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Aliases for TBC1D29 Gene

Aliases for TBC1D29 Gene

  • TBC1 Domain Family, Member 29 2 3

External Ids for TBC1D29 Gene

Summaries for TBC1D29 Gene

GeneCards Summary for TBC1D29 Gene

TBC1D29 (TBC1 Domain Family, Member 29) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TBC1D29 Gene

Genomics for TBC1D29 Gene

Genomic Location for TBC1D29 Gene

Start:
30,556,977 bp from pter
End:
30,563,493 bp from pter
Size:
6,517 bases
Orientation:
Plus strand

Genomic View for TBC1D29 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TBC1D29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBC1D29 Gene

Regulatory Elements for TBC1D29 Gene

Proteins for TBC1D29 Gene

  • Protein details for TBC1D29 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UFV1-TBC29_HUMAN
    Recommended name:
    Putative TBC1 domain family member 29
    Protein Accession:
    Q9UFV1
    Secondary Accessions:

    Protein attributes for TBC1D29 Gene

    Size:
    150 amino acids
    Molecular mass:
    16280 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TBC1D29 Gene

Proteomics data for TBC1D29 Gene at MOPED

Post-translational modifications for TBC1D29 Gene

No Post-translational modifications

Other Protein References for TBC1D29 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TBC1D29 Gene

Domains for TBC1D29 Gene

Protein Domains for TBC1D29 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

TBC29_HUMAN
Domain:
  • Contains 1 Rab-GAP TBC domain.:
    • Q9UFV1
genes like me logo Genes that share domains with TBC1D29: view

No data available for Gene Families for TBC1D29 Gene

Function for TBC1D29 Gene

Phenotypes for TBC1D29 Gene

GenomeRNAi human phenotypes for TBC1D29:
genes like me logo Genes that share phenotypes with TBC1D29: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TBC1D29 Gene

Localization for TBC1D29 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TBC1D29 Gene COMPARTMENTS Subcellular localization image for TBC1D29 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1

No data available for Gene Ontology (GO) - Cellular Components for TBC1D29 Gene

Pathways for TBC1D29 Gene

SuperPathways for TBC1D29 Gene

No Data Available

Interacting Proteins for TBC1D29 Gene

Gene Ontology (GO) - Biological Process for TBC1D29 Gene

None

No data available for Pathways by source for TBC1D29 Gene

Transcripts for TBC1D29 Gene

mRNA/cDNA for TBC1D29 Gene

(2) REFSEQ mRNAs :
(3) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TBC1D29 Gene

No ASD Table

Relevant External Links for TBC1D29 Gene

GeneLoc Exon Structure for
TBC1D29
ECgene alternative splicing isoforms for
TBC1D29

Expression for TBC1D29 Gene

mRNA expression in normal human tissues for TBC1D29 Gene

mRNA differential expression in normal tissues according to GTEx for TBC1D29 Gene

This gene is overexpressed in Testis (26.9).

SOURCE GeneReport for Unigene cluster for TBC1D29 Gene Hs.241421

genes like me logo Genes that share expressions with TBC1D29: view

Orthologs for TBC1D29 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for TBC1D29 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC101059380 36
  • 90.88 (n)
  • 85.85 (a)
TBC1D29 37
  • 91 (a)
OneToOne
Species with no ortholog for TBC1D29:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TBC1D29 Gene

ENSEMBL:
Gene Tree for TBC1D29 (if available)
TreeFam:
Gene Tree for TBC1D29 (if available)

Paralogs for TBC1D29 Gene

Selected SIMAP similar genes for TBC1D29 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with TBC1D29: view

No data available for Paralogs for TBC1D29 Gene

Variants for TBC1D29 Gene

Sequence variations from dbSNP and Humsavar for TBC1D29 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs186262 -- 30,557,514(+) CTGAC(A/G)TCCAC intron-variant
rs216452 -- 30,556,723(+) GCTTC(C/T)GAAAC upstream-variant-2KB
rs216453 -- 30,558,349(+) GTGGG(A/G)GTGTC upstream-variant-2KB, intron-variant
rs216454 -- 30,561,716(+) ggatg(G/T)ctggg intron-variant
rs216455 -- 30,563,185(+) GCCTG(C/T)TCTCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TBC1D29 Gene

Variant ID Type Subtype PubMed ID
nsv515870 CNV Gain 19592680
dgv3138n71 CNV Gain 21882294
esv29095 CNV Gain 19812545
nsv827943 CNV Gain 20364138
esv32561 CNV Gain 17666407
nsv908047 CNV Gain 21882294
nsv471394 CNV Duplication 19718026

Relevant External Links for TBC1D29 Gene

HapMap Linkage Disequilibrium report
TBC1D29

Disorders for TBC1D29 Gene

No disorders were found for TBC1D29 Gene.

No data available for UniProtKB/Swiss-Prot for TBC1D29 Gene

Publications for TBC1D29 Gene

  1. GAPs galore! A survey of putative Ras superfamily GTPase activating proteins in man and Drosophila. (PMID: 12618308) Bernards A. (Biochim. Biophys. Acta 2003) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  3. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for TBC1D29 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TBC1D29
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TBC1D29
    • Block miRNA regulation of TBC1D29 using miScript Target Protectors

    Sources for TBC1D29 Gene

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