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Aliases for TBC1D15 Gene

Aliases for TBC1D15 Gene

  • TBC1 Domain Family Member 15 2 3 5
  • GTPase-Activating Protein RAB7 3 4
  • GAP For RAB7 3 4
  • RAB7-GAP 3 4
  • Tre-2-Budding Uninhibited By Benzimidazole-Cell Division Cycle 16 Domain, Domain Family Member 15 3
  • Tre2/Bub2/Cdc16 Domain Family Member 15 3
  • TBC1 Domain Family, Member 15 2

External Ids for TBC1D15 Gene

Previous GeneCards Identifiers for TBC1D15 Gene

  • GC12P070519
  • GC12P072233
  • GC12P069283

Summaries for TBC1D15 Gene

Entrez Gene Summary for TBC1D15 Gene

  • This gene encodes a member of the Ras-like proteins in brain-GTPase activating protein superfamily that share a conserved Tre-2/Bub2/Cdc16 domain. The encoded protein interacts with Ras-like protein in brain 5A and may function as a regulator of intracellular trafficking. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Apr 2009]

GeneCards Summary for TBC1D15 Gene

TBC1D15 (TBC1 Domain Family Member 15) is a Protein Coding gene. Among its related pathways are Vesicle-mediated transport. GO annotations related to this gene include GTPase activator activity. An important paralog of this gene is MIR4750.

UniProtKB/Swiss-Prot for TBC1D15 Gene

  • Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6 (By similarity).

Gene Wiki entry for TBC1D15 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TBC1D15 Gene

Genomics for TBC1D15 Gene

Regulatory Elements for TBC1D15 Gene

Enhancers for TBC1D15 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F071864 0.5 Ensembl ENCODE 24.8 +26.0 26033 2.1 GLIS1 ZNF600 EBF1 ZIC2 TBC1D15 MRS2P2 TPH2
GH12F071869 0.2 Ensembl 21.5 +30.4 30394 2.2 CTCF MTA2 JUN CEBPB JUNB RAD21 JUND SMARCA4 IKZF1 SMC3 TBC1D15 MRS2P2 TPH2
GH12F071838 0.4 ENCODE 12.7 +0.3 275 3.5 PKNOX1 CREB3L1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 TBC1D15 MRS2P2
GH12F071780 0.5 ENCODE 12.7 -59.0 -59003 1.1 CTCF ZNF654 TEAD4 SMC3 REST RAD21 TBC1D15 RAB21 TPH2 ENSG00000257410
GH12F071782 0.4 ENCODE 12.7 -57.4 -57368 0.5 IKZF1 JUNB TBC1D15 RAB21 TPH2 ENSG00000257410
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TBC1D15 on UCSC Golden Path with GeneCards custom track

Promoters for TBC1D15 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001464804 393 2201 PKNOX1 CREB3L1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1

Genomic Location for TBC1D15 Gene

Chromosome:
12
Start:
71,839,707 bp from pter
End:
71,927,248 bp from pter
Size:
87,542 bases
Orientation:
Plus strand

Genomic View for TBC1D15 Gene

Genes around TBC1D15 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TBC1D15 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TBC1D15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBC1D15 Gene

Proteins for TBC1D15 Gene

  • Protein details for TBC1D15 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TC07-TBC15_HUMAN
    Recommended name:
    TBC1 domain family member 15
    Protein Accession:
    Q8TC07
    Secondary Accessions:
    • B4DMT9
    • B9A6L6
    • J3KNI9
    • Q9HA83

    Protein attributes for TBC1D15 Gene

    Size:
    691 amino acids
    Molecular mass:
    79491 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for TBC1D15 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TBC1D15 Gene

Post-translational modifications for TBC1D15 Gene

  • Ubiquitination at Lys 10, Lys 26, Lys 68, Lys 81, Lys 107, Lys 125, Lys 239, Lys 240, Lys 288, Lys 324, Lys 339, Lys 369, Lys 379, Lys 580, Lys 589, Lys 200, and Lys 220
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for TBC1D15 Gene

Domains & Families for TBC1D15 Gene

Protein Domains for TBC1D15 Gene

Suggested Antigen Peptide Sequences for TBC1D15 Gene

Graphical View of Domain Structure for InterPro Entry

Q8TC07

UniProtKB/Swiss-Prot:

TBC15_HUMAN :
  • Contains 1 Rab-GAP TBC domain.
Domain:
  • Contains 1 Rab-GAP TBC domain.
genes like me logo Genes that share domains with TBC1D15: view

No data available for Gene Families for TBC1D15 Gene

Function for TBC1D15 Gene

Molecular function for TBC1D15 Gene

UniProtKB/Swiss-Prot Function:
Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6 (By similarity).

Gene Ontology (GO) - Molecular Function for TBC1D15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005096 GTPase activator activity ISS --
GO:0005515 protein binding IPI 20562859
GO:0017137 Rab GTPase binding IBA --
genes like me logo Genes that share ontologies with TBC1D15: view
genes like me logo Genes that share phenotypes with TBC1D15: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TBC1D15 Gene

Localization for TBC1D15 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TBC1D15 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TBC1D15 Gene COMPARTMENTS Subcellular localization image for TBC1D15 gene
Compartment Confidence
extracellular 5
cytosol 3
mitochondrion 3
nucleus 2
endosome 1
lysosome 1
vacuole 1

Gene Ontology (GO) - Cellular Components for TBC1D15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005622 intracellular IBA --
GO:0005737 cytoplasm ISS --
GO:0005739 mitochondrion IEA --
GO:0012505 endomembrane system IBA --
genes like me logo Genes that share ontologies with TBC1D15: view

Pathways & Interactions for TBC1D15 Gene

SuperPathways for TBC1D15 Gene

genes like me logo Genes that share pathways with TBC1D15: view

Pathways by source for TBC1D15 Gene

2 Reactome pathways for TBC1D15 Gene

Gene Ontology (GO) - Biological Process for TBC1D15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006886 intracellular protein transport IBA --
GO:0031338 regulation of vesicle fusion IBA --
GO:0043087 regulation of GTPase activity ISS --
GO:0090630 activation of GTPase activity IBA --
GO:1902017 NOT regulation of cilium assembly IMP 17646400
genes like me logo Genes that share ontologies with TBC1D15: view

No data available for SIGNOR curated interactions for TBC1D15 Gene

Transcripts for TBC1D15 Gene

Unigene Clusters for TBC1D15 Gene

TBC1 domain family, member 15:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TBC1D15 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b
SP1: - -
SP2: - - -
SP3: - - - -
SP4: -
SP5:

Relevant External Links for TBC1D15 Gene

GeneLoc Exon Structure for
TBC1D15
ECgene alternative splicing isoforms for
TBC1D15

Expression for TBC1D15 Gene

mRNA expression in normal human tissues for TBC1D15 Gene

Protein differential expression in normal tissues from HIPED for TBC1D15 Gene

This gene is overexpressed in Bone (24.4), Lymph node (10.3), and Peripheral blood mononuclear cells (8.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TBC1D15 Gene



Protein tissue co-expression partners for TBC1D15 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TBC1D15 Gene:

TBC1D15

SOURCE GeneReport for Unigene cluster for TBC1D15 Gene:

Hs.284630
genes like me logo Genes that share expression patterns with TBC1D15: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TBC1D15 Gene

Orthologs for TBC1D15 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TBC1D15 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TBC1D15 34 35
  • 99.66 (n)
dog
(Canis familiaris)
Mammalia TBC1D15 34 35
  • 93.97 (n)
cow
(Bos Taurus)
Mammalia TBC1D15 34 35
  • 93.29 (n)
rat
(Rattus norvegicus)
Mammalia Tbc1d15 34
  • 88.43 (n)
mouse
(Mus musculus)
Mammalia Tbc1d15 34 16 35
  • 87.58 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia TBC1D15 35
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TBC1D15 35
  • 53 (a)
OneToOne
chicken
(Gallus gallus)
Aves TBC1D15 34 35
  • 78.93 (n)
lizard
(Anolis carolinensis)
Reptilia TBC1D15 35
  • 80 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tbc1d15 34
  • 74.92 (n)
zebrafish
(Danio rerio)
Actinopterygii tbc1d15 34 35
  • 65.32 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007911 34
  • 47.59 (n)
fruit fly
(Drosophila melanogaster)
Insecta Tbc1d15-17 34
  • 46.1 (n)
CG11490 35
  • 28 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea tbc-15 34 35
  • 55.65 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes GYP7 35 37
  • 25 (a)
OneToMany
wheat
(Triticum aestivum)
Liliopsida Ta.12532 34
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4773 35
  • 42 (a)
OneToMany
Species where no ortholog for TBC1D15 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for TBC1D15 Gene

ENSEMBL:
Gene Tree for TBC1D15 (if available)
TreeFam:
Gene Tree for TBC1D15 (if available)

Paralogs for TBC1D15 Gene

Paralogs for TBC1D15 Gene

genes like me logo Genes that share paralogs with TBC1D15: view

Variants for TBC1D15 Gene

Sequence variations from dbSNP and Humsavar for TBC1D15 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10160863 -- 71,847,057(+) ctggc(A/C)TATAC intron-variant
rs10160905 -- 71,879,194(+) ATGGC(G/T)CAATC intron-variant
rs10161072 -- 71,879,102(+) TGACT(A/G)GAGTC intron-variant
rs1035778 -- 71,870,454(-) CCTTT(A/C)CTGAA intron-variant
rs10467176 -- 71,893,108(+) CTGTT(A/G)AAATA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TBC1D15 Gene

Variant ID Type Subtype PubMed ID
esv2657617 CNV deletion 23128226
esv2662131 CNV deletion 23128226
esv2759907 CNV gain 17122850
esv3433516 CNV insertion 20981092
esv35030 CNV gain 17911159
esv3629916 CNV gain 21293372
esv3629919 CNV loss 21293372
esv3629920 CNV loss 21293372
esv3892218 CNV gain 25118596
nsv1054578 CNV loss 25217958
nsv518498 CNV loss 19592680
nsv559329 CNV loss 21841781
nsv559361 CNV loss 21841781
nsv818924 CNV gain 17921354
nsv8988 CNV loss 18304495

Variation tolerance for TBC1D15 Gene

Residual Variation Intolerance Score: 5.99% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.49; 29.08% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TBC1D15 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TBC1D15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TBC1D15 Gene

Disorders for TBC1D15 Gene

Relevant External Links for TBC1D15

Genetic Association Database (GAD)
TBC1D15
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TBC1D15

No disorders were found for TBC1D15 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TBC1D15 Gene

Publications for TBC1D15 Gene

  1. Identification and characterization of a novel Tre-2/Bub2/Cdc16 (TBC) protein that possesses Rab3A-GAP activity. (PMID: 19077034) Ishibashi K. … Fukuda M. (Genes Cells 2009) 3 4 64
  2. A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PMID: 16964243) Beausoleil S.A. … Gygi S.P. (Nat. Biotechnol. 2006) 3 4 64
  3. TBC domain family, member 15 is a novel mammalian Rab GTPase-activating protein with substrate preference for Rab7. (PMID: 16055087) Zhang X.M. … Rowe T. (Biochem. Biophys. Res. Commun. 2005) 2 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for TBC1D15 Gene

Sources for TBC1D15 Gene

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