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Aliases & Descriptions for TAPBP
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases NGS-17 3 NGS17 2 , 3 TAPA 1 , 2 , 3 TPN 2 , 3 TPSN 2 , 3 , 5 tapasin 2
Descriptions TAP binding protein (tapasin) 2 TAP-associated protein 2 , 3 TAP-binding protein 3
Search outside databases for aliases for TAPBP genePrevious GC identifers: GC06M033269 GC06M033314
Summaries for TAPBP (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for TAPBP : This gene encodes a transmembrane glycoprotein which mediates interaction between newly assembledmajor histocompatibility complex (MHC) class I molecules and the transporter associated withantigen processing (TAP), which is required for the transport of antigenic peptides across theendoplasmic reticulum membrane. This interaction is essential for optimal peptide loading on theMHC class I molecule. Up to four complexes of MHC class I and this protein may be bound to asingle TAP molecule. This protein contains a C-terminal double-lysine motif (KKKAE) known tomaintain membrane proteins in the endoplasmic reticulum. This gene lies within the majorhistocompatibility complex on chromosome 6. Alternative splicing results in three transcriptvariants encoding different isoforms. [provided by RefSeq] UniProtKB/Swiss-Prot: TPSN_HUMAN, O15533 Function : Involved in the association of MHC class I with transporter associated with antigenprocessing (TAP) and in the assembly of MHC class I with peptide (peptide loading)
Gene Wiki entry for TAPBP (Tapasin)
Genomic Location for TAPBP
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the TAPBP gene Entrez Gene cytogenetic band: 6p21.3 HGNC cytogenetic band: 6p21.3 TAPBP Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure
GeneLoc location for GC06M033375:
(about GC identifiers )
Start:
33,375,449 bp from pter
End:
33,389,967 bp from pter
Size:
14,519 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000006.10 NT_007592.14 NT_113891.1 NT_113897.1 Proteins for TAPBP
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: TPSN_HUMAN, O15533 (See
protein sequence )Recommended Name: Tapasin precursor Size : 448 amino acids; 47626 Da
Subunit : Interacts with TAP1 and is thus a subunit of the TAP complex. Interaction with TAP1 isTAP2 independent and is required for efficient peptide-TAP interaction. Obligatory mediator forthe interaction between newly assembled MHC class I molecules, clareticulin, ERp57 and TAP. Up to4 MHC class I/tapasin complexes bind to 1 TAP
Subcellular location : Endoplasmic reticulum membrane; Single-pass type I membrane protein(Probable). Microsome membrane; Single-pass membrane protein (Probable)
Sequence caution : Sequence=AAD32924.2; Type=Frameshift; Positions=Several;
PDB structures from and Proteopedia : 3F8U (3D)
 
Secondary accessions : A2AB91 A2ABC0 B0V0A6 O15210 O15272 Q5STJ8 Q5STK6 Q5STQ5 Q5STQ6 Q66K65 Q96KK7Q9HAN8 Q9UEE0 Q9UEE4 Q9UIZ6 Q9Y6K2 Alternative splicing : 3 isoforms : O15533-1 O15533-2 O15533-3
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_003181.3 NP_757345.1 NP_757346.1 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/7 Gene Ontology (GO) cellular component terms (links to tree view) (see all 7
):
About this table Antibodies for TAPBP: Assays for TAPBP:
Protein
Domains/ Families for TAPBP(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry O15533 ProtoNet protein and cluster: O15533
2 Blocks protein families : IPB003597 Immunoglobulin C-type IPB008056 Tapasin signature UniProtKB/Swiss-Prot: TPSN_HUMAN, O15533 Domain : The N-terminus is required for efficient association with MHC class I molecule and for astable interaction between MHC I and calreticulin. Binding to TAP is mediated by the C-terminusregion Similarity : Contains 1 Ig-like C1-type (immunoglobulin-like) domain
Gene Function for TAPBP
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_003190 Applied Biosystems Silencer ® siRNAs for TAPBP Sigma-Aldrich siRNA and siRNA Panels for TAPBP Sigma-Aldrich shRNA for TAPBP Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_003190                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_003190                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_003190  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003190 UniProtKB/Swiss-Prot: TPSN_HUMAN, O15533 Function : Involved in the association of MHC class I with transporter associated with antigenprocessing (TAP) and in the assembly of MHC class I with peptide (peptide loading)
Genatlas biochemistry entry for TAPBP :tapasin,truncated actin P binding protein,21kDa,widely expressed,involved in the assembly andfunction of multimeric MHC class J-TAP complexes,transporter associated with antigen processing
2 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Tapbp) :5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
):
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Pathways & Interactions for TAPBP
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for TAPBP (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for TAPBP 3 Interacting proteins for TAPBP (O15533 1 , 2 ) via UniProtKB, MINT, and/or STRING About this table 5 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for TAPBP (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for TAPBP 2 Novoseek chemical compound relationships for TAPBP gene
About this table
Transcripts for TAPBP(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_003190 Sigma-Aldrich siRNA and siRNA Panels for TAPBP Sigma-Aldrich shRNA for TAPBP Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003190 NM_172208 NM_172209
REFSEQ mRNAs for TAPBP gene (3 alternative transcripts): NM_003190.3 NM_172208.1 NM_172209.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003190 NM_172208 NM_172209
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_003190                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_003190                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_003190  
Additional cDNA sequence: AB010639.1 AF009510.1 AF029750.1 AF067286.3 AF314222.1 AY007154.1 BC064966.1 BC080574.1 CR591254.1 CR591308.1 CR600344.1 CR614167.1 CR618722.1 EU693375.1 Y13582.1
22 DOTS entries : DT.91843367 DT.100687058 DT.100687064 DT.449485 DT.95319488 DT.100775691 DT.97821824 DT.97862163 DT.92403120 DT.95128721 DT.121364773 DT.80100178 DT.97862158 DT.91694893 DT.100045302 DT.100763210 DT.121364801 DT.92468618 DT.95105196 DT.97863628 DT.100733389 DT.102833958
24/461 AceView cDNA sequences (see all 461
):AI936180 BQ100943 CD366980 AB010639 CR600344 AA595010 BU194614 CR614167 BQ028977 AU131037 BM806505 NM_172209 AF009510 AI623791 BU679276 BQ028976 BF914956 BM747118 BF982266 BQ648536 AY007154 CR591254 AI475624 CR591308
highest scoring ESTs for TAPBP :AF029750 AB010639 AF009510 AF067286 AF314222 AI989458 AJ714633 AU117273 BE208288 BF792885
Unigene Cluster for TAPBP: TAP binding protein (tapasin) Hs.714746 [show with all ESTs ] Unigene Representative Sequence: NM_003190 GeneLoc Exon Structure
Expression for TAPBP
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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TAPBP expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for TAPBP 1 / 2 / 3
7 probe-sets matching TAPBP gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GGCTCCTCGASOURCE GeneReport for Unigene cluster: Hs.714746 Expression variation in blood from EXPOLDB for TAPBP
UniProtKB/Swiss-Prot: TPSN_HUMAN, O15533 Tissue specificity : Neutrophils, mostly in fully differentiated cells
Orthologs for TAPBP
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for TAPBP gene from 5/7 species (see all 7
)
About this table Species with no ortholog for TAPBP Paralogs for TAPBP (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for TAPBP (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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UniProtKB/Swiss-Prot: TPSN_HUMAN, O15533 Polymorphism : The 2 alleles of TAPBP; TAPBP*01 (Tapasin*01) (shown here) and TAPBP*02 (Tapasin*02);are in linkage disequilibria with the HLA-DRB1 locus in a Japanese population
HapMap Linkage Disequilibrium images for TAPBP (up to first 250kb)
Disorders & Mutations for TAPBP
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 601962 disorders : 604571
10/14 Novoseek disease relationships for TAPBP gene (see all 14
)
About this table Human Gene Mutation Database : TAPBP Genetic Association Database: TAPBP Human Genome Epidemiology Navigator: TAPBP (6 documents)
Medical News for TAPBP (Possibly Related Articles in
Doctor's Guide )
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Publications for TAPBP (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/197 PubMed articles for TAPBP gene (see all 197
): Cloning and functional characterization of a subunit of the transporter associated with antigen processing. (PubMed id 9238042) 1, 2, 3, 4 Li S.... Wang P. (1997) Identification of novel Tapasin polymorphisms and linkage disequilibrium to MHC class I alleles. (PubMed id 11132161) 1, 3, 6 Williams A.P....Elliott T. (2000) Tapasin is required for efficient peptide binding to transporter associated with antigen processing. (PubMed id 10636848) 1, 3, 4 Li S.... Wang P. (2000) The N-terminal region of tapasin is required to stabilize the MHC class I loading complex. (PubMed id 10382748) 1, 3, 4 Bangia N.... Cresswell P. (1999) Generation of a functional, soluble tapasin protein from an alternatively spliced mRNA. (PubMed id 14668790) 1, 3, 4 Gao B.... Elliott T. (2004) Granulocyte-macrophage colony-stimulating factor modulates tapasin expression in human neutrophils. (PubMed id 10088603) 1, 3, 4 El Ouakfaoui S.... Beaulieu A.D. (1999) A critical role for tapasin in the assembly and function of multimeric MHC class I-TAP complexes. (PubMed id 9271576) 1, 3, 4 Ortmann B....Cresswell P. (1997) Polymorphism of TAPASIN and its linkage disequilibria with HLA class II genes in the Japanese population. (PubMed id 9802609) 1, 3, 4 Furukawa H.... Juji T. (1998) Tapasin gene polymorphism in systemic onset juvenile rheumatoid arthritis: a family-based case-control study. (PubMed id 15743475) 1, 3, 6 Bukulmez H....Colbert R.A. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004)
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Genome Databases showing TAPBP
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing TAPBP
(According to HUGE )
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Specialized Databases showing TAPBP (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for TAPBP (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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