Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TAGLN3 Gene

Aliases for TAGLN3 Gene

  • Transgelin 3 2 3 5
  • Neuronal Protein NP25 3 4
  • Neuronal Protein 22 3 4
  • NP22 3 4
  • NP25 3 4
  • Transgelin-3 3
  • NP24 3

External Ids for TAGLN3 Gene

Previous GeneCards Identifiers for TAGLN3 Gene

  • GC03P113201
  • GC03P111717
  • GC03P109092

Summaries for TAGLN3 Gene

GeneCards Summary for TAGLN3 Gene

TAGLN3 (Transgelin 3) is a Protein Coding gene. GO annotations related to this gene include actin filament binding. An important paralog of this gene is TAGLN2.

Gene Wiki entry for TAGLN3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TAGLN3 Gene

Genomics for TAGLN3 Gene

Regulatory Elements for TAGLN3 Gene

Enhancers for TAGLN3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G111858 1.7 FANTOM5 ENCODE dbSUPER 10.2 -136.1 -136055 8.6 PKNOX1 FOXA2 SIN3A FEZF1 ZNF2 YY1 FOS SP3 SP5 TBX21 ABHD10 PLCXD2 TAGLN3 PLCXD2-AS1 PHLDB2 SLC9C1 LOC105374040 GC03P111896
GH03G112004 0.6 FANTOM5 2.5 +6.1 6141 0.1 NR2F1 JUND EGR1 SMARCA4 NR2C1 NR2F6 FOS HNF4A ABHD10 TAGLN3 SLC9C1 RFKP2
GH03G111998 0.8 ENCODE 0.7 +0.7 738 2.1 CTCF MXI1 PKNOX1 SIN3A RBBP5 EBF1 RAD21 POLR2A ZNF143 ZNF207 ABHD10 TAGLN3 RFKP2
GH03G111978 1.3 ENCODE dbSUPER 0.4 -19.4 -19387 2.4 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207 MXD4 PLCXD2 ABHD10 PLCXD2-AS1 TAGLN3
GH03G112002 0.7 ENCODE 0.7 +4.0 3991 1.2 BHLHE40 HLF MAX RAD21 YY1 FOXA1 NR2F2 GABPA ZFHX2 JUND ABHD10 CD96 TAGLN3 RFKP2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TAGLN3 on UCSC Golden Path with GeneCards custom track

Promoters for TAGLN3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000156508 536 801 CTCF MXI1 PKNOX1 SIN3A RBBP5 RAD21 POLR2A ZNF143 ZNF207 SMC3

Genomic Location for TAGLN3 Gene

Chromosome:
3
Start:
111,998,664 bp from pter
End:
112,013,888 bp from pter
Size:
15,225 bases
Orientation:
Plus strand

Genomic View for TAGLN3 Gene

Genes around TAGLN3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TAGLN3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TAGLN3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TAGLN3 Gene

Proteins for TAGLN3 Gene

  • Protein details for TAGLN3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UI15-TAGL3_HUMAN
    Recommended name:
    Transgelin-3
    Protein Accession:
    Q9UI15
    Secondary Accessions:
    • D3DN64
    • Q96A74

    Protein attributes for TAGLN3 Gene

    Size:
    199 amino acids
    Molecular mass:
    22473 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAF17189.1; Type=Frameshift; Positions=199; Evidence={ECO:0000305};

neXtProt entry for TAGLN3 Gene

Post-translational modifications for TAGLN3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

  • Abcam antibodies for TAGLN3

No data available for DME Specific Peptides for TAGLN3 Gene

Domains & Families for TAGLN3 Gene

Suggested Antigen Peptide Sequences for TAGLN3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9UI15

UniProtKB/Swiss-Prot:

TAGL3_HUMAN :
  • Belongs to the calponin family.
Family:
  • Belongs to the calponin family.
genes like me logo Genes that share domains with TAGLN3: view

No data available for Gene Families for TAGLN3 Gene

Function for TAGLN3 Gene

Gene Ontology (GO) - Molecular Function for TAGLN3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0051015 actin filament binding IEA --
genes like me logo Genes that share ontologies with TAGLN3: view
genes like me logo Genes that share phenotypes with TAGLN3: view

Animal Model Products

CRISPR Products

miRNA for TAGLN3 Gene

miRTarBase miRNAs that target TAGLN3

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TAGLN3 Gene

Localization for TAGLN3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TAGLN3 gene
Compartment Confidence
nucleus 4
cytosol 3
cytoskeleton 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for TAGLN3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0043209 myelin sheath IEA --
genes like me logo Genes that share ontologies with TAGLN3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for TAGLN3 Gene

Pathways & Interactions for TAGLN3 Gene

SuperPathways for TAGLN3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TAGLN3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IEA --
GO:0007417 central nervous system development TAS 8015377
genes like me logo Genes that share ontologies with TAGLN3: view

No data available for Pathways by source and SIGNOR curated interactions for TAGLN3 Gene

Drugs & Compounds for TAGLN3 Gene

No Compound Related Data Available

Transcripts for TAGLN3 Gene

Unigene Clusters for TAGLN3 Gene

Transgelin 3:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for TAGLN3 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c · 2d ^ 3 ^ 4 ^ 5a · 5b
SP1: - -
SP2: - - -
SP3: -
SP4:

Relevant External Links for TAGLN3 Gene

GeneLoc Exon Structure for
TAGLN3
ECgene alternative splicing isoforms for
TAGLN3

Expression for TAGLN3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TAGLN3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TAGLN3 Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x6.8), Brain - Frontal Cortex (BA9) (x6.6), Brain - Cortex (x6.0), and Brain - Amygdala (x4.7).

Protein differential expression in normal tissues from HIPED for TAGLN3 Gene

This gene is overexpressed in Frontal cortex (20.0), Brain (15.3), and Fetal Brain (8.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TAGLN3 Gene



Protein tissue co-expression partners for TAGLN3 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TAGLN3 Gene:

TAGLN3

SOURCE GeneReport for Unigene cluster for TAGLN3 Gene:

Hs.169330

mRNA Expression by UniProt/SwissProt for TAGLN3 Gene:

Q9UI15-TAGL3_HUMAN
Tissue specificity: Widely expressed in the brain. Expression is increased in the superior frontal cortex of alcoholics, but not in the motor cortex or cerebellum.

Evidence on tissue expression from TISSUES for TAGLN3 Gene

  • Nervous system(4.9)
genes like me logo Genes that share expression patterns with TAGLN3: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for TAGLN3 Gene

Orthologs for TAGLN3 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for TAGLN3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TAGLN3 34 35
  • 99.5 (n)
cow
(Bos Taurus)
Mammalia TAGLN3 34 35
  • 94.3 (n)
mouse
(Mus musculus)
Mammalia Tagln3 34 16 35
  • 93.63 (n)
rat
(Rattus norvegicus)
Mammalia Tagln3 34
  • 92.96 (n)
dog
(Canis familiaris)
Mammalia TAGLN3 34 35
  • 92.8 (n)
oppossum
(Monodelphis domestica)
Mammalia TAGLN3 35
  • 92 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TAGLN3 35
  • 88 (a)
OneToOne
chicken
(Gallus gallus)
Aves TAGLN3 34 35
  • 80.74 (n)
lizard
(Anolis carolinensis)
Reptilia TAGLN3 35
  • 87 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii tagln3b 34 35
  • 71.52 (n)
tagln3a 35
  • 71 (a)
OneToMany
wufc80d07 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000748 34
  • 54.07 (n)
fruit fly
(Drosophila melanogaster)
Insecta Chd64 35
  • 44 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea cpn-2 34 35
  • 46.05 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SCP1 35
  • 28 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 42 (a)
ManyToMany
CSA.10356 35
  • 42 (a)
ManyToMany
Species where no ortholog for TAGLN3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for TAGLN3 Gene

ENSEMBL:
Gene Tree for TAGLN3 (if available)
TreeFam:
Gene Tree for TAGLN3 (if available)

Paralogs for TAGLN3 Gene

Paralogs for TAGLN3 Gene

(5) SIMAP similar genes for TAGLN3 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with TAGLN3: view

Variants for TAGLN3 Gene

Sequence variations from dbSNP and Humsavar for TAGLN3 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000053639 -- 112,003,400(+) TGCAG(A/G)GCAGA intron-variant
rs1000691106 -- 112,006,047(+) AGCCA(A/C)CGCGC intron-variant
rs1000708177 -- 112,014,304(+) TGGGT(A/G)GATGA downstream-variant-500B
rs1000806594 -- 112,006,309(+) TGGTC(G/T)GGGAA intron-variant
rs1000855173 -- 112,006,780(+) CATAC(A/G)TAAGA intron-variant

Variation tolerance for TAGLN3 Gene

Residual Variation Intolerance Score: 27.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.09; 2.14% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TAGLN3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TAGLN3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TAGLN3 Gene

Disorders for TAGLN3 Gene

Relevant External Links for TAGLN3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TAGLN3

No disorders were found for TAGLN3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TAGLN3 Gene

Publications for TAGLN3 Gene

  1. Molecular cloning and characterization of hNP22: a gene up-regulated in human alcoholic brain. (PMID: 11238712) Fan L. … Wilce P.A. (J. Neurochem. 2001) 2 3 4 22 64
  2. The identification of NP25: a novel protein that is differentially expressed by neuronal subpopulations. (PMID: 8015377) Ren W.Z. … Liew C.C. (Brain Res. Mol. Brain Res. 1994) 2 3 22 64
  3. Expression of human neuronal protein 22, a novel cytoskeleton-associated protein, was decreased in the anterior cingulate cortex of schizophrenia. (PMID: 15781144) Ito M. … Matsumoto I. (Neurosci. Lett. 2005) 3 22 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PMID: 10931946) Hu R.-M. … Chen J.-L. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 4 64

Products for TAGLN3 Gene

Sources for TAGLN3 Gene

Content
Loading form....