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Aliases for TBATA Gene

Aliases for TBATA Gene

  • Thymus, Brain And Testes Associated 2 3
  • C10orf27 3 4 6
  • Stromal Protein Associated With Thymii And Lymph Node Homolog 3 4
  • Thymus, Brain And Testes-Associated Protein 3 4
  • Protein SPATIAL 3 4
  • Spatial 3 4
  • Chromosome 10 Open Reading Frame 27 2
  • Protein TBATA 3

External Ids for TBATA Gene

Previous Symbols for TBATA Gene

  • C10orf27

Summaries for TBATA Gene

GeneCards Summary for TBATA Gene

TBATA (Thymus, Brain And Testes Associated) is a Protein Coding gene.

UniProtKB/Swiss-Prot for TBATA Gene

  • May play a role in spermatid differentiation. Modulates thymic stromal cell proliferation and thymus function.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TBATA Gene

Genomics for TBATA Gene

Genomic Location for TBATA Gene

Start:
70,771,229 bp from pter
End:
70,785,401 bp from pter
Size:
14,173 bases
Orientation:
Minus strand

Genomic View for TBATA Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TBATA Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TBATA Gene

No data available for Regulatory Elements for TBATA Gene

Proteins for TBATA Gene

  • Protein details for TBATA Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96M53-TBATA_HUMAN
    Recommended name:
    Protein TBATA
    Protein Accession:
    Q96M53
    Secondary Accessions:
    • A4QPA8
    • B2RPQ2
    • Q5T4G2

    Protein attributes for TBATA Gene

    Size:
    351 amino acids
    Molecular mass:
    39460 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for TBATA Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TBATA Gene

Proteomics data for TBATA Gene at MOPED

Post-translational modifications for TBATA Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TBATA Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TBATA Gene

Domains for TBATA Gene

Protein Domains for TBATA Gene

ProtoNet:

UniProtKB/Swiss-Prot:

TBATA_HUMAN
Family:
  • Belongs to the TBATA family.:
    • Q96M53
genes like me logo Genes that share domains with TBATA: view

No data available for Gene Families for TBATA Gene

Function for TBATA Gene

Molecular function for TBATA Gene

UniProtKB/Swiss-Prot Function: May play a role in spermatid differentiation. Modulates thymic stromal cell proliferation and thymus function.

Gene Ontology (GO) - Molecular Function for TBATA Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with TBATA: view
genes like me logo Genes that share phenotypes with TBATA: view

Animal Models for TBATA Gene

MGI Knock Outs for TBATA:

miRNA for TBATA Gene

miRTarBase miRNAs that target TBATA

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for TBATA Gene

Localization for TBATA Gene

Subcellular locations from UniProtKB/Swiss-Prot for TBATA Gene

Cytoplasm, cytosol.

Gene Ontology (GO) - Cellular Components for TBATA Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005829 cytosol ISS --
genes like me logo Genes that share ontologies with TBATA: view

Pathways for TBATA Gene

SuperPathways for TBATA Gene

No Data Available

Interacting Proteins for TBATA Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000299290%0d%0a9606.ENSP00000354340%0d%0a
Selected Interacting proteins: ENSP00000299290 for TBATA Gene via STRING

Symbol External ID(s) Details
UBA3

Gene Ontology (GO) - Biological Process for TBATA Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007275 multicellular organismal development IEA --
GO:0007283 spermatogenesis IEA --
GO:0030154 cell differentiation IEA --
genes like me logo Genes that share ontologies with TBATA: view

No data available for Pathways by source for TBATA Gene

Transcripts for TBATA Gene

Unigene Clusters for TBATA Gene

Thymus, brain and testes associated:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TBATA Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c ^ 7a · 7b · 7c ^ 8a · 8b · 8c · 8d · 8e ^ 9a · 9b · 9c ^ 10a · 10b · 10c · 10d · 10e ^
SP1: - - - - - -
SP2: - - - -
SP3:
SP4: - - - - - - - -
SP5: - - - - - - - -
SP6: - -
SP7: - -
SP8: - - -
SP9: - - - -
SP10: - -
SP11: - - - - - - - - - -
SP12:
SP13: - - -
SP14: - - -

ExUns: 11 ^ 12a · 12b
SP1: -
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:

Relevant External Links for TBATA Gene

GeneLoc Exon Structure for
TBATA
ECgene alternative splicing isoforms for
TBATA

Expression for TBATA Gene

mRNA expression in normal human tissues for TBATA Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TBATA Gene

This gene is overexpressed in Testis (47.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for TBATA Gene

SOURCE GeneReport for Unigene cluster for TBATA Gene Hs.386698

genes like me logo Genes that share expressions with TBATA: view

Orthologs for TBATA Gene

This gene was present in the common ancestor of chordates.

Orthologs for TBATA Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TBATA 36
  • 98.67 (n)
  • 97.55 (a)
TBATA 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TBATA 36
  • 81.91 (n)
  • 75.61 (a)
TBATA 37
  • 74 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TBATA 36
  • 81.32 (n)
  • 76.15 (a)
TBATA 37
  • 74 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tbata 36
  • 74.22 (n)
  • 65.99 (a)
Tbata 16
Tbata 37
  • 56 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TBATA 37
  • 42 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TBATA 37
  • 41 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tbata 36
  • 72.53 (n)
  • 62.82 (a)
lizard
(Anolis carolinensis)
Reptilia TBATA 37
  • 37 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC101731705 36
  • 54.6 (n)
  • 50 (a)
Str.15612 36
zebrafish
(Danio rerio)
Actinopterygii tbata 36
  • 48.71 (n)
  • 39.73 (a)
tbata 37
  • 33 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.7069 37
  • 23 (a)
OneToOne
Species with no ortholog for TBATA:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TBATA Gene

ENSEMBL:
Gene Tree for TBATA (if available)
TreeFam:
Gene Tree for TBATA (if available)

Paralogs for TBATA Gene

Selected SIMAP similar genes for TBATA Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with TBATA: view

No data available for Paralogs for TBATA Gene

Variants for TBATA Gene

Sequence variations from dbSNP and Humsavar for TBATA Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs1538677 -- 70,783,823(-) TCTCA(C/T)ACTGA intron-variant, upstream-variant-2KB
rs1538680 -- 70,781,308(-) GCTGC(A/T)GTGGG intron-variant
rs1880055 -- 70,781,091(+) CTCCT(C/G)TCCTA intron-variant
rs2153376 -- 70,787,192(-) ACTCC(A/G)CAAAG upstream-variant-2KB
rs2185348 -- 70,787,391(-) AACTA(A/G)AGATT upstream-variant-2KB

Relevant External Links for TBATA Gene

HapMap Linkage Disequilibrium report
TBATA

No data available for Structural Variations from Database of Genomic Variants (DGV) for TBATA Gene

Disorders for TBATA Gene

No disorders were found for TBATA Gene.

No data available for UniProtKB/Swiss-Prot for TBATA Gene

Publications for TBATA Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4
  3. Tbata modulates thymic stromal cell proliferation and thymus function. (PMID: 20937703) Flomerfelt F.A. … Gress R.E. (J. Exp. Med. 2010) 2 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for TBATA Gene

Sources for TBATA Gene

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