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Aliases for TBC1D27P Gene

Aliases for TBC1D27P Gene

  • TBC1 Domain Family Member 27, Pseudogene 2 3 5
  • Uncharacterized Protein TBC1D27 3
  • TBC1 Domain Family Member 27 2
  • TBC1D27 3

External Ids for TBC1D27P Gene

Previous HGNC Symbols for TBC1D27P Gene

  • TBC1D27

Summaries for TBC1D27P Gene

GeneCards Summary for TBC1D27P Gene

TBC1D27P (TBC1 Domain Family Member 27, Pseudogene) is a Pseudogene.

Additional gene information for TBC1D27P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TBC1D27P Gene

Genomics for TBC1D27P Gene

GeneHancer (GH) Regulatory Elements for TBC1D27P Gene

Promoters and enhancers for TBC1D27P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I016946 Enhancer 0.6 dbSUPER 9 -12.7 -12717 1.8 SMARCA5 ZNF146 TRIM22 CHD4 SP1 ZNF217 TARDBP IKZF1 ZNF143 ZNF24 GC17M016946 TBC1D27P TNFRSF13B
GH17I016962 Enhancer 0.8 dbSUPER 5.2 -30.5 -30470 4.8 HDGF PKNOX1 BATF KLF5 IRF4 ZNF207 ZNF143 ATF7 ETV6 FOS MPRIP PLD6 TBC1D27P KRT17P4 TNFRSF13B GC17M016946
GH17I016940 Enhancer 0.4 ENCODE 9.9 -5.7 -5743 0.2 CTCF ZIC2 GC17M016939 MPRIP MPRIP-AS1 TBC1D27P PIR43493 TNFRSF13B
GH17I016960 Enhancer 0.4 dbSUPER 9.7 -26.6 -26585 2.1 ZNF316 KLF5 RUNX3 PLD6 TBC1D27P TNFRSF13B GC17M016946
GH17I016909 Enhancer 0.4 Ensembl ENCODE 8.4 +23.8 23793 3.4 LINC02090 TBC1D27P KRT17P4 ADORA2B ENSG00000265853
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TBC1D27P on UCSC Golden Path with GeneCards custom track

Genomic Locations for TBC1D27P Gene

Genomic Locations for TBC1D27P Gene
chr17:16,922,915-16,934,839
(GRCh38/hg38)
Size:
11,925 bases
Orientation:
Minus strand
chr17:16,826,229-16,838,153
(GRCh37/hg19)

Genomic View for TBC1D27P Gene

Genes around TBC1D27P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TBC1D27P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TBC1D27P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBC1D27P Gene

Proteins for TBC1D27P Gene

Post-translational modifications for TBC1D27P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TBC1D27P Gene

Domains & Families for TBC1D27P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TBC1D27P Gene

Function for TBC1D27P Gene

Phenotypes From GWAS Catalog for TBC1D27P Gene

Phenotypes for TBC1D27P Gene

genes like me logo Genes that share phenotypes with TBC1D27P: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TBC1D27P Gene

Localization for TBC1D27P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TBC1D27P Gene

Pathways & Interactions for TBC1D27P Gene

SuperPathways for TBC1D27P Gene

No Data Available

Interacting Proteins for TBC1D27P Gene

Gene Ontology (GO) - Biological Process for TBC1D27P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TBC1D27P Gene

Drugs & Compounds for TBC1D27P Gene

No Compound Related Data Available

Transcripts for TBC1D27P Gene

mRNA/cDNA for TBC1D27P Gene

(13) REFSEQ mRNAs :
(3) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TBC1D27P Gene

No ASD Table

Relevant External Links for TBC1D27P Gene

GeneLoc Exon Structure for
TBC1D27P
ECgene alternative splicing isoforms for
TBC1D27P

Expression for TBC1D27P Gene

NURSA nuclear receptor signaling pathways regulating expression of TBC1D27P Gene:

TBC1D27P
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TBC1D27P Gene

Orthologs for TBC1D27P Gene

Evolution for TBC1D27P Gene

ENSEMBL:
Gene Tree for TBC1D27P (if available)
TreeFam:
Gene Tree for TBC1D27P (if available)

No data available for Orthologs for TBC1D27P Gene

Paralogs for TBC1D27P Gene

No data available for Paralogs for TBC1D27P Gene

Variants for TBC1D27P Gene

Sequence variations from dbSNP and Humsavar for TBC1D27P Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000313927 -- 16,924,709(-) C/T intron_variant
rs1000707808 -- 16,928,355(-) T/A upstream_transcript_variant
rs1001261985 -- 16,928,585(-) TT/TTT upstream_transcript_variant
rs1001421194 -- 16,923,303(-) A/T 3_prime_UTR_variant
rs1001466905 -- 16,924,683(-) T/C intron_variant

Additional Variant Information for TBC1D27P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TBC1D27P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TBC1D27P Gene

Disorders for TBC1D27P Gene

Additional Disease Information for TBC1D27P

No disorders were found for TBC1D27P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TBC1D27P Gene

Publications for TBC1D27P Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 58
  3. Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity. (PMID: 19773279) Hosgood HD … Lan Q (Occupational and environmental medicine 2009) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for TBC1D27P Gene

Sources for TBC1D27P Gene

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