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Aliases for TATDN3 Gene

Aliases for TATDN3 Gene

  • TatD DNase Domain Containing 3 2 3 5
  • EC 3.1.21.- 4
  • EC 3.1.21 61

External Ids for TATDN3 Gene

Previous GeneCards Identifiers for TATDN3 Gene

  • GC01P209354
  • GC01P211031
  • GC01P212965
  • GC01P183641

Summaries for TATDN3 Gene

GeneCards Summary for TATDN3 Gene

TATDN3 (TatD DNase Domain Containing 3) is a Protein Coding gene. GO annotations related to this gene include deoxyribonuclease activity and endodeoxyribonuclease activity, producing 5-phosphomonoesters.

UniProtKB/Swiss-Prot for TATDN3 Gene

  • Putative deoxyribonuclease.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TATDN3 Gene

Genomics for TATDN3 Gene

Regulatory Elements for TATDN3 Gene

Enhancers for TATDN3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F212789 1.2 ENCODE 25.9 -0.2 -232 4.4 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 FLVCR1 FLVCR1-AS1 TATDN3 RPL21P28 LOC105372907 ENSG00000225233 LOC105372912 ANGEL2 ENSG00000235182 RPS28P2
GH01F212751 1.1 Ensembl ENCODE 20.7 -38.3 -38328 3.4 RELA ZNF335 ZNF316 ZNF366 CBX5 EED ETV6 CREM MAFK MTA2 FLVCR1-AS1 TATDN3 BATF3 PIR52879 NSL1
GH01F212749 1.1 Ensembl ENCODE 20.5 -41.4 -41409 2.0 YBX3 ELF3 HDGF YBX1 RAD21 RFX5 ETV6 SMARCA5 ZNF263 ZNF654 TATDN3 SNORA16B FLVCR1-AS1 BATF3 ANGEL2 FLVCR1 PIR52879 NSL1
GH01F212793 1 ENCODE 18.9 +2.7 2701 1.4 HDGF PKNOX1 ATF1 ARNT GATA2 CBX5 ZNF143 FOS KLF13 ZNF263 FLVCR1-AS1 TATDN3 FLVCR1 RPL21P28 SPATA45 RPS5P4
GH01F212727 0.9 ENCODE 20.4 -63.5 -63502 2.4 ELF3 CBX3 ARID4B ZNF48 RAD21 RARA CBX5 MIXL1 THAP11 KLF11 TATDN3 RPL21P28 FLVCR1-AS1 BATF3 SPATA45 PIR52879 NSL1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TATDN3 on UCSC Golden Path with GeneCards custom track

Promoters for TATDN3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000552559 -28 2401 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3

Genomic Location for TATDN3 Gene

Chromosome:
1
Start:
212,791,828 bp from pter
End:
212,816,825 bp from pter
Size:
24,998 bases
Orientation:
Plus strand

Genomic View for TATDN3 Gene

Genes around TATDN3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TATDN3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TATDN3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TATDN3 Gene

Proteins for TATDN3 Gene

  • Protein details for TATDN3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q17R31-TATD3_HUMAN
    Recommended name:
    Putative deoxyribonuclease TATDN3
    Protein Accession:
    Q17R31
    Secondary Accessions:
    • A6NGS3
    • B7Z1C1
    • B7Z978
    • B7ZLQ6
    • E9PJE5
    • E9PNH3
    • G3V151
    • Q4G0L1

    Protein attributes for TATDN3 Gene

    Size:
    274 amino acids
    Molecular mass:
    30333 Da
    Cofactor:
    Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240;
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH48115.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for TATDN3 Gene

    Alternative splice isoforms for TATDN3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TATDN3 Gene

Selected DME Specific Peptides for TATDN3 Gene

Q17R31:
  • AIGEVGL
  • PSVAMEGV

Post-translational modifications for TATDN3 Gene

  • Ubiquitination at Lys 123
  • Modification sites at PhosphoSitePlus

Domains & Families for TATDN3 Gene

Protein Domains for TATDN3 Gene

Suggested Antigen Peptide Sequences for TATDN3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q17R31

UniProtKB/Swiss-Prot:

TATD3_HUMAN :
  • Belongs to the TatD-type hydrolase family.
Family:
  • Belongs to the TatD-type hydrolase family.
genes like me logo Genes that share domains with TATDN3: view

No data available for Gene Families for TATDN3 Gene

Function for TATDN3 Gene

Molecular function for TATDN3 Gene

UniProtKB/Swiss-Prot Function:
Putative deoxyribonuclease.

Enzyme Numbers (IUBMB) for TATDN3 Gene

Gene Ontology (GO) - Molecular Function for TATDN3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004518 nuclease activity IEA --
GO:0016787 hydrolase activity IEA --
GO:0016788 hydrolase activity, acting on ester bonds IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with TATDN3: view
genes like me logo Genes that share phenotypes with TATDN3: view

Animal Models for TATDN3 Gene

MGI Knock Outs for TATDN3:

Animal Model Products

  • Taconic Biosciences Mouse Models for TATDN3

Flow Cytometry Products

No data available for Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for TATDN3 Gene

Localization for TATDN3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TATDN3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TATDN3 gene
Compartment Confidence
nucleus 4
cytoskeleton 3
cytosol 3
mitochondrion 2
golgi apparatus 2

Gene Ontology (GO) - Cellular Components for TATDN3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with TATDN3: view

Pathways & Interactions for TATDN3 Gene

SuperPathways for TATDN3 Gene

No Data Available

Interacting Proteins for TATDN3 Gene

Gene Ontology (GO) - Biological Process for TATDN3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0090305 nucleic acid phosphodiester bond hydrolysis IEA --
genes like me logo Genes that share ontologies with TATDN3: view

No data available for Pathways by source and SIGNOR curated interactions for TATDN3 Gene

Transcripts for TATDN3 Gene

Unigene Clusters for TATDN3 Gene

TatD DNase domain containing 3:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TATDN3 Gene

No ASD Table

Relevant External Links for TATDN3 Gene

GeneLoc Exon Structure for
TATDN3
ECgene alternative splicing isoforms for
TATDN3

Expression for TATDN3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TATDN3 Gene

Protein differential expression in normal tissues from HIPED for TATDN3 Gene

This gene is overexpressed in Heart (27.5) and Cervix (8.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TATDN3 Gene



Protein tissue co-expression partners for TATDN3 Gene

NURSA nuclear receptor signaling pathways regulating expression of TATDN3 Gene:

TATDN3

SOURCE GeneReport for Unigene cluster for TATDN3 Gene:

Hs.530538
genes like me logo Genes that share expression patterns with TATDN3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TATDN3 Gene

Orthologs for TATDN3 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TATDN3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TATDN3 34 35
  • 99.64 (n)
dog
(Canis familiaris)
Mammalia TATDN3 34 35
  • 91.12 (n)
cow
(Bos Taurus)
Mammalia TATDN3 34 35
  • 90.96 (n)
oppossum
(Monodelphis domestica)
Mammalia TATDN3 35
  • 86 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tatdn3 34
  • 85.68 (n)
mouse
(Mus musculus)
Mammalia Tatdn3 34 16 35
  • 85.19 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia TATDN3 35
  • 80 (a)
OneToOne
chicken
(Gallus gallus)
Aves TATDN3 34 35
  • 73.73 (n)
lizard
(Anolis carolinensis)
Reptilia TATDN3 35
  • 76 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tatdn3 34
  • 70.16 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC571912 34
  • 67.05 (n)
TATDN3 35
  • 67 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea B0432.8 34 35
  • 48.69 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT3G03500 34
  • 45.34 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 59 (a)
OneToOne
Species where no ortholog for TATDN3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TATDN3 Gene

ENSEMBL:
Gene Tree for TATDN3 (if available)
TreeFam:
Gene Tree for TATDN3 (if available)

Paralogs for TATDN3 Gene

No data available for Paralogs for TATDN3 Gene

Variants for TATDN3 Gene

Sequence variations from dbSNP and Humsavar for TATDN3 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1032962 -- 212,806,608(+) CTGAG(C/T)TCGCT intron-variant
rs1032963 -- 212,806,642(+) TCCCA(A/G)AGTGC intron-variant
rs1046219 -- 212,791,589(+) GAGCT(C/T)TTGCA intron-variant, upstream-variant-2KB, reference, missense
rs10494955 -- 212,798,636(+) ATTAG(C/G)TACAT intron-variant, utr-variant-5-prime
rs1054733 -- 212,816,498(+) AAAAT(C/T)GTATA utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for TATDN3 Gene

Variant ID Type Subtype PubMed ID
nsv1010003 CNV gain 25217958
esv2758997 CNV loss 17122850

Variation tolerance for TATDN3 Gene

Residual Variation Intolerance Score: 90.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.66; 45.84% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TATDN3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TATDN3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TATDN3 Gene

Disorders for TATDN3 Gene

Relevant External Links for TATDN3

Genetic Association Database (GAD)
TATDN3
Human Genome Epidemiology (HuGE) Navigator
TATDN3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TATDN3

No disorders were found for TATDN3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TATDN3 Gene

Publications for TATDN3 Gene

  1. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 46 64
  2. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64
  3. An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome. (PMID: 24275569) Bian Y. … Zou H. (J. Proteomics 2014) 4 64
  4. Initial characterization of the human central proteome. (PMID: 21269460) Burkard T.R. … Colinge J. (BMC Syst. Biol. 2011) 4 64
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for TATDN3 Gene

Sources for TATDN3 Gene

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