   |
| ExUns: | 22 | ^ | 23 | ^ | 24 | ^ | 25 | ^ | 26 | ^ | 27 | ^ | 28a | · | 28b | ^ | 29 | ^ | 30 | ^ | 31a | · | 31b | ^ | 32a | · | 32b | · | 32c | ^ | 33 | ^ | 34 | ^ | 35a | · | 35b | · | 35c | ^ | 36 | ^ | 37 | ^ | 38 | ^ | 39a | · | 39b | ^ | 40 | ^ | |
| SP1: | |   | |   | |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | - |   | - |   | |   | |
| SP2: | |   | |   | |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | - |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 41 | ^ | 42a | · | 42b | · | 42c | ^ | 43a | · | 43b | |
| SP1: | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   |
ECgene alternative splicing isoforms for TBCD
|
Expression for TBCD gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| TBCD expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this imageBioGPS CGAP TAG: TACCAAGAAA
About this image See TBCD Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for TBCD
SOURCE GeneReport for Unigene cluster: Hs.464391 UniProtKB/Swiss-Prot: TBCD_HUMAN, Q9BTW9Tissue specificity: Ubiquitously expressed SABiosciences Custom PCR Arrays for TBCD
Primer Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TBCD Browse OriGene validated miRNA SYBR primer pairs
| |  | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat TBCD | |  | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TBCD | |  | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TBCD | In Situ Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TBCD |
Orthologs for TBCD gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for TBCD gene from 8/26 species (see all 26) About this table
| Organism |
Taxonomic classification |
Gene |
Description |
Human Similarity |
Orthology Type |
Details |
mouse (Mus musculus) |
Mammalia |
Tbcd1 , 5 |
tubulin-specific chaperone d1, 5 |
80.66(n)1 82.34(a)1 |
  |
11 (85.41 cM)5 1089031 NM_029878.31 NP_084154.11 1214519495 |
chicken (Gallus gallus) |
Aves |
TBCD1 |
tubulin folding cofactor D |
69.11(n) 71.01(a) |
  |
417334 NM_001012801.1 NP_001012819.1 |
lizard (Anolis carolinensis) |
Reptilia |
-- |
-- |
73(a) |
1 ↔ 1 |
2(108276955-108403230) |
zebrafish (Danio rerio) |
Actinopterygii |
tbcd1 |
tubulin-specific chaperone d |
64.01(n) 65.24(a) |
  |
553265 XM_001922549.1 XP_001922584.2 |
fruit fly (Drosophila melanogaster) |
Insecta |
BcDNA:LD223203 CG72611 |
CG72611 |
39(a)3 51.54(n)1 41.88(a)1 |
  |
22D13 333891 NM_134804.31 NP_608648.11 |
worm (Caenorhabditis elegans) |
Secernentea |
F16D3.43 |
-- |
28(a) |
  |
I(8372284-8377977) -- |
thale cress (Arabidopsis thaliana) |
eudicotyledons |
TTN11 |
armadillo/beta-catenin-like repeat-containing protein |
46.05(n) 38.5(a) |
  |
825245 NM_115938.5 NP_191633.3 |
rice (Oryza sativa) |
Liliopsida |
Os.172092 |
Oryza sativa (japonica cultivar-group) putative tubulin-folding more |
72.23(n) |
  |
NM_197281.1 |
ENSEMBL Gene Tree for TBCD (if available) TreeFam Gene Tree for TBCD (if available)  |
Paralogs for TBCD gene(Paralogs according to
1HomoloGene, 2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68) About This Section
| -- |
Genomic Variants for TBCD gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical significance | Chr 17 pos | Sequence | # | AA Chg | Type | More | # | Allele freq | Pop | Total sample | More |
|---|
HapMap Linkage Disequilibrium report for TBCD (80709940 - 80901062 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 13 variations for TBCD 3 CNVs: 102563 23537 73078 10 Indels: 25968 41358 45614 42447 102564 45613 73084 45612 67282 11906  | SABiosciences Cancer Mutation PCR Assays |
|  | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TBCD |
|
Disorders
/ Diseases for TBCD gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
TBCD for disorders About GeneDecksing
OMIM gene information: 604649
OMIM disorders: --
9 diseases for TBCD: About MalaCardsgilles de la tourette syndrome retinitis pigmentosa-2 retinitis pigmentosa tourette syndrome corneal dystrophy kidney disease retinitis choroiditis neuronitis 3 diseases from the University of Copenhagen DISEASES database for TBCD:Lattice corneal dystrophy Gilles de la Tourette syndrome Corneal granular dystrophy Human Genome Epidemiology (HuGE) Navigator: TBCD (3 documents) Export disorders for TBCD gene to outside databases
|
Publications for TBCD gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for TBCD gene, integrated from 9 sources (see all 37): (articles sorted by number of sources associating them with TBCD) | |  | Utopia: connect your pdf to the dynamic world of online information |
- Shear stress-dependent regulation of the human beta-tubulin folding cofactor D gene. (PubMed id 11110777)1, 2, 9 Schubert A....Morawietz H. (2000)
- ADP ribosylation factor-like protein 2 (Arl2) regulates the interaction of tubulin-folding cofactor D with native tubulin. (PubMed id 10831612)1, 2, 9 Bhamidipati A....Cowan N.J. (2000)
- Effect of TBCD and its regulatory interactor Arl2 on tubulin and microtubule integrity. (PubMed id 20740604)1, 2 Tian G.... Cowan N.J. (2010)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Functional overlap between retinitis pigmentosa 2 protein and the tubulin-specific chaperone cofactor C. (PubMed id 11847227)1, 2 Bartolini F....Cowan N.J. (2002)
- Tubulin folding cofactor D is a microtubule destabilizing protein. (PubMed id 10722852)1, 2 Martin L.... Zabala J.C. (2000)
- Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10231032)1, 2 Nagase T.... Ohara O. (1999)
- Beta-tubulin cofactor D and ARL2 take part in apical junctional complex disassembly and abrogate epithelial structure. (PubMed id 17704193)1, 9 Shultz T....Altschuler Y. (2008)
- Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
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External Searches for TBCD gene
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
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Genome Databases showing TBCD gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
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Other Databases showing TBCD gene
(According to HUGE)
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Specialized Databases showing TBCD gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
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| Name | Description |
| PharmGKB entry for TBCD | Pharmacogenomics, SNPs, Pathways |
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| Patent Information for TBCD gene: Search GeneIP for patents involving TBCD
GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Products for TBCD gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
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| | | | Browse OriGene Antibodies | | OriGene shRNA RFP for TBCD | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TBCD | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TBCD | | Browse OriGene Protein Over-expression Lysates | | Browse OriGene Fluorogenic Cell Assay Kits | | OriGene siRNA for TBCD | | OriGene 3'-UTR Clone for TBCD | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TBCD | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TBCD | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | OriGene Custom Antibody Services for TBCD | | OriGene Custom Protein Services for TBCD | | OriGene Custom Immunoassay Development | | |
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| | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TBCD | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TBCD | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TBCD | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TBCD | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TBCD | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TBCD |
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 | | TBCD Proteins, Antibodies, CLIAs, and ELISAs |
| | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TBCD |
|  |  |  | | | ThermoFisher Antibodies for TBCD |
| | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TBCD |
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