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TAL2 Gene

protein-coding GIFtS: 54

GC09P107464

T-cell acute lymphocytic leukemia 2
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
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Aliases
TAL-2 ^³
bHLHa19 ^¹

Descriptions
T-cell acute lymphocytic leukemia 2 ^²

External Ids
HGNC: 11557¹
Entrez Gene: 6887²
UniProtKB: Q16559³
Ensembl: ENSG00000186051⁷

Search outside databases for aliases for TAL2 gene

Previous GC identifers: GC09P099225 GC09P100168 GC09P101882 GC09P103804 GC09P105504

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for TAL2:

This intronless gene encodes a helix-loop-helix protein. Translocations between this gene on

chromosome 9 and the T-cell receptor beta-chain locus on chromosome 7 have been associated with

activation of the T-cell acute lymphocytic leukemia 2 gene and T-cell acute lymphoblastic

leukemia. [provided by RefSeq]

Gene Wiki entry for TAL2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the TAL2 gene

Entrez Gene cytogenetic band: 9q32 Ensembl cytogenetic band: 9q31.2 HGNC cytogenetic band: 9q32

TAL2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure

GeneLoc location for GC09P107464: (about GC identifiers)

Start:	107,464,559 bp from pter
End:	107,464,947 bp from pter
Size:	389 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000009.10 NT_008470.18

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: TAL2_HUMAN, Q16559 (See protein sequence)

Recommended Name: T-cell acute lymphocytic leukemia protein 2

Size: 108 amino acids; 12291 Da

Secondary accessions: A0AVI7

REFSEQ proteins: NP_005412.1

ENSEMBL proteins:

ENSP00000334547

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
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	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (TAL2)
	Browse Abnova for Human Recombinant Proteins

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

1 Gene Ontology (GO) cellular component term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	IEA	--

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Antibodies for TAL2:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for TAL2
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	Antibodies from Abcam (TAL2), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (TAL2)
	Novus Biologicals Antibody for TAL2

Assays for TAL2:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry Q16559

ProtoNet protein and cluster: Q16559

1 Blocks protein family: IPB001092 Basic helix-loop-helix dimerization domain bHLH

UniProtKB/Swiss-Prot: TAL2_HUMAN, Q16559

Similarity: Contains 1 basic helix-loop-helix (bHLH) domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (TAL2)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (TAL2)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005421

Applied Biosystems Silencer® siRNAs for TAL2

Sigma-Aldrich siRNA for TAL2

Sigma-Aldrich shRNA for TAL2

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Browse Clone Ranger at Invitrogen for clones
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_005421
Myc/DDK tagged cDNA clone in CMV expression vector: NM_005421
untagged cDNA clone in CMV expression vector: NM_005421

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_005421

Genatlas biochemistry entry for TAL2:

helix loop helix protein,homologous to TAL1,involved in T cell acute lymphoblastic leukemia,with

translocation t(7;9)(q35;q34)

6 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Tal2):

behavior/neurological	growth/size	hematopoietic system	homeostasis/metabolism	lethality-postnatal
nervous system

3 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003677	DNA binding	TAS	1763056
GO:0005515	protein binding	TAS	1763056
GO:0030528	transcription regulator activity	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Gene Network Central^TM Interacting Genes and Proteins Network for TAL2

5/7 Interacting proteins for TAL2 (ENSP00000334547³) via UniProtKB, MINT, and/or STRING (see all 7 )

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
TCF3	ENSP00000262965³	STRING (score=.98)
LMO1	ENSP00000338207³	STRING (score=.961)
LMO2	ENSP00000257818³	STRING (score=.954)
TLX3	ENSP00000296921³	STRING (score=.8)
TCF4	ENSP00000346440³	STRING (score=.767)

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5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6 ):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006355	regulation of transcription, DNA-dependent	IEA	--
GO:0007610	behavior	IEA	--
GO:0009791	post-embryonic development	IEA	--
GO:0021794	thalamus development	IEA	--
GO:0030901	midbrain development	IEA	--

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for TAL2

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (TAL2)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (TAL2)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005421

Sigma-Aldrich siRNA for TAL2

Sigma-Aldrich shRNA for TAL2

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_005421

REFSEQ mRNAs for TAL2 gene:

NM_005421.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_005421

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005421
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_005421
                                 untagged cDNA clone in CMV expression vector: NM_005421

Additional cDNA sequence:

BC069422.1 BC126373.1 BC126375.1

1 DOTS entry:

DT.425314

4 AceView cDNA sequences:

BC069422 NM_005421 AA767775 AA904907

highest scoring ESTs for TAL2:

AA767775 AA904907 BC069422 NM_005421 BC126373 BC126375

Unigene Cluster for TAL2:

T-cell acute lymphocytic leukemia 2

Hs.247978 [show with all ESTs]

Unigene Representative Sequence: NM_005421

GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:

ENST00000334077

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

TAL2 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for TAL2

¹ / ² / ³

3 probe-sets matching TAL2 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
231759_at²^{, 3}	U133-B	1	1.00	1.00	--	--	NM_005421	0.60	1.00	0.82	1
1553593_a_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--
231759_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: AGGAATGTCA

SOURCE GeneReport for Unigene cluster: Hs.247978

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for TAL2 gene from 5/6 species (see all 6 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
chimpanzee (Pan troglodytes)	TAL2¹	--	T-cell acute lymphocytic leukemia 2	100(n) 100(a)	473010 XM_528380.2 XP_528380.2
cow (Bos taurus)	TAL2¹	--	T-cell acute lymphocytic leukemia 2	90.16(n) 95.24(a)	524755 XM_603087.3 XP_603087.3
rat (Rattus norvegicus)	Tal2¹	--	T-cell acute lymphocytic leukemia 2	85.19(n) 85.19(a)	685229 XM_001062903.1 XP_001062903.1
mouse (Mus musculus)	Tal2^{1, 5}	4 (24.70 cM)⁵	T-cell acute lymphocytic leukemia 2^{1, 5}	86.11(n)¹ 86.11(a)¹	21350¹ NM_009317.3¹ NP_033343.1¹ AK018448⁵ AL844585⁵ (see all 7)
chicken (Gallus gallus)	TAL2¹	--	T-cell acute lymphocytic leukemia 2	76.01(n) 76.64(a)	427304 XM_424886.2 XP_424886.1

About this table Species with no ortholog for TAL2

ENSEMBL Gene Tree for TAL2

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for TAL2 gene

NHLH1² TAL1² NHLH2² LYL1²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/26 NCBI SNPs in TAL2 are shown (see all 26 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 36)

AB	SNP ID	Valid	Chr 9 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs10816292^1,2	A,C,F,H	107463187(+)	`GAAAGG/TGTAGA`	1	--	ng5¹ tfbs³		4		EU EA WA	418
	rs10978182^1,2	A,C,F,H	107463488(+)	`GCCCCA/GAAGAG`	1	--	ng5¹		8		EU EA WA NA	632
--	rs7027450^1,2	A,C	107465203(+)	`TCTAAA/GTAAAA`	1	--	ng3¹		0	--	--	--	--
--	rs7851062^1,2	A,C	107464113(+)	`actccA/Gtctca`	1	--	ng5¹		0	--	--	--	--
	rs12338387^1,2	F,H	107463308(+)	`GCCTGG/AGGCTA`	1	--	ng5¹		4		EU EA WA	394
--	rs7041949^1,2	A,C	107463018(+)	`ttggaA/Gcctgt`	1	--	ng5¹		0	--	--	--	--
	rs10816291^1,2	A	107462753(+)	`cccccA/Gacttg`	1	--	ng5¹		0	--	--	--	--
--	rs7041188^1,2	A	107462738(+)	`ctgccA/Gccccc`	1	--	ng5¹ tfbs³		0	--	--	--	--
--	rs652574^1,2	A	107462647(+)	`ccaccA/Gcgccc`	1	--	ng5¹		0	--	--	--	--
--	rs35073359^1,2	--	107465377(+)	`AATCTG/TAAGAT`	1	--	ng3¹		0	--	--	--	--

About this table

HapMap Linkage Disequilibrium images for TAL2 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 186855

UniProtKB/Swiss-Prot: TAL2_HUMAN, Q16559

A chromosomal aberration involving TAL2 may be a cause of some T-cell acute lymphoblastic

leukemia (T-ALL). Translocation t(7;9)(q34;q32) with TCRB

Genatlas disease: TAL2

acute lymphoblastic leukemia (T cell) with breakpoint in t(7;9)(q35;q34) translocation

Tumor Gene Database: TAL2

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10 PubMed articles for TAL2 gene:

TAL2, a helix-loop-helix gene activated by the (7;9)(q34;q32) translocation in human T-cell leukemia. (PubMed id 1763056)^{1, 2, 3, 4} Xia Y.... Baer R.J. (1991)
Products of the TAL2 oncogene in leukemic T cells: bHLH phosphoproteins with DNA-binding activity. (PubMed id 8152805)^{1, 3, 4} Xia Y.... Baer R. (1994)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)^{3, 4} Humphray S.J.... Dunham I. (2004)
Distinct t(7;9)(q34;q32) breakpoints in healthy individuals and individuals with T-ALL. (PubMed id 12567187)³ Marculescu R....Nadel B. (2003)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Differential interactions of Id proteins with basic-helix-loop-helix transcription factors. (PubMed id 9242638)³ Langlands K....Prochownik E.V. (1997)
Specific in vivo association between the bHLH and LIM proteins implicated in human T cell leukemia. (PubMed id 7957052)³ Wadman I....Baer R. (1994)
T-cell acute lymphoblastic leukemia--the associated gene SCL/tal codes for a 42-Kd nuclear phosphoprotein. (PubMed id 1450410)³ Goldfarb A.N....Greenberg J.M. (1992)
TAL1, TAL2 and LYL1: a family of basic helix-loop-helix proteins implicated in T cell acute leukaemia. (PubMed id 8142619)¹ Baer R. (1993)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 6887	HGNC: 11557	AceView: TAL2	Ensembl:ENSG00000186051	euGenes: HUgn6887
ECgene: TAL2	H-InvDB: TAL2

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
ATLAS Chromosomes in Cancer entry for TAL2	Genetics and Cytogenetics in Oncology and Haematology

Licensable Technologies for TAL2
(Available from WIS Yeda, Salk, Tufts)

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(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for TAL2:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for TAL2-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for TAL2		Antibodies for TAL2
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for TAL2		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

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	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
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	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

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TAL2 Gene

protein-coding GIFtS: 54

Aliases &
Descriptions
for TAL2

Summaries
for TAL2

Genomic Location
for TAL2

Proteins
for TAL2

Protein Domains/
Families
for TAL2

Gene Function
for TAL2

Pathways & Interactions
for TAL2

Drugs & Compounds
for TAL2

Transcripts
for TAL2

Expression
for TAL2

Orthologs
for TAL2

Paralogs
for TAL2

SNPs/Variants
for TAL2

Disorders & Mutations
for TAL2

Medical News
for TAL2

Publications
for TAL2

Search for TAL2

Genome Databases showing TAL2

Other Databases showing TAL2

Specialized Databases showing TAL2

Licensable Technologies
for TAL2

Services
for TAL2

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

TAL2 Gene

protein-coding GIFtS: 54

Aliases & Descriptionsfor TAL2

Summariesfor TAL2

Genomic Locationfor TAL2

Proteinsfor TAL2

Protein Domains/Familiesfor TAL2

Gene Functionfor TAL2

Pathways & Interactionsfor TAL2

Drugs & Compoundsfor TAL2

Transcriptsfor TAL2

Expression for TAL2

Orthologsfor TAL2

Paralogsfor TAL2

SNPs/Variantsfor TAL2

Disorders & Mutationsfor TAL2

Medical Newsfor TAL2

Publicationsfor TAL2

Search for TAL2

Genome Databases showing TAL2

Other Databases showing TAL2

Specialized Databases showing TAL2

Licensable Technologiesfor TAL2

Servicesfor TAL2

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for TAL2

Summaries
for TAL2

Genomic Location
for TAL2

Proteins
for TAL2

Protein Domains/
Families
for TAL2

Gene Function
for TAL2

Pathways & Interactions
for TAL2

Drugs & Compounds
for TAL2

Transcripts
for TAL2

Expression
for TAL2

Orthologs
for TAL2

Paralogs
for TAL2

SNPs/Variants
for TAL2

Disorders & Mutations
for TAL2

Medical News
for TAL2

Publications
for TAL2

Licensable Technologies
for TAL2

Services
for TAL2