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Aliases for TARBP2P1 Gene

Aliases for TARBP2P1 Gene

  • TARBP2P1, RISC Loading Complex RNA Binding Subunit Pseudogene 1 2 3
  • TAR (HIV-1) RNA Binding Protein 2 Pseudogene 1 2 3
  • Tar (HIV-1) RNA Binding Protein 2 Pseudogene 2
  • TAR (HIV) RNA Binding Protein 2 Pseudogene 3
  • TARBP2P 3
  • TRBP 3

External Ids for TARBP2P1 Gene

Previous HGNC Symbols for TARBP2P1 Gene

  • TARBP2P

Summaries for TARBP2P1 Gene

GeneCards Summary for TARBP2P1 Gene

TARBP2P1 (TARBP2P1, RISC Loading Complex RNA Binding Subunit Pseudogene 1) is a Pseudogene.

Additional gene information for TARBP2P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TARBP2P1 Gene

Genomics for TARBP2P1 Gene

Regulatory Elements for TARBP2P1 Gene

Enhancers for TARBP2P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H103650 0.7 Ensembl ENCODE 0.4 -8.1 -8116 1.3 ZNF692 MAX ZBTB20 LOC105375690 RIMS2 TARBP2P1 PIR62735
GH08H103652 0.7 ENCODE 0.4 -6.8 -6837 0.2 ZNF792 CEBPB FEZF1 ZEB2 CEBPG EP300 ZNF518A ZNF664 PRDM6 SCRT2 TARBP2P1 PIR62735
GH08H103676 0.4 ENCODE 0.4 +16.9 16874 0.2 POU5F1 TARBP2P1 RPS6P9
GH08H103677 0.4 ENCODE 0.4 +17.1 17084 0.2 POU5F1 LOC105375690 TARBP2P1 RPS6P9
GH08H103623 0.5 ENCODE 0.3 -35.1 -35139 0.9 POLR2A HLF POU5F1 FOXP2 LOC105375690 PIR62735 TARBP2P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TARBP2P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TARBP2P1 Gene

Genomic Locations for TARBP2P1 Gene
chr8:103,659,244-103,660,588
(GRCh38/hg38)
Size:
1,345 bases
Orientation:
Plus strand
chr8:104,671,472-104,672,816
(GRCh37/hg19)

Genomic View for TARBP2P1 Gene

Genes around TARBP2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TARBP2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TARBP2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TARBP2P1 Gene

Proteins for TARBP2P1 Gene

Post-translational modifications for TARBP2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TARBP2P1 Gene

Domains & Families for TARBP2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TARBP2P1 Gene

Function for TARBP2P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TARBP2P1 Gene

Localization for TARBP2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TARBP2P1 Gene

Pathways & Interactions for TARBP2P1 Gene

SuperPathways for TARBP2P1 Gene

No Data Available

Interacting Proteins for TARBP2P1 Gene

Gene Ontology (GO) - Biological Process for TARBP2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TARBP2P1 Gene

Drugs & Compounds for TARBP2P1 Gene

No Compound Related Data Available

Transcripts for TARBP2P1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TARBP2P1 Gene

No ASD Table

Relevant External Links for TARBP2P1 Gene

GeneLoc Exon Structure for
TARBP2P1
ECgene alternative splicing isoforms for
TARBP2P1

No data available for mRNA/cDNA for TARBP2P1 Gene

Expression for TARBP2P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of TARBP2P1 Gene:

TARBP2P1
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TARBP2P1 Gene

Orthologs for TARBP2P1 Gene

No data available for Orthologs and Evolution for TARBP2P1 Gene

Paralogs for TARBP2P1 Gene

No data available for Paralogs for TARBP2P1 Gene

Variants for TARBP2P1 Gene

Relevant External Links for TARBP2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TARBP2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TARBP2P1 Gene

Disorders for TARBP2P1 Gene

No disorders were found for TARBP2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TARBP2P1 Gene

Publications for TARBP2P1 Gene

  1. Genetic mapping in human and mouse of the locus encoding TRBP, a protein that binds the TAR region of the human immunodeficiency virus (HIV-1). (PMID: 7774957) Kozak CA … McBride OW (Genomics 1995) 3 22 60
  2. Characterization of a human TAR RNA-binding protein that activates the HIV-1 LTR. (PMID: 2011739) Gatignol A … Jeang KT (Science (New York, N.Y.) 1991) 2 3 60
  3. Effect of siRNA terminal mismatches on TRBP and Dicer binding and silencing efficacy. (PMID: 19811537) Kini HK … Walton SP (The FEBS journal 2009) 22 60
  4. Specific residues at every third position of siRNA shape its efficient RNAi activity. (PMID: 17259216) Katoh T … Suzuki T (Nucleic acids research 2007) 22 60
  5. HIV-1 TAR RNA subverts RNA interference in transfected cells through sequestration of TAR RNA-binding protein, TRBP. (PMID: 16887810) Bennasser Y … Jeang KT (The Journal of biological chemistry 2006) 22 60

Products for TARBP2P1 Gene

Sources for TARBP2P1 Gene

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