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Aliases & Descriptions for TARP
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CD3G 2 TARPS 5 TCRG 2 TCRGC1 2 TCRGC2 2
Descriptions T cell receptor gamma alternate reading frame protein 2 T cell receptor gamma chain 2 T-cell receptor gamma-chain constant region 2 TCR gamma alternate reading frame protein 2
Search outside databases for aliases for TARP genePrevious GC identifers: GC07U901521 GC07M038055
Summaries for TARP (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for TARP : In some non-lymphoid tissues, the unrearranged T cell receptor gamma (TRG@) locus is expressed. Theresulting transcript contains a subset of the TRG@ gene segments and is shorter than TRG@transcripts expressed in lymphoid tissues. This RefSeq record represents the unrearranged TRG@locus transcript; the complete TRG@ locus is represented by the genomic RefSeq NG_001336. Thetranscript represented by this RefSeq has two open reading frames (ORFs) that encode differentproteins. The downstream ORF is in the same frame as TRG@ and its protein product is similar toTRG@ proteins. The upstream ORF uses a different reading frame and encodes a novel protein.[provided by RefSeq] Gene Wiki entry for TARP
Genomic Location for TARP
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the TARP gene Entrez Gene cytogenetic band: 7p15-p14 TARP Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07M038265:
(about GC identifiers )
Start:
38,265,769 bp from pter
End:
38,279,773 bp from pter
Size:
14,005 bases
Orientation:
minus strand
TARP has overlapping exons with:
TRG@
1 alternative location : Chr 7-,CRA_TCAG 38,336,925-38,350,939
RefSeq DNA sequence: NC_000007.12 NT_007819.16 NT_079592.2 Proteins for TARP
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/TrEMBL: Q0VGM3 (See
protein sequence )Recommended Name: TARP protein Size : 111 amino acids; 12847 Da
REFSEQ proteins (2 alternative transcripts):
NP_001003799.1 NP_001003806.1 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells Antibodies for TARP: Assays for TARP:
Protein
Domains/ Families for TARP(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q0VGM3 ProtoNet protein and cluster: Q0VGM3
Gene Function for TARP
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001003799 Applied Biosystems Silencer ® siRNAs for TARP Sigma-Aldrich siRNA for TARP Sigma-Aldrich shRNA for TARP Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001003799                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001003799                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001003799  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001003806 Pathways & Interactions for TARP
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Drugs & Compounds for TARP (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for TARP
Transcripts for TARP(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001003799 Sigma-Aldrich siRNA for TARP Sigma-Aldrich shRNA for TARP Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001003799 NM_001003806
REFSEQ mRNAs for TARP gene (2 alternative transcripts): NM_001003799.1 NM_001003806.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001003799 NM_001003806
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001003799                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001003799                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001003799  
Additional cDNA sequence: AF085845.1 AF151103.1 AF512447.1 AF512448.1 AF512449.1 AF512450.1 AF512451.1 AF512452.1 AF512453.1 AF512454.1 AF512455.1 AF512456.1 AF512457.1 AJ583012.1 AJ583014.1 AK056843.1 AK291611.1 AK301059.1 BC017861.1 BC027954.1 BC030554.1 BC035592.1 BC039116.1 BC062761.1 BC071739.1 BC072387.1 BC072396.1 BC105589.1 CR605178.1 EU395807.1 M13231.1 M16768.1 M16804.1 M17323.1 M17324.1 M17325.1 M27331.1 M27332.1 M27333.1 M27334.1 M27335.1 M27336.1 M27337.1 M27339.1 M27340.1 M27341.1 M27342.1 M27343.1 M27344.1 M27345.1 M30894.1 M89826.1 M89828.1 M89838.1 S60175.1 S60779.1 S60780.1 S73842.1 X06774.1 X06775.1 X06776.1 X15019.1 X72500.1 X74774.1 X74775.1 Y00482.1 Y00790.1 Z11169.1 Z11170.1 Z11171.1 Z11172.1 Z11173.1 Z11174.1 Z11175.1 Z11176.1 Z11177.1 Z11178.1 Z11179.1 Z11180.1 Z11181.1 Z11182.1 Z11183.1 Z11184.1 Z11185.1 Z11186.1 Z11187.1 Z11188.1 Z11189.1 Z11190.1 Z11191.1 Z11192.1 Z11193.1 Z11194.1 Z11195.1 Z11196.1 Z11197.1 Z11198.1 Z11199.1 Z11200.1 Z11201.1 Z11202.1 Z11203.1 Z11204.1 Z11205.1 Z11206.1 Z11207.1 Z11208.1 Z11209.1 Z11210.1 Z11211.1 Z11212.1 Z11213.1 Z11214.1 Z11215.1 Z11216.1 Z11217.1 Z11218.1 Z11219.1 Z11220.1 Z11221.1 Z11222.1 Z11223.1 Z11224.1 Z11225.1 Z11226.1 Z11227.1 Z11228.1 Z11229.1 Z11230.1 Z11231.1 Z11232.1 Z11233.1 Z11234.1 Z11235.1 Z11236.1 Z11237.1 Z11238.1 Z11239.1 Z11240.1 Z11241.1 Z11242.1 Z11243.1 Z11244.1 Z11245.1 Z11246.1 Z11247.1 Z11248.1 Z11249.1 Z11250.1 Z11251.1 Z11252.1 Z11253.1 Z11254.1 Z11255.1 Z11256.1 Z11257.1 Z11258.1 Z11259.1 Z11260.1 Z11261.1 Z11262.1 Z11263.1 Z11264.1 Z11265.1 Z11266.1 Z11267.1 Z11268.1 Z11269.1 Z11270.1 Z11271.1 Z11272.1 Z11273.1 Z11274.1 Z11275.1 Z11276.1 Z11277.1 Z11278.1 Z11279.1 Z11280.1 Z11281.1 Z11282.1 Z11283.1 Z11284.1 Z11285.1 Z11286.1 Z11287.1 Z11288.1 Z11289.1 Z11290.1 Z11291.1 Z11292.1 Z11293.1 Z11294.1 Z11295.1 Z11296.1 Z11297.1 Z11298.1 Z11299.1 Z11300.1 Z11301.1 Z11302.1 Z11303.1 Z11304.1 Z11305.1 Z11306.1 Z11307.1 Z11308.1 Z11309.1 Z11310.1 Z11311.1 Z11312.1 Z11313.1 Z11314.1 Z11315.1 Z11316.1 Z11317.1 Z11318.1 Z11319.1 Z11320.1 Z11321.1 Z11322.1 Z11323.1 Z11324.1 Z11325.1 Z11326.1 Z11327.1 Z11328.1 Z11329.1 Z11330.1 Z11331.1 Z11332.1 Z11333.1 Z11334.1 Z11335.1 Z11336.1 Z11337.1 Z11338.1 Z11339.1 Z11340.1 Z11341.1 Z11342.1 Z11343.1 Z11344.1 Z11345.1 Z11346.1 Z11347.1 Z11348.1 Z11349.1 Z11350.1 Z11351.1 Z11352.1 Z11353.1 Z11354.1 Z11355.1 Z11356.1 Z11357.1 Z11358.1 Z11359.1 Z11360.1 Z11361.1 Z11362.1 Z11363.1 Z11364.1 Z11365.1 Z11366.1 Z11367.1 Z11368.1 Z11369.1 Z11370.1 Z11371.1 Z11372.1 Z11373.1 Z11374.1 Z11375.1 Z11376.1 Z11377.1 Z11378.1 Z11379.1 Z11380.1 Z11381.1 Z11382.1 Z11383.1 Z11384.1 Z11385.1 Z11386.1 Z11387.1 Z11388.1 Z11389.1 Z11390.1 Z11391.1 Z11392.1 Z11393.1 Z11394.1 Z11395.1 Z11396.1 Z11397.1 Z11398.1 Z11399.1 Z11400.1 Z11401.1 Z11402.1 Z11403.1 Z11404.1 Z11405.1 Z11406.1 Z11407.1 Z11408.1 Z11409.1 Z11410.1 Z22679.1
24/28 DOTS entries (see all 28
): DT.100777063 DT.40271042 DT.121071534 DT.100777062 DT.91910769 DT.95158208 DT.75117417 DT.95159668 DT.100692280 DT.100777067 DT.429710 DT.86846831 DT.445989 DT.92427347 DT.437577 DT.95363650 DT.121071536 DT.121071573 DT.70105015 DT.121071542 DT.70103538 DT.91985524 DT.95128321 DT.121071529
highest scoring ESTs for TARP :AA076849 AA492249 AA501934 AA513751 AA532957 AA533199 AA551316 AA570532 AF085845 AI202248
Unigene Cluster for TARP: TCR gamma alternate reading frame protein Hs.534032 [show with all ESTs ] Unigene Representative Sequence: BC030554 GeneLoc Exon Structure
Expression for TARP
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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TARP expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for TARP 1 / 2 / 3
11 probe-sets matching TARP gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.534032
Orthologs for TARP
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for TARP gene from 5 species
About this table Species with no ortholog for TARP Paralogs for TARP (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for TARP (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for TARP (up to first 250kb)
Disorders & Mutations for TARP
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 311900
Medical News for TARP (Possibly Related Articles in
Doctor's Guide )
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Publications for TARP (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/12 PubMed articles for TARP gene (see all 12
):
Search for TARP
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing TARP
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing TARP
(According to HUGE )
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Specialized Databases showing TARP (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for TARP (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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