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Aliases for TBC1D27 Gene

Aliases for TBC1D27 Gene

  • TBC1 Domain Family Member 27 2 3 5
  • TBC1 Domain Family, Member 27 2

External Ids for TBC1D27 Gene

Previous GeneCards Identifiers for TBC1D27 Gene

  • GC17M016767
  • GC17M016701
  • GC17M016761
  • GC17M016514
  • GC17M016828

Summaries for TBC1D27 Gene

GeneCards Summary for TBC1D27 Gene

TBC1D27 (TBC1 Domain Family Member 27) is a Pseudogene.

Additional gene information for TBC1D27 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TBC1D27 Gene

Genomics for TBC1D27 Gene

Regulatory Elements for TBC1D27 Gene

Enhancers for TBC1D27 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H016946 0.7 dbSUPER 9 -12.7 -12718 1 SMARCA5 ZNF146 TRIM22 CHD4 ZNF217 SP1 IKZF1 TARDBP ZNF143 ZNF24 TBC1D27 GC17M016946 TNFRSF13B
GH17H016960 0.5 dbSUPER 9.7 -26.6 -26585 2 ZNF316 RUNX3 MAFK PLD6 TBC1D27 TNFRSF13B GC17M016946
GH17H016909 0.5 Ensembl ENCODE 8.4 +23.8 23794 3 LINC02090 TBC1D27 KRT17P4 ADORA2B ENSG00000265853
GH17H016962 0.8 dbSUPER 5.2 -30.5 -30471 4 HDGF PKNOX1 TBL1XR1 BATF ZNF143 ZNF207 FOS ATF7 ETV6 RUNX3 MPRIP PLD6 TBC1D27 KRT17P4 TNFRSF13B GC17M016946
GH17H016940 0.4 ENCODE 9.9 -5.7 -5743 0 ZIC2 MPRIP MPRIP-AS1 TBC1D27 PIR43493 GC17M016939
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TBC1D27 on UCSC Golden Path with GeneCards custom track

Genomic Location for TBC1D27 Gene

Chromosome:
17
Start:
16,922,915 bp from pter
End:
16,934,839 bp from pter
Size:
11,925 bases
Orientation:
Minus strand

Genomic View for TBC1D27 Gene

Genes around TBC1D27 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TBC1D27 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TBC1D27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBC1D27 Gene

Proteins for TBC1D27 Gene

Post-translational modifications for TBC1D27 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TBC1D27 Gene

Domains & Families for TBC1D27 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TBC1D27 Gene

Function for TBC1D27 Gene

Phenotypes From GWAS Catalog for TBC1D27 Gene

Phenotypes for TBC1D27 Gene

genes like me logo Genes that share phenotypes with TBC1D27: view

Animal Model Products

CRISPR Products

miRNA for TBC1D27 Gene

miRTarBase miRNAs that target TBC1D27

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TBC1D27 Gene

Localization for TBC1D27 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TBC1D27 Gene

Pathways & Interactions for TBC1D27 Gene

SuperPathways for TBC1D27 Gene

No Data Available

Interacting Proteins for TBC1D27 Gene

Gene Ontology (GO) - Biological Process for TBC1D27 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TBC1D27 Gene

Drugs & Compounds for TBC1D27 Gene

No Compound Related Data Available

Transcripts for TBC1D27 Gene

mRNA/cDNA for TBC1D27 Gene

(13) REFSEQ mRNAs :
(3) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for TBC1D27 Gene

No ASD Table

Relevant External Links for TBC1D27 Gene

GeneLoc Exon Structure for
TBC1D27
ECgene alternative splicing isoforms for
TBC1D27

Expression for TBC1D27 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TBC1D27 Gene

mRNA differential expression in normal tissues according to GTEx for TBC1D27 Gene

This gene is overexpressed in Spleen (x13.5) and Small Intestine - Terminal Ileum (x11.3).

NURSA nuclear receptor signaling pathways regulating expression of TBC1D27 Gene:

TBC1D27
genes like me logo Genes that share expression patterns with TBC1D27: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TBC1D27 Gene

Orthologs for TBC1D27 Gene

Evolution for TBC1D27 Gene

ENSEMBL:
Gene Tree for TBC1D27 (if available)
TreeFam:
Gene Tree for TBC1D27 (if available)

No data available for Orthologs for TBC1D27 Gene

Paralogs for TBC1D27 Gene

No data available for Paralogs for TBC1D27 Gene

Variants for TBC1D27 Gene

Sequence variations from dbSNP and Humsavar for TBC1D27 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000313927 -- 16,924,709(+) TGCCA(C/T)CACAC intron-variant
rs1000707808 -- 16,928,355(+) TTGGA(A/T)CTCTG upstream-variant-2KB
rs1001261985 -- 16,928,584(+) TGGGC(-/T)TTCAA upstream-variant-2KB
rs1001421194 -- 16,923,303(+) GGGGC(A/T)CTCAG utr-variant-3-prime
rs1001466905 -- 16,924,683(+) GGACC(C/T)GCACT intron-variant

Relevant External Links for TBC1D27 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TBC1D27

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TBC1D27 Gene

Disorders for TBC1D27 Gene

Relevant External Links for TBC1D27

Genetic Association Database (GAD)
TBC1D27
Human Genome Epidemiology (HuGE) Navigator
TBC1D27
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TBC1D27

No disorders were found for TBC1D27 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TBC1D27 Gene

Publications for TBC1D27 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 45 60
  2. Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity. (PMID: 19773279) Hosgood HD … Lan Q (Occupational and environmental medicine 2009) 3 45 60
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 60
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for TBC1D27 Gene

Sources for TBC1D27 Gene

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