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Aliases for TAPT1-AS1 Gene

Subcategory (RNA class) for TAPT1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for TAPT1-AS1 Gene

  • TAPT1 Antisense RNA 1 (Head To Head) 2 3

External Ids for TAPT1-AS1 Gene

ORGUL Members for TAPT1-AS1 Gene

Previous GeneCards Identifiers for TAPT1-AS1 Gene

  • GC04P016231

Summaries for TAPT1-AS1 Gene

GeneCards Summary for TAPT1-AS1 Gene

TAPT1-AS1 (TAPT1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TAPT1-AS1 Gene

Genomics for TAPT1-AS1 Gene

Genomic Location for TAPT1-AS1 Gene

Start:
16,226,663 bp from pter
End:
16,320,140 bp from pter
Size:
93,478 bases
Orientation:
Plus strand

Genomic View for TAPT1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TAPT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TAPT1-AS1 Gene

No data available for Regulatory Elements for TAPT1-AS1 Gene

Proteins for TAPT1-AS1 Gene

Post-translational modifications for TAPT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TAPT1-AS1 Gene

Domains for TAPT1-AS1 Gene

Gene Families for TAPT1-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TAPT1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TAPT1-AS1 Gene

Function for TAPT1-AS1 Gene

Phenotypes for TAPT1-AS1 Gene

GenomeRNAi human phenotypes for TAPT1-AS1:
genes like me logo Genes that share phenotypes with TAPT1-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TAPT1-AS1 Gene

Localization for TAPT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TAPT1-AS1 Gene

Pathways for TAPT1-AS1 Gene

SuperPathways for TAPT1-AS1 Gene

No Data Available

Interacting Proteins for TAPT1-AS1 Gene

Gene Ontology (GO) - Biological Process for TAPT1-AS1 Gene

None

No data available for Pathways by source for TAPT1-AS1 Gene

Transcripts for TAPT1-AS1 Gene

mRNA/cDNA for TAPT1-AS1 Gene

(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TAPT1-AS1 Gene

TAPT1 antisense RNA 1 (head to head):
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TAPT1-AS1
    • Block miRNA regulation of TAPT1-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for TAPT1-AS1

    Primer Products

    • OriGene qSTAR qPCR primer pairs in human,mouse,rat for TAPT1-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for TAPT1-AS1 Gene

    No ASD Table

    Relevant External Links for TAPT1-AS1 Gene

    GeneLoc Exon Structure for
    TAPT1-AS1
    ECgene alternative splicing isoforms for
    TAPT1-AS1

    Expression for TAPT1-AS1 Gene

    mRNA expression in normal human tissues for TAPT1-AS1 Gene

    SOURCE GeneReport for Unigene cluster for TAPT1-AS1 Gene Hs.445315

    genes like me logo Genes that share expressions with TAPT1-AS1: view

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for TAPT1-AS1 Gene

    Orthologs for TAPT1-AS1 Gene

    Evolution for TAPT1-AS1 Gene

    ENSEMBL:
    Gene Tree for TAPT1-AS1 (if available)
    TreeFam:
    Gene Tree for TAPT1-AS1 (if available)

    No data available for Orthologs for TAPT1-AS1 Gene

    Paralogs for TAPT1-AS1 Gene

    No data available for Paralogs for TAPT1-AS1 Gene

    Variants for TAPT1-AS1 Gene

    Sequence variations from dbSNP and Humsavar for TAPT1-AS1 Gene

    SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
    rs2940 -- 16,256,532(-) GAGTT(C/T)GTGGA nc-transcript-variant
    rs203433 -- 16,232,164(-) TATCA(C/T)GTAAA intron-variant
    rs203434 -- 16,232,642(-) TTACA(C/T)ATAAA intron-variant
    rs203435 -- 16,234,916(+) TTTCA(A/G)CATAA intron-variant
    rs203436 -- 16,234,948(+) TTTTT(A/C)ATTTG intron-variant

    Relevant External Links for TAPT1-AS1 Gene

    HapMap Linkage Disequilibrium report
    TAPT1-AS1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TAPT1-AS1 Gene

    Disorders for TAPT1-AS1 Gene

    No disorders were found for TAPT1-AS1 Gene.

    No data available for UniProtKB/Swiss-Prot for TAPT1-AS1 Gene

    Publications for TAPT1-AS1 Gene

    1. Expressed sequence tag analysis of human RPE/choroid for the NEIBank project: over 6000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107410) Wistow G. … Peterson K. (Mol. Vis. 2002) 3
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
    4. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3
    5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

    Products for TAPT1-AS1 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate TAPT1-AS1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for TAPT1-AS1
      • Block miRNA regulation of TAPT1-AS1 using miScript Target Protectors

      Sources for TAPT1-AS1 Gene

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