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Aliases for TBC1D10B Gene

Aliases for TBC1D10B Gene

  • TBC1 Domain Family Member 10B 2 3 5
  • Rab27A-GAP-Beta 3 4
  • TBC1 Domain Family, Member 10B 2
  • Rab27A-GAPbeta 3
  • EPI64B 3
  • FP2461 3

External Ids for TBC1D10B Gene

Previous GeneCards Identifiers for TBC1D10B Gene

  • GC16M030277
  • GC16M030279
  • GC16M027930

Summaries for TBC1D10B Gene

Entrez Gene Summary for TBC1D10B Gene

  • Small G proteins of the RAB family (see MIM 179508) function in intracellular vesicle trafficking by switching from the GTP-bound state to the GDP-bound state with the assistance of guanine nucleotide exchange factors (GEFs; see MIM 609700) and GTPase-activating proteins (GAPs). TBC1D10B functions as a GAP for several proteins of the Rab family (Ishibashi et al., 2009 [PubMed 19077034]).[supplied by OMIM, Nov 2010]

GeneCards Summary for TBC1D10B Gene

TBC1D10B (TBC1 Domain Family Member 10B) is a Protein Coding gene. Among its related pathways are Vesicle-mediated transport and TBC/RABGAPs. GO annotations related to this gene include GTPase activator activity. An important paralog of this gene is TBC1D10A.

UniProtKB/Swiss-Prot for TBC1D10B Gene

  • Acts as GTPase-activating protein for RAB3A, RAB22A, RAB27A, AND RAB35. Does not act on RAB2A and RAB6A.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TBC1D10B Gene

Genomics for TBC1D10B Gene

Regulatory Elements for TBC1D10B Gene

Enhancers for TBC1D10B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G030416 1.7 FANTOM5 Ensembl ENCODE 11.4 -47.5 -47546 2.4 CREB3L1 AGO1 DMAP1 YY1 SLC30A9 ZNF143 ZNF416 ZNF263 SP3 NFYC CD2BP2 SEPT1 TBC1D10B MYLPF ZNF668 ENSG00000239791 ZNF688 ZNF785 ZNF689 HIRIP3
GH16G030398 1.4 Ensembl ENCODE 11.9 -30.1 -30132 3.8 FOXA2 MLX CREB3L1 AGO1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 TBC1D10B SMG1P5 CD2BP2 SEPHS2 PIR39668 SEPT1 GC16P030401
GH16G030547 1.5 Ensembl ENCODE dbSUPER 10.6 -178.7 -178709 2.4 PKNOX1 ATF1 ARNT FEZF1 GLI4 ZNF2 TCF12 FOS JUNB NCOA1 ZNF689 ZNF764 ZNF688 ENSG00000239791 ZNF785 DCTPP1 ITGAL ENSG00000222701 SEPHS2 ZNF768
GH16G030074 1.4 ENCODE dbSUPER 11 +293.6 293580 4.6 PKNOX1 CREB3L1 AGO1 SIN3A ARID4B DMAP1 ZNF2 YY1 ZNF143 FOS YPEL3 GDPD3 LOC730183 MIR762HG DOC2A ENSG00000260114 TBC1D10B BCL7C ENSG00000247735 ZNF785
GH16G030393 1.2 ENCODE 12 -24.9 -24863 2.9 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YBX1 SLC30A9 ZNF416 ZNF143 BCL7C SMG1P2 ENSG00000260304 ZNF764 ZNF785 TBC1D10B ENSG00000199787 DCTPP1 CD2BP2 MYLPF
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TBC1D10B on UCSC Golden Path with GeneCards custom track

Promoters for TBC1D10B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000085187 564 3401 HDGF PKNOX1 FOXA2 ARNT CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 ZNF2

Genomic Location for TBC1D10B Gene

Chromosome:
16
Start:
30,357,101 bp from pter
End:
30,370,264 bp from pter
Size:
13,164 bases
Orientation:
Minus strand

Genomic View for TBC1D10B Gene

Genes around TBC1D10B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TBC1D10B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TBC1D10B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBC1D10B Gene

Proteins for TBC1D10B Gene

  • Protein details for TBC1D10B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4KMP7-TB10B_HUMAN
    Recommended name:
    TBC1 domain family member 10B
    Protein Accession:
    Q4KMP7
    Secondary Accessions:
    • B9A6L0
    • Q6IN54
    • Q6P530
    • Q71RG7
    • Q86VC5
    • Q9H8Z2
    • Q9NUN6
    • Q9UFP2

    Protein attributes for TBC1D10B Gene

    Size:
    808 amino acids
    Molecular mass:
    87199 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH50523.2; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH63112.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH72453.2; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH93814.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH93816.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH98419.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAQ15206.1; Type=Frameshift; Positions=154, 379, 401; Evidence={ECO:0000305}; Sequence=BAA92086.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB14454.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAH16638.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305}; Sequence=EAW52256.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for TBC1D10B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TBC1D10B Gene

Post-translational modifications for TBC1D10B Gene

  • Ubiquitination at Lys398 and posLast=405405
  • Modification sites at PhosphoSitePlus

Other Protein References for TBC1D10B Gene

No data available for DME Specific Peptides for TBC1D10B Gene

Domains & Families for TBC1D10B Gene

Protein Domains for TBC1D10B Gene

Suggested Antigen Peptide Sequences for TBC1D10B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TBC1D10B: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TBC1D10B Gene

Function for TBC1D10B Gene

Molecular function for TBC1D10B Gene

UniProtKB/Swiss-Prot Function:
Acts as GTPase-activating protein for RAB3A, RAB22A, RAB27A, AND RAB35. Does not act on RAB2A and RAB6A.

Gene Ontology (GO) - Molecular Function for TBC1D10B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005096 GTPase activator activity IDA,IEA 19077034
GO:0005515 protein binding IPI 22354992
GO:0017137 Rab GTPase binding IBA --
genes like me logo Genes that share ontologies with TBC1D10B: view
genes like me logo Genes that share phenotypes with TBC1D10B: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TBC1D10B Gene

Localization for TBC1D10B Gene

Subcellular locations from UniProtKB/Swiss-Prot for TBC1D10B Gene

Cytoplasm. Note=In melanocytes, located at the periphery of cells.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TBC1D10B gene
Compartment Confidence
plasma membrane 5
cytosol 4
nucleus 2
peroxisome 1

Gene Ontology (GO) - Cellular Components for TBC1D10B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IBA --
GO:0005737 cytoplasm IEA --
GO:0005829 cytosol IEA --
GO:0005886 plasma membrane IDA 17562788
GO:0012505 endomembrane system IBA --
genes like me logo Genes that share ontologies with TBC1D10B: view

Pathways & Interactions for TBC1D10B Gene

genes like me logo Genes that share pathways with TBC1D10B: view

Pathways by source for TBC1D10B Gene

3 Reactome pathways for TBC1D10B Gene

Gene Ontology (GO) - Biological Process for TBC1D10B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006886 intracellular protein transport IBA --
GO:0007165 signal transduction IEA --
GO:0031338 regulation of vesicle fusion IBA --
GO:0042147 retrograde transport, endosome to Golgi IMP 17562788
GO:0043087 regulation of GTPase activity IDA 19077034
genes like me logo Genes that share ontologies with TBC1D10B: view

No data available for SIGNOR curated interactions for TBC1D10B Gene

Transcripts for TBC1D10B Gene

Unigene Clusters for TBC1D10B Gene

TBC1 domain family, member 10B:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TBC1D10B Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7a · 7b · 7c ^ 8a · 8b ^ 9
SP1: - - - -
SP2: - - -
SP3: - - - - - -
SP4: - - - -
SP5: -
SP6:

Relevant External Links for TBC1D10B Gene

GeneLoc Exon Structure for
TBC1D10B
ECgene alternative splicing isoforms for
TBC1D10B

Expression for TBC1D10B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TBC1D10B Gene

Protein differential expression in normal tissues from HIPED for TBC1D10B Gene

This gene is overexpressed in Monocytes (11.5), Frontal cortex (11.2), Peripheral blood mononuclear cells (10.5), and Amniocyte (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TBC1D10B Gene



Protein tissue co-expression partners for TBC1D10B Gene

NURSA nuclear receptor signaling pathways regulating expression of TBC1D10B Gene:

TBC1D10B

SOURCE GeneReport for Unigene cluster for TBC1D10B Gene:

Hs.632182

Evidence on tissue expression from TISSUES for TBC1D10B Gene

  • Nervous system(4.4)
  • Liver(4.1)
genes like me logo Genes that share expression patterns with TBC1D10B: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for TBC1D10B Gene

Orthologs for TBC1D10B Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for TBC1D10B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TBC1D10B 34 35
  • 99.13 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia TBC1D10B 35
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TBC1D10B 34 35
  • 89.42 (n)
dog
(Canis familiaris)
Mammalia TBC1D10B 35
  • 89 (a)
OneToOne
LOC489935 34
  • 87.82 (n)
rat
(Rattus norvegicus)
Mammalia Tbc1d10b 34
  • 87.54 (n)
mouse
(Mus musculus)
Mammalia Tbc1d10b 34 16 35
  • 86.88 (n)
oppossum
(Monodelphis domestica)
Mammalia TBC1D10B 35
  • 81 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TBC1D10B 35
  • 75 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.29809 34
zebrafish
(Danio rerio)
Actinopterygii TBC1D10B 35
  • 49 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta wkd 35
  • 40 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea tbc-10 35
  • 38 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes MSB4 35
  • 20 (a)
ManyToMany
MSB3 35
  • 17 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6221 35
  • 51 (a)
OneToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.929 34
Species where no ortholog for TBC1D10B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for TBC1D10B Gene

ENSEMBL:
Gene Tree for TBC1D10B (if available)
TreeFam:
Gene Tree for TBC1D10B (if available)

Paralogs for TBC1D10B Gene

(5) SIMAP similar genes for TBC1D10B Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with TBC1D10B: view

Variants for TBC1D10B Gene

Sequence variations from dbSNP and Humsavar for TBC1D10B Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000062567 -- 30,364,676(+) GCAAG(C/T)TCTTC intron-variant
rs1000240179 -- 30,370,833(+) CGAGT(-/AA)GAGGT intron-variant, upstream-variant-2KB
rs1000653113 -- 30,369,674(+) GCAAG(A/C/G)GGGGG upstream-variant-2KB, reference, synonymous-codon
rs1000808286 -- 30,362,849(+) CTGGC(C/T)AACAT intron-variant
rs1000947587 -- 30,366,666(+) TAAAG(G/T)ACTCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TBC1D10B Gene

Variant ID Type Subtype PubMed ID
esv26390 CNV loss 19812545
esv2758642 CNV gain 17122850
nsv827612 CNV gain 20364138

Variation tolerance for TBC1D10B Gene

Gene Damage Index Score: 8.24; 85.02% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TBC1D10B Gene

Human Gene Mutation Database (HGMD)
TBC1D10B
SNPedia medical, phenotypic, and genealogical associations of SNPs for
TBC1D10B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TBC1D10B Gene

Disorders for TBC1D10B Gene

Relevant External Links for TBC1D10B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TBC1D10B

No disorders were found for TBC1D10B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TBC1D10B Gene

Publications for TBC1D10B Gene

  1. Regulation of exosome secretion by Rab35 and its GTPase-activating proteins TBC1D10A-C. (PMID: 20404108) Hsu C. … Simons M. (J. Cell Biol. 2010) 2 3 64
  2. Identification and characterization of a novel Tre-2/Bub2/Cdc16 (TBC) protein that possesses Rab3A-GAP activity. (PMID: 19077034) Ishibashi K. … Fukuda M. (Genes Cells 2009) 3 4 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation. (PMID: 25921289) Emdal K.B. … Olsen J.V. (Sci Signal 2015) 3 64
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64

Products for TBC1D10B Gene

Sources for TBC1D10B Gene

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