TAF8 Gene
protein-coding GIFtS : 53
GC06P042127
TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa (Previous names: TATA box binding protein (TBP)-associated factor, RNA polymerase II, A, 45/50kDa, taube nuss homolog (mouse) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: TBN )
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Aliases & Descriptions for TAF8
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases 43 2 FLJ32821 1 , 2 II 2 OTTHUMP00000016392 2 TAF 2 TAF(II)43 1 , 2 TAFII43 2 , 3 TBN 2 , 3 hTAFII43 3
Descriptions Protein taube nuss 3 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa 2 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50 kD 2 TAF8 RNA polymerase II, TATA box binding protein-associated factor, 43kDa 1 TATA box binding protein (TBP)-associated factor, RNA polymerase II, A, 45/50kDa 1 , 2 TBP-associated factor 43 kDa 3 TBP-associated factor 8 2 , 3 TBP-associated factor TAFII43 2 TBP-associated factor, RNA polymerase II, 43 kD 2 Transcription initiation factor TFIID 43 kDa subunit 3 taube nuss homolog 2 taube nuss homolog (mouse) 1
Search outside databases for aliases for TAF8 genePrevious GC identifer: GC00U991138
Summaries for TAF8 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for TAF8 : This gene encodes one of several TATA-binding protein (TBP)-associated factors (TAFs), which areintegral subunits of the general transcription factor complex TFIID. TFIID recognizes the corepromoter of many genes and nucleates the assembly of a transcription preinitiation complexcontaining RNA polymerase II and other initiation factors. The protein encoded by this genecontains an H4-like histone fold domain, and interacts with several subunits of TFIID includingTBP and the histone-fold protein TAF10. Alternatively spliced transcript variants have beendescribed, but their biological validity has not been determined. [provided by RefSeq] UniProtKB/Swiss-Prot: TAF8_HUMAN, Q7Z7C8 Function : Transcription factor TFIID is one of the general factors required for accurate andregulated initiation by RNA polymerase II. Mediates both basal and activator-dependenttranscription. Plays a role in the differentiation of preadipocyte fibroblasts to adipocytes,however, does not seem to play a role in differentiation of myoblasts. Required for theintegration of TAF10 in the TAF complex. May be important for survival of cells of the inner cellmass which constitute the pluripotent cell population of the early embryo (By similarity)
Gene Wiki entry for TAF8
Genomic Location for TAF8
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
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Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 6p21.1 Ensembl cytogenetic band: 6p21.1 HGNC cytogenetic band: 6p21.1 TAF8 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure
GeneLoc location for GC06P042127:
(about GC identifiers )
Start:
42,126,229 bp from pter
End:
42,163,170 bp from pter
Size:
36,942 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000006.10 NT_007592.14 Proteins for TAF8
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: TAF8_HUMAN, Q7Z7C8 (See
protein sequence )Recommended Name: Transcription initiation factor TFIID subunit 8 Size : 310 amino acids; 34262 Da
Subunit : TFIID is composed of TATA binding protein (TBP) and a number of TBP-associated factors(TAFs). Interacts with TBP, TAF1, TAF6, TAF10, TAF11 and TAF13. Component also of a small TAFcomplex (SMAT) containing TAF8, TAF10 and SUPT7L. Forms a heterodimer with TAF10. Interaction withTAF10 is mediated mainly via its histone fold domain while interaction with SUPT7L is via itsC-terminal region
Subcellular location : Nucleus. Cytoplasm (By similarity). Note=Localized in the cytoplasm andtransported from the cytoplasm to the nucleus in some cells, possibly depending on the functionalor developmental state of the cell (By similarity)
Miscellaneous : 'Taube nuss' means "empty nut' in German
Sequence caution : Sequence=BAB71460.1; Type=Frameshift; Positions=240;
Secondary accessions : Q5T0K1 Q8N4R9 Q96M52Alternative splicing : 4 isoforms : Q7Z7C8-1 Q7Z7C8-2 Q7Z7C8-3 Q7Z7C8-4
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_612639.2 ENSEMBL proteins: ENSP00000362069 ENSP00000312792 ENSP00000362073 ENSP00000362068 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for TAF8: Assays for TAF8:
Protein
Domains/ Families for TAF8(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q7Z7C8 ProtoNet protein and cluster: Q7Z7C8
UniProtKB/Swiss-Prot: TAF8_HUMAN, Q7Z7C8 Domain : Ectopic expression of the histone fold domain acts as a dominant-negative mutant resultingin differentiation inhibition Similarity : Belongs to the TAF8 familySimilarity : Contains 1 histone-fold domain
Gene Function for TAF8
(According to MGI Jun 06 2009, UniProtKB ,
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_138572 Applied Biosystems Silencer ® siRNAs for TAF8 Sigma-Aldrich siRNA for TAF8 Sigma-Aldrich shRNA for TAF8 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_138572                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_138572                                  untagged cDNA clones in CMV expression vector (see all 3 ): BC033728  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_138572 UniProtKB/Swiss-Prot: TAF8_HUMAN, Q7Z7C8 Function : Transcription factor TFIID is one of the general factors required for accurate andregulated initiation by RNA polymerase II. Mediates both basal and activator-dependenttranscription. Plays a role in the differentiation of preadipocyte fibroblasts to adipocytes,however, does not seem to play a role in differentiation of myoblasts. Required for theintegration of TAF10 in the TAF complex. May be important for survival of cells of the inner cellmass which constitute the pluripotent cell population of the early embryo (By similarity) Induction : Induced with triglyceride accumulation
2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Taf8) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for TAF8
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for TAF8 5/90 Interacting proteins for TAF8 (ENSP00000362073 3 ) via UniProtKB, MINT, and/or STRING (see all 90
)About this table 5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
):
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Drugs & Compounds for TAF8 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Transcripts for TAF8(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_138572 Sigma-Aldrich siRNA for TAF8 Sigma-Aldrich shRNA for TAF8 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_138572
REFSEQ mRNAs for TAF8 gene: NM_138572.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_138572
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_138572                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_138572                                  untagged cDNA clones in CMV expression vector (see all 3 ): BC033728  
Additional cDNA sequence: AF086309.1 AF465841.1 AK057383.1 AK303097.1 AL833401.1 BC119678.1 BC119679.1
16 DOTS entries : DT.100773233 DT.421486 DT.121342217 DT.108065 DT.97795211 DT.97846170 DT.40292936 DT.75145214 DT.95150036 DT.97846169 DT.121342110 DT.92036337 DT.95357755 DT.97812883 DT.97846168 DT.121342254
24/128 AceView cDNA sequences (see all 128
):BM758180 BQ437299 BM758910 BM756230 AW815571 BM746812 BM758727 BM758732 CD636453 BM758091 BM756275 BM749804 BU189966 BM757582 BM758085 BM758051 BM758723 CA430966 BM755747 BM741104 BQ669192 BM750602 CD514233 BM759016
Unigene Cluster for TAF8: TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa Hs.520122 [show with all ESTs ] Unigene Representative Sequence: NM_138572 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for TAF8 (see all 8
) ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13a · 13b SP1 :         -     -       -       -   -     -             SP2 :         -     -       -       -                   SP3 :         -     -       -                         SP4 :             -       -                         SP5 :         -     -                              
About this scheme ECgene alternative splicing isoforms for TAF8 4 Ensembl transcripts including schematic representations : ENST00000372978
ENST00000320973
ENST00000372982
ENST00000372977
Expression for TAF8
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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TAF8 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for TAF8 1 / 2
9 probe-sets matching TAF8 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CAGATTAAAASOURCE GeneReport for Unigene cluster: Hs.520122
Orthologs for TAF8
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for TAF8 gene from 5/12 species (see all 12
)
About this table Species with no ortholog for TAF8 ENSEMBL Gene Tree for TAF8 Paralogs for TAF8 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for TAF8 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for TAF8 (up to first 250kb)
Disorders & Mutations for TAF8
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 609514 Human Genome Epidemiology Navigator: TAF8 (1 document)
Medical News for TAF8 (Possibly Related Articles in
Doctor's Guide )
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Publications for TAF8 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/21 PubMed articles for TAF8 gene (see all 21
): The TBN protein, which is essential for early embryonic mouse development, is an inducible TAFII implicated in adipogenesis. (PubMed id 14580349) 1, 3, 4 Guermah M.... Roeder R.G. (2003) The nuclear import of TAF10 is regulated by one of its three histone fold domain-containing interaction partners. (PubMed id 15870280) 3, 4 Soutoglou E....Tora L. (2005) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) Identification of a small TAF complex and its role in the assembly of TAF-containing complexes. (PubMed id 17375202) 1, 4 Demeny M.A....Tora L. (2007) Genomics and transcription analysis of human TFIID. (PubMed id 9569032) 1, 3 Purrello M....Roeder R. (1998) Transcriptomic and genetic studies identify IL-33 as a candidate gene for Alzheimer's disease. (PubMed id 19204726) 3 Chapuis J....Lambert J.C. (2009) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 4 Dephoure N.... Gygi S.P. (2008) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 4 Gerhard D.S....Malek J. (2004) The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404) 4 Mungall A.J.... Beck S. (2003) A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription. (PubMed id 11963920) 3 Tora L. (2002)
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Aliases
TAF8 (Gene Symbol) 43 FLJ32821 II OTTHUMP00000016392 TAF TAF(II)43 TAFII43 TBN hTAFII43 Protein taube nuss TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50 kD TAF8 RNA polymerase II, TATA box binding protein-associated factor, 43kDa TATA box binding protein (TBP)-associated factor, RNA polymerase II, A, 45/50kDa TBP-associated factor 43 kDa TBP-associated factor 8 TBP-associated factor TAFII43 TBP-associated factor, RNA polymerase II, 43 kD Transcription initiation factor TFIID 43 kDa subunit taube nuss homolog taube nuss homolog (mouse)
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Genome Databases showing TAF8
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing TAF8
(According to HUGE )
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Specialized Databases showing TAF8 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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