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Aliases & Descriptions for TAGLN
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DKFZp686B01212 2 DKFZp686P11128 1 , 2 SM22 1 , 2 , 3 , 5 SM22-alpha 2 , 3 SMCC 1 , 2 , 5 TAGLN1 1 , 2 WS3-10 1 , 2 , 3 transgelin 2
Descriptions 22 kDa actin-binding protein 3 Smooth muscle protein 22-alpha 3 transgelin variant 2 2
Search outside databases for aliases for TAGLN genePrevious GC identifers: GC11P119422 GC11P118581 GC11P117103 GC11P116607
Summaries for TAGLN (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for TAGLN : The protein encoded by this gene is a transformation and shape-change sensitive actincross-linking/gelling protein found in fibroblasts and smooth muscle. Its expression isdown-regulated in many cell lines, and this down-regulation may be an early and sensitive markerfor the onset of transformation. A functional role of this protein is unclear. Two transcriptvariants encoding the same protein have been found for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: TAGL_HUMAN, Q01995 Function : Actin cross-linking/gelling protein (By similarity). Involved in calcium interactions andcontractile properties of the cell that may contribute to replicative senescence
Gene Wiki entry for TAGLN
Genomic Location for TAGLN
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
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Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the TAGLN gene Entrez Gene cytogenetic band: 11q23.2 Ensembl cytogenetic band: 11q23.3 HGNC cytogenetic band: 11q23.2 TAGLN Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11P116575:
(about GC identifiers )
Start:
116,575,250 bp from pter
End:
116,580,718 bp from pter
Size:
5,469 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000011.8 NT_033899.7 Proteins for TAGLN
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: TAGL_HUMAN, Q01995 (See
protein sequence )Recommended Name: Transgelin Size : 201 amino acids; 22611 Da
Subcellular location : Cytoplasm (Probable)
Secondary accessions : O15542
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001001522.1 NP_003177.2 ENSEMBL proteins: ENSP00000364427 ENSP00000278968 ENSP00000376678 Human Recombinant Proteins                OriGene Purified Recombinant Human Proteins (see all 2 ): TAGLN 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005737 cytoplasm
IEA --
About this table Antibodies for TAGLN: Assays for TAGLN:
Protein
Domains/ Families for TAGLN(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q01995 ProtoNet protein and cluster: Q01995
3 Blocks protein families : IPB001061 Smooth muscle protein 22-alpha (transgelin) signature IPB001715 Calponin-like actin-binding IPB003247 Calponin-like actin-binding subtype UniProtKB/Swiss-Prot: TAGL_HUMAN, Q01995 Similarity : Belongs to the calponin familySimilarity : Contains 1 calponin-like repeatSimilarity : Contains 1 CH (calponin-homology) domain
Gene Function for TAGLN
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Clones , and
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003186 Applied Biosystems Silencer ® siRNAs for TAGLN Sigma-Aldrich siRNA for TAGLN Sigma-Aldrich shRNA for TAGLN Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001001522                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001001522                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001001522  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003186 UniProtKB/Swiss-Prot: TAGL_HUMAN, Q01995 Function : Actin cross-linking/gelling protein (By similarity). Involved in calcium interactions andcontractile properties of the cell that may contribute to replicative senescence Induction : Overexpressed in senescent human fibroblasts
Genatlas biochemistry entry for TAGLN :transgelin,22kDa,cytoplasmic,one of the earliest markers of differentiated smooth muscle cells andadult tissues,murine Sm22 alpha homolog,highly expressed in senescent fibroblasts and infibroblasts from patients with Werner syndrome
11 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Tagln) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for TAGLN
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for TAGLN 5/19 Interacting proteins for TAGLN (ENSP00000278968 3 Q01995 1 ) via UniProtKB, MINT, and/or STRING (see all 19
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
About this table
Drugs & Compounds for TAGLN (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for TAGLN 7 Novoseek chemical compound relationships for TAGLN gene
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Transcripts for TAGLN(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003186 Sigma-Aldrich siRNA for TAGLN Sigma-Aldrich shRNA for TAGLN Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001001522 NM_003186
REFSEQ mRNAs for TAGLN gene (2 alternative transcripts): NM_001001522.1 NM_003186.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001001522 NM_003186
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001001522                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001001522                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001001522  
Additional cDNA sequence: AB209555.1 AK223002.1 AK314043.1 BC004927.1 BC010946.1 BC065829.1 BC092415.1 BC093050.1 BT019648.1 BT019649.1 BX640723.1 CR536484.1 CR541681.1 CR592460.1 CR594443.1 CR594882.1 CR597887.1 CR600882.1 CR605812.1 CR606909.1 CR611459.1 CR612359.1 CR615909.1 CR626280.1 D17409.1 M83106.1 M95787.1
24/51 DOTS entries (see all 51
): DT.450977 DT.92461872 DT.100688943 DT.102840249 DT.95332543 DT.100688949 DT.100664339 DT.95333302 DT.92461860 DT.100688951 DT.100805934 DT.100805938 DT.95162555 DT.100041913 DT.100688936 DT.421136 DT.100871648 DT.95073168 DT.120753112 DT.120753132 DT.95207334 DT.100805943 DT.40278703 DT.91757737
24/889 AceView cDNA sequences (see all 889
):AI754513 CD616561 BM694262 BC041624 AK075137 AI753279 Z39199 BU627814 CA414910 CA488955 CA412584 AI754472 BE907538 BQ004206 AI446240 BQ777879 BQ027112 BU682453 BM988481 F05615 BF002907 BF222699 BM788990 CR605812
highest scoring ESTs for TAGLN :D17409 AA160872 AA291505 AA320531 AA363326 AA365766 AA367378 AA371322 AA374465 AA385898
Unigene Cluster for TAGLN: Transgelin Hs.410977 [show with all ESTs ] Unigene Representative Sequence: AB209555 GeneLoc Exon Structure 5/10 Alternative Splicing Database (ASD) splice patterns (SP) for TAGLN (see all 10
) ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b · 11c · 11d · 11e · 11f SP1 :       -   -   -   -   -   -     -                       SP2 :       -   -   -   -   -   -                           SP3 :         -   -   -   -   -                           SP4 :         -   -   -   -   -                           SP5 :               -   -                          
About this scheme ECgene alternative splicing isoforms for TAGLN 3 Ensembl transcripts including schematic representations : ENST00000375278
ENST00000278968
ENST00000392951
Expression for TAGLN
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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TAGLN expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for TAGLN 1 / 2 / 3
8 probe-sets matching TAGLN gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ACAGGCTACGSOURCE GeneReport for Unigene cluster: Hs.410977 Expression variation in blood from EXPOLDB for TAGLN
Orthologs for TAGLN
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for TAGLN gene from 5/8 species (see all 8
)
About this table Species with no ortholog for TAGLN ENSEMBL Gene Tree for TAGLN Paralogs for TAGLN (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for TAGLN gene TAGLN2 2 TAGLN3 2
SNPs/Variants for TAGLN (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for TAGLN (up to first 250kb)
Disorders & Mutations for TAGLN
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 600818 9 Novoseek disease relationships for TAGLN gene
About this table
Medical News for TAGLN (Possibly Related Articles in
Doctor's Guide )
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--
Publications for TAGLN (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/127 PubMed articles for TAGLN gene (see all 127
): A novel gene encoding a smooth muscle protein is overexpressed in senescent human fibroblasts. (PubMed id 1520290) 1, 2, 3, 4 Thweatt R....Goldstein S. (1992) Expression and cytogenetic localization of the human SM22 gene (TAGLN). (PubMed id 9615232) 1, 3, 4 Camoretti-Mercado B....Solway J. (1998) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Structure and expression of the human SM22alpha gene, assignment of the gene to chromosome 11, and repression of the promoter activity by cytosine DNA methylation. (PubMed id 9276683) 3, 4 Yamamura H.... Takahashi K. (1997) Purification, characterization, and partial sequence analysis of a new 25-kDa actin-binding protein from bovine aorta: a SM22 homolog. (PubMed id 8117285) 2, 3 Kobayashi R....Hidaka H. (1994) Gene cloning and nucleotide sequence of SM22 alpha from the chicken gizzard smooth muscle. (PubMed id 1872880) 3, 4 Nishida W.... Kiwada K. (1991) Mutagenesis analysis of human SM22: characterization of actin binding. (PubMed id 11053353) 1, 3 Fu Y....Solway J. (2000) Transgelin functions as a suppressor via inhibition of ARA54-enhanced androgen receptor transactivation and prostate cancer cell growth. (PubMed id 17082327) 1, 3 Yang Z....Chang C. (2007) Identification of transgelin as a potential novel biomarker for gastric adenocarcinoma based on proteomics technology. (PubMed id 18446369) 1, 3 Huang Q....Lin X. (2008) Crystal structure of human transgelin. (PubMed id 18291675) 1, 3 Li M....Rao Z. (2008)
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Genome Databases showing TAGLN
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing TAGLN
(According to HUGE )
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Specialized Databases showing TAGLN (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for TAGLN (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for TAGLN:
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