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Aliases for TAPT1-AS1 Gene

Subcategory (RNA class) for TAPT1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TAPT1-AS1 Gene

  • TAPT1 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for TAPT1-AS1 Gene

Previous GeneCards Identifiers for TAPT1-AS1 Gene

  • GC04P016231

Summaries for TAPT1-AS1 Gene

GeneCards Summary for TAPT1-AS1 Gene

TAPT1-AS1 (TAPT1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TAPT1-AS1 Gene

Genomics for TAPT1-AS1 Gene

Regulatory Elements for TAPT1-AS1 Gene

Enhancers for TAPT1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G016222 1.6 FANTOM5 ENCODE dbSUPER 7 -0.7 -742 6.4 PKNOX1 FOXA2 ATF1 CREB3L1 ARID4B SIN3A DMAP1 ZNF48 YY1 GLIS2 TAPT1 PROM1 TAPT1-AS1 FGFBP2 ENSG00000249234
GH04G016231 1 Ensembl dbSUPER 7.4 +5.5 5538 0.8 PKNOX1 MAFG ZNF384 FEZF1 DPF2 PRDM6 ZNF316 ATF3 NFE2L1 ZSCAN29 TAPT1-AS1 TAPT1 GC04M016256
GH04G016196 0.9 Ensembl ENCODE 8.1 -29.9 -29910 1.3 ZNF263 CTCF PKNOX1 TEAD4 CHD7 RAD21 FOXA1 IKZF1 SMC3 PRDM1 TAPT1 TAPT1-AS1 ENSG00000249234
GH04G016269 0.7 Ensembl ENCODE 8 +43.7 43732 1.6 CTCF IKZF1 GABPA TAPT1-AS1 GC04M016214 LOC100421364
GH04G016157 0.7 ENCODE 7 -67.3 -67278 3.5 SOX13 ZFP64 TAL1 CEBPG FOSL1 TCF12 GATA2 NCOR1 FOS EZH2 PROM1 TAPT1 TAPT1-AS1 GC04P016144 ENSG00000249234
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TAPT1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TAPT1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000166286 -163 3401 CREB3L1 ARID4B SIN3A DMAP1 ZNF48 YY1 GLIS2 ZNF766 ZHX2 KAT8

Genomic Location for TAPT1-AS1 Gene

Chromosome:
4
Start:
16,226,663 bp from pter
End:
16,320,140 bp from pter
Size:
93,478 bases
Orientation:
Plus strand

Genomic View for TAPT1-AS1 Gene

Genes around TAPT1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TAPT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TAPT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TAPT1-AS1 Gene

Proteins for TAPT1-AS1 Gene

Post-translational modifications for TAPT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TAPT1-AS1 Gene

Domains & Families for TAPT1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TAPT1-AS1 Gene

Function for TAPT1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TAPT1-AS1 Gene

Localization for TAPT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TAPT1-AS1 Gene

Pathways & Interactions for TAPT1-AS1 Gene

SuperPathways for TAPT1-AS1 Gene

No Data Available

Interacting Proteins for TAPT1-AS1 Gene

Gene Ontology (GO) - Biological Process for TAPT1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TAPT1-AS1 Gene

Drugs & Compounds for TAPT1-AS1 Gene

No Compound Related Data Available

Transcripts for TAPT1-AS1 Gene

mRNA/cDNA for TAPT1-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TAPT1-AS1 Gene

TAPT1 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TAPT1-AS1 Gene

No ASD Table

Relevant External Links for TAPT1-AS1 Gene

GeneLoc Exon Structure for
TAPT1-AS1
ECgene alternative splicing isoforms for
TAPT1-AS1

Expression for TAPT1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TAPT1-AS1 Gene

SOURCE GeneReport for Unigene cluster for TAPT1-AS1 Gene:

Hs.445315
genes like me logo Genes that share expression patterns with TAPT1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TAPT1-AS1 Gene

Orthologs for TAPT1-AS1 Gene

Evolution for TAPT1-AS1 Gene

ENSEMBL:
Gene Tree for TAPT1-AS1 (if available)
TreeFam:
Gene Tree for TAPT1-AS1 (if available)

No data available for Orthologs for TAPT1-AS1 Gene

Paralogs for TAPT1-AS1 Gene

No data available for Paralogs for TAPT1-AS1 Gene

Variants for TAPT1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TAPT1-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000024153 -- 16,240,864(+) AGCTC(A/C)CATAA intron-variant
rs1000057245 -- 16,235,198(+) AGAAG(A/T)CATTA intron-variant
rs1000081496 -- 16,256,531(+) GTCCA(C/G)GAACT nc-transcript-variant
rs1000191896 -- 16,244,557(+) GGAAT(A/T)GGCTG intron-variant
rs1000192338 -- 16,252,213(+) CTAAA(A/G)CAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TAPT1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv8979n54 CNV loss 21841781
dgv8980n54 CNV gain 21841781
esv24752 CNV loss 19812545
esv3893887 CNV loss 25118596
nsv1074696 CNV deletion 25765185
nsv1144075 CNV deletion 24896259
nsv527861 CNV gain 19592680
nsv593775 CNV gain+loss 21841781
nsv593778 CNV gain 21841781
nsv967728 CNV duplication 23825009

Relevant External Links for TAPT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TAPT1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TAPT1-AS1 Gene

Disorders for TAPT1-AS1 Gene

Relevant External Links for TAPT1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TAPT1-AS1

No disorders were found for TAPT1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TAPT1-AS1 Gene

Publications for TAPT1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. Expressed sequence tag analysis of human RPE/choroid for the NEIBank project: over 6000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107410) Wistow G. … Peterson K. (Mol. Vis. 2002) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TAPT1-AS1 Gene

Sources for TAPT1-AS1 Gene

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