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Aliases for TBC1D3P2 Gene

Aliases for TBC1D3P2 Gene

  • TBC1 Domain Family Member 3 Pseudogene 2 2 3 5
  • TBC1 Domain Family, Member 3 Pseudogene 2 2

External Ids for TBC1D3P2 Gene

Previous GeneCards Identifiers for TBC1D3P2 Gene

  • GC17M057699
  • GC17M057651
  • GC17U901289
  • GC17M060344

Summaries for TBC1D3P2 Gene

GeneCards Summary for TBC1D3P2 Gene

TBC1D3P2 (TBC1 Domain Family Member 3 Pseudogene 2) is a Pseudogene.

Additional gene information for TBC1D3P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TBC1D3P2 Gene

Genomics for TBC1D3P2 Gene

Regulatory Elements for TBC1D3P2 Gene

Enhancers for TBC1D3P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H061334 1.6 Ensembl ENCODE dbSUPER 14.6 +939.9 939891 2 FOXA2 MLX ARID4B FEZF1 DMAP1 ZNF2 YY1 SLC30A9 FOS SP3 PPM1D KRT18P61 ENSG00000263887 TBC1D3P2 MED13 NACA2 GC17P061333 ENSG00000273982
GH17H062062 1.5 FANTOM5 ENCODE 14.6 +211.2 211161 4 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B MED13 TBC1D3P2 ENSG00000263887 EFCAB3 RPS23P7 RPLP2P5 LOC101927877 TRMT112P3 RPS10P26 TLK2
GH17H061926 1.2 ENCODE 14.6 +348.2 348159 2 HDGF FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 MED13 RPS10P26 TLK2 TBC1D3P2 ENSG00000263887 RPLP2P5 EFCAB3 RPS23P7 LOC101927877 INTS2
GH17H062965 1.1 ENCODE 14.6 -691.5 -691518 4 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 ZNF2 ZNF766 ZNF143 CYB561 CSH2 TRMT112P3 LOC100419888 LOC101927877 ENSG00000263501 RPLP2P5 RPS23P7 ENSG00000263887 EFCAB3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TBC1D3P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for TBC1D3P2 Gene

Chromosome:
17
Start:
62,264,705 bp from pter
End:
62,275,655 bp from pter
Size:
10,951 bases
Orientation:
Minus strand

Genomic View for TBC1D3P2 Gene

Genes around TBC1D3P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TBC1D3P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TBC1D3P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBC1D3P2 Gene

Proteins for TBC1D3P2 Gene

Post-translational modifications for TBC1D3P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TBC1D3P2 Gene

Domains & Families for TBC1D3P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TBC1D3P2 Gene

Function for TBC1D3P2 Gene

Phenotypes for TBC1D3P2 Gene

GenomeRNAi human phenotypes for TBC1D3P2:
genes like me logo Genes that share phenotypes with TBC1D3P2: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for TBC1D3P2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TBC1D3P2 Gene

Localization for TBC1D3P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TBC1D3P2 Gene

Pathways & Interactions for TBC1D3P2 Gene

SuperPathways for TBC1D3P2 Gene

No Data Available

Interacting Proteins for TBC1D3P2 Gene

Gene Ontology (GO) - Biological Process for TBC1D3P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TBC1D3P2 Gene

Drugs & Compounds for TBC1D3P2 Gene

No Compound Related Data Available

Transcripts for TBC1D3P2 Gene

mRNA/cDNA for TBC1D3P2 Gene

(3) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TBC1D3P2 Gene

TBC1 domain family, member 3 pseudogene 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for TBC1D3P2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TBC1D3P2 Gene

No ASD Table

Relevant External Links for TBC1D3P2 Gene

GeneLoc Exon Structure for
TBC1D3P2
ECgene alternative splicing isoforms for
TBC1D3P2

Expression for TBC1D3P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TBC1D3P2 Gene

mRNA differential expression in normal tissues according to GTEx for TBC1D3P2 Gene

This gene is overexpressed in Testis (x47.2).

NURSA nuclear receptor signaling pathways regulating expression of TBC1D3P2 Gene:

TBC1D3P2

SOURCE GeneReport for Unigene cluster for TBC1D3P2 Gene:

Hs.448884
genes like me logo Genes that share expression patterns with TBC1D3P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TBC1D3P2 Gene

Orthologs for TBC1D3P2 Gene

Evolution for TBC1D3P2 Gene

ENSEMBL:
Gene Tree for TBC1D3P2 (if available)
TreeFam:
Gene Tree for TBC1D3P2 (if available)

No data available for Orthologs for TBC1D3P2 Gene

Paralogs for TBC1D3P2 Gene

No data available for Paralogs for TBC1D3P2 Gene

Variants for TBC1D3P2 Gene

Sequence variations from dbSNP and Humsavar for TBC1D3P2 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000240994 -- 62,267,625(+) ACCCC(C/T)GGGCT intron-variant
rs1000484095 -- 62,264,703(+) AAAAT(C/G)ATTTC splice-donor-variant
rs1000542432 -- 62,264,882(+) ATCTC(C/T)GAATG nc-transcript-variant
rs1000566365 -- 62,273,215(+) TTTAG(A/C)CGCGA intron-variant
rs1001431183 -- 62,271,703(+) AGCTC(C/T)GGGTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TBC1D3P2 Gene

Variant ID Type Subtype PubMed ID
dgv1789e59 CNV duplication 20981092
dgv1790e59 CNV duplication 20981092
esv27452 CNV gain+loss 19812545
esv2758701 CNV gain+loss 17122850
esv3351514 CNV duplication 20981092
esv3355917 CNV duplication 20981092
nsv428350 CNV gain 18775914
nsv469887 CNV gain+loss 16826518
nsv575844 CNV loss 21841781
nsv833507 CNV loss 17160897
nsv833508 CNV gain+loss 17160897
nsv952351 CNV deletion 24416366
nsv9583 CNV gain+loss 18304495
nsv962357 CNV duplication 23825009

Relevant External Links for TBC1D3P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TBC1D3P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TBC1D3P2 Gene

Disorders for TBC1D3P2 Gene

Relevant External Links for TBC1D3P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TBC1D3P2

No disorders were found for TBC1D3P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TBC1D3P2 Gene

Publications for TBC1D3P2 Gene

  1. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for TBC1D3P2 Gene

Sources for TBC1D3P2 Gene

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