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Aliases for TAPT1-AS1 Gene

Subcategory (RNA class) for TAPT1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for TAPT1-AS1 Gene

  • TAPT1 Antisense RNA 1 (Head To Head) 2 3

External Ids for TAPT1-AS1 Gene

ORGUL Members for TAPT1-AS1 Gene

Summaries for TAPT1-AS1 Gene

GeneCards Summary for TAPT1-AS1 Gene

TAPT1-AS1 (TAPT1 Antisense RNA 1 (Head To Head)) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TAPT1-AS1 Gene

Genomics for TAPT1-AS1 Gene

Genomic Location for TAPT1-AS1 Gene

Start:
16,226,663 bp from pter
End:
16,320,140 bp from pter
Size:
93,478 bases
Orientation:
Plus strand

Genomic View for TAPT1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TAPT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TAPT1-AS1 Gene

No data available for Regulatory Elements for TAPT1-AS1 Gene

Proteins for TAPT1-AS1 Gene

Post-translational modifications for TAPT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TAPT1-AS1 Gene

Domains for TAPT1-AS1 Gene

Gene Families for TAPT1-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with TAPT1-AS1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for TAPT1-AS1 Gene

Function for TAPT1-AS1 Gene

Phenotypes for TAPT1-AS1 Gene

GenomeRNAi human phenotypes for TAPT1-AS1:
genes like me logo Genes that share phenotypes with TAPT1-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TAPT1-AS1 Gene

Localization for TAPT1-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for TAPT1-AS1 Gene

Pathways for TAPT1-AS1 Gene

SuperPathways for TAPT1-AS1 Gene

No Data Available

Interacting Proteins for TAPT1-AS1 Gene

Gene Ontology (GO) - Biological Process for TAPT1-AS1 Gene

None

No data available for Pathways by source for TAPT1-AS1 Gene

Transcripts for TAPT1-AS1 Gene

mRNA/cDNA for TAPT1-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TAPT1-AS1 Gene

TAPT1 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TAPT1-AS1 Gene

No ASD Table

Relevant External Links for TAPT1-AS1 Gene

GeneLoc Exon Structure for
TAPT1-AS1
ECgene alternative splicing isoforms for
TAPT1-AS1

Expression for TAPT1-AS1 Gene

mRNA expression in normal human tissues for TAPT1-AS1 Gene

SOURCE GeneReport for Unigene cluster for TAPT1-AS1 Gene Hs.445315

genes like me logo Genes that share expressions with TAPT1-AS1: view

Orthologs for TAPT1-AS1 Gene

Evolution for TAPT1-AS1 Gene

ENSEMBL:
Gene Tree for TAPT1-AS1 (if available)
TreeFam:
Gene Tree for TAPT1-AS1 (if available)

No data available for Orthologs for TAPT1-AS1 Gene

Paralogs for TAPT1-AS1 Gene

No data available for Paralogs for TAPT1-AS1 Gene

Variants for TAPT1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TAPT1-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs2940 -- 16,256,532(-) GAGTT(C/T)GTGGA nc-transcript-variant
rs203433 -- 16,232,164(-) TATCA(C/T)GTAAA intron-variant
rs203434 -- 16,232,642(-) TTACA(C/T)ATAAA intron-variant
rs203435 -- 16,234,916(+) TTTCA(A/G)CATAA intron-variant
rs203436 -- 16,234,948(+) TTTTT(A/C)ATTTG intron-variant

Relevant External Links for TAPT1-AS1 Gene

HapMap Linkage Disequilibrium report
TAPT1-AS1

No data available for Structural Variations from Database of Genomic Variants (DGV) for TAPT1-AS1 Gene

Disorders for TAPT1-AS1 Gene

No disorders were found for TAPT1-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for TAPT1-AS1 Gene

Publications for TAPT1-AS1 Gene

  1. Expressed sequence tag analysis of human RPE/choroid for the NEIBank project: over 6000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107410) Wistow G. … Peterson K. (Mol. Vis. 2002) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for TAPT1-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TAPT1-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TAPT1-AS1
    • Block miRNA regulation of TAPT1-AS1 using miScript Target Protectors

    Sources for TAPT1-AS1 Gene

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