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Aliases for TBC1D3P5 Gene

Aliases for TBC1D3P5 Gene

  • TBC1 Domain Family Member 3 Pseudogene 5 2 3 5
  • TBC1 Domain Family, Member 3 Pseudogene 5 2

External Ids for TBC1D3P5 Gene

Previous GeneCards Identifiers for TBC1D3P5 Gene

  • GC17P025745

Summaries for TBC1D3P5 Gene

GeneCards Summary for TBC1D3P5 Gene

TBC1D3P5 (TBC1 Domain Family Member 3 Pseudogene 5) is a Pseudogene.

Additional gene information for TBC1D3P5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TBC1D3P5 Gene

Genomics for TBC1D3P5 Gene

GeneHancer (GH) Regulatory Elements for TBC1D3P5 Gene

Promoters and enhancers for TBC1D3P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I027292 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 4 -122.3 -122296 4.8 MLX DMAP1 IRF4 YY1 ZNF143 SP3 NFYC MEF2D GLIS1 RCOR2 MIR4522 PIR52156 WSB1 ITM2BP1 TBC1D3P5 PIR61936
GH17I027263 Enhancer 0.9 Ensembl ENCODE 4.1 -152.9 -152892 1.8 ELF3 SOX13 TFAP4 PKNOX1 FOXA2 SAP130 JUN MAX CEBPG ZNF644 WSB1 TBC1D3P5 RPL34P31 ENSG00000265246
GH17I027300 Enhancer 0.6 dbSUPER 4 -114.2 -114199 5.4 PKNOX1 ZNF362 FOXA2 CEBPG ATF2 FOXA1 PRDM6 BCL6B FOS PIR61936 WSB1 TBC1D3P5 PIR52156
GH17I027413 Enhancer 0.5 Ensembl 0.8 -3.7 -3665 1.6 CTCF PKNOX1 ETV6 IRF4 RAD21 SPI1 ZBTB17 ENSG00000266356 TBC1D3P5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TBC1D3P5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TBC1D3P5 Gene

Genomic Locations for TBC1D3P5 Gene
chr17:27,417,690-27,431,623
(GRCh38/hg38)
Size:
13,934 bases
Orientation:
Plus strand
chr17:25,744,716-25,758,649
(GRCh37/hg19)

Genomic View for TBC1D3P5 Gene

Genes around TBC1D3P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TBC1D3P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TBC1D3P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBC1D3P5 Gene

Proteins for TBC1D3P5 Gene

Post-translational modifications for TBC1D3P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TBC1D3P5 Gene

Domains & Families for TBC1D3P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TBC1D3P5 Gene

Function for TBC1D3P5 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TBC1D3P5 Gene

Localization for TBC1D3P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TBC1D3P5 Gene

Pathways & Interactions for TBC1D3P5 Gene

SuperPathways for TBC1D3P5 Gene

No Data Available

Interacting Proteins for TBC1D3P5 Gene

Gene Ontology (GO) - Biological Process for TBC1D3P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TBC1D3P5 Gene

Drugs & Compounds for TBC1D3P5 Gene

No Compound Related Data Available

Transcripts for TBC1D3P5 Gene

mRNA/cDNA for TBC1D3P5 Gene

(3) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TBC1D3P5 Gene

TBC1 domain family, member 3 pseudogene 5:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TBC1D3P5 Gene

No ASD Table

Relevant External Links for TBC1D3P5 Gene

GeneLoc Exon Structure for
TBC1D3P5
ECgene alternative splicing isoforms for
TBC1D3P5

Expression for TBC1D3P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TBC1D3P5 Gene

mRNA differential expression in normal tissues according to GTEx for TBC1D3P5 Gene

This gene is overexpressed in Testis (x50.0).

NURSA nuclear receptor signaling pathways regulating expression of TBC1D3P5 Gene:

TBC1D3P5

SOURCE GeneReport for Unigene cluster for TBC1D3P5 Gene:

Hs.385755
genes like me logo Genes that share expression patterns with TBC1D3P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TBC1D3P5 Gene

Orthologs for TBC1D3P5 Gene

Evolution for TBC1D3P5 Gene

ENSEMBL:
Gene Tree for TBC1D3P5 (if available)
TreeFam:
Gene Tree for TBC1D3P5 (if available)

No data available for Orthologs for TBC1D3P5 Gene

Paralogs for TBC1D3P5 Gene

No data available for Paralogs for TBC1D3P5 Gene

Variants for TBC1D3P5 Gene

Sequence variations from dbSNP and Humsavar for TBC1D3P5 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000144715 -- 27,420,679(+) T/G intron_variant
rs1000365665 -- 27,429,826(+) C/A non_coding_transcript_variant
rs1000479753 -- 27,416,751(+) A/G upstream_transcript_variant
rs1000854085 -- 27,417,056(+) C/T upstream_transcript_variant
rs1000897441 -- 27,431,949(+) T/A downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TBC1D3P5 Gene

Variant ID Type Subtype PubMed ID
dgv540e199 CNV deletion 23128226
esv22166 CNV gain+loss 19812545
esv2662228 CNV deletion 23128226
esv2760459 CNV loss 21179565
esv3640291 CNV loss 21293372
nsv2014 CNV deletion 18451855
nsv436230 CNV deletion 17901297
nsv442414 CNV loss 18776908
nsv960080 CNV duplication 23825009

Additional Variant Information for TBC1D3P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TBC1D3P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TBC1D3P5 Gene

Disorders for TBC1D3P5 Gene

Additional Disease Information for TBC1D3P5

No disorders were found for TBC1D3P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TBC1D3P5 Gene

Publications for TBC1D3P5 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for TBC1D3P5 Gene

Sources for TBC1D3P5 Gene

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