TAF6L Gene
protein-coding GIFtS: 59
GC11P062295
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TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa (Previous names: TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65 kD ) Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases & Descriptions for TAF6L
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
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| Aliases |
|---|
| FLJ11136 2 | | MGC4288 2 | | PAF65-alpha 3 | | PAF65A 1, 2, 3 |
| | | Descriptions |
|---|
| PCAF-associated factor 65 alpha 3 | | TAF6-like RNA polymerase II 2 | TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65 kD 1, 2 | TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa 2 | TAF6-like RNA polymerase II, p300/CBP-associated factor-associated factor, 65kDa 1 | | p300/CBP-associated factor (PCAF)-associated factor 65 2 |
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| | Search outside databases for aliases for TAF6L genePrevious GC identifers: GC11P065051 GC11P064114 GC11P062790 GC11P062314 |
Summaries for TAF6L(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for TAF6L: Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes a protein that is a component of the PCAF histone acetylase complex and structurally similar to one of the histone-like TAFs, TAF6. The PCAF histone acetylase complex, which is composed of more than 20 polypeptides some of which are TAFs, is required for myogenic transcription and differentiation. [provided by RefSeq] UniProtKB/Swiss-Prot: TAF6L_HUMAN, Q9Y6J9Function: Functions as a component of the PCAF complex. The PCAF complex is capable of efficiently acetylating histones in a nucleosomal context. The PCAF complex could be considered as the human version of the yeast SAGA complexGene Wiki entry for TAF6L |
Genomic Location for TAF6L
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the TAF6L gene 
Entrez Gene cytogenetic band: 11q12.3 Ensembl cytogenetic band: 11q12.3 HGNC cytogenetic band: 11q12.3TAF6L Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11P062295:
(about GC identifiers)
Start:
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62,295,451 bp from pter |
End:
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62,311,390 bp from pter |
Size:
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15,940 bases |
Orientation:
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plus strand |
RefSeq DNA sequence:- NC_000011.8 NT_033903.7
| Proteins for TAF6L
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TAF6L_HUMAN, Q9Y6J9 (See
protein sequence)Recommended Name: TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L Size: 622 amino acids; 67814 Da
Subunit: The PCAF complex is composed of a number of TBP-associated factors (TAFS), such as TAF5, TAF5L, TAF6, TAF6L, TAF9, TAF10 and TAF12, PCAF, and also PCAF-associated factors (PAFs), such as TADA2L/ADA2, TADA3L/ADA3 and SPT3. Component of the STAGA transcription coactivator-HAT complex, at least composed of SUPT3H, GCN5L2, TAF5L, TAF6L, SUPT7L, TADA3L, TAD1L, TAF10, TAF12, TRRAP and TAF9
Subcellular location: Nucleus
Secondary accessions: Q96HA6Post-translational modifications:
Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_006464.1
ENSEMBL proteins: ENSP00000294168
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for TAF6L: Assays for TAF6L: | Protein
Domains/ Families for TAF6L(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9Y6J9
ProtoNet protein and cluster: Q9Y6J9 1 Blocks protein family: IPB011442 Protein of unknown function DUF1546
UniProtKB/Swiss-Prot: TAF6L_HUMAN, Q9Y6J9Similarity: Belongs to the TAF6 family | Gene Function for TAF6L
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_018336
Applied Biosystems Silencer® siRNAs for TAF6L
Sigma-Aldrich siRNA for TAF6L  Sigma-Aldrich shRNA for TAF6L  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006473                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006473                                  untagged cDNA clone in CMV expression vector: NM_006473 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_006473
UniProtKB/Swiss-Prot: TAF6L_HUMAN, Q9Y6J9Function: Functions as a component of the PCAF complex. The PCAF complex is capable of efficiently acetylating histones in a nucleosomal context. The PCAF complex could be considered as the human version of the yeast SAGA complex4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for TAF6L
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for TAF6L (Your Favorite Gene powered by Ingenuity) 
5/19 Interacting proteins for TAF6L (ENSP000002941683 Q9Y6J91, 2) via UniProtKB, MINT, and/or STRING (see all 19
)About this table
5 Gene Ontology (GO) biological process terms (links to tree view): About this table
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Drugs & Compounds for TAF6L(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
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Browse Tocris compounds for TAF6L
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Transcripts for TAF6L(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_018336
Sigma-Aldrich siRNA for TAF6L  Sigma-Aldrich shRNA for TAF6L  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_006473 REFSEQ mRNAs for TAF6L gene: NM_006473.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_006473               OriGene GFP tagged cDNA clone in CMV expression vector: NM_006473                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006473                                  untagged cDNA clone in CMV expression vector: NM_006473  Additional cDNA sequence: AF069735.1 AK289499.1 AK301145.1 AK310054.1 AK314330.1 BC008785.2 9 DOTS entries: DT.408270 DT.95082500 DT.208262 DT.120700964 DT.40129632 DT.100754561 DT.92427491 DT.92427502 DT.101975986 24/200 AceView cDNA sequences (see all 200
):AI076233 AW772493 AI360158 BM967019 AW303570 AI290982 AA514879 AI224975 AI690272 AI805214 BM727632 BM789539 AW593799 AI400981 AI813433 AA379451 H98053 AI279305 CA489026 AI042217 BQ186037 BM719649 AI936697 AW517218
highest scoring ESTs for TAF6L:AF069735 AI497781 AI805214 AI826053 AI936697 AW005142 AW005151 AW006342 AW138832 BC008785 Unigene Cluster for TAF6L: TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa Hs.714400 [show with all ESTs]Unigene Representative Sequence: BC008785
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for TAF6L
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | ^ | 3 | ^ | 4a | · | 4b | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | · | 8c | ^ | 9a | · | 9b | ^ | 10 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | |   | |   | |   | - |   | |   | |
| SP2: | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for TAF6L
1 Ensembl transcript including schematic representation: ENST00000294168
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Expression for TAF6L
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| TAF6L expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for TAF6L
1 / 2 / 3 10 probe-sets matching TAF6L gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ATCGGCCGTA
SOURCE GeneReport for Unigene cluster: Hs.714400
Expression variation in blood from EXPOLDB for TAF6L |
Orthologs for TAF6L
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
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Orthologs for TAF6L gene from 5/8 species (see all 8
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About this table Species with no ortholog for TAF6L
ENSEMBL Gene Tree for TAF6L | Paralogs for TAF6L(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for TAF6L gene
- TAF62
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SNPs/Variants for TAF6L(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
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HapMap Linkage Disequilibrium images for TAF6L (up to first 250kb)
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Disorders & Mutations for TAF6L
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
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OMIM: 602946
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Medical News for TAF6L(Possibly Related Articles in
Doctor's Guide)
About This Section
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Publications for TAF6L (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/14 PubMed articles for TAF6L gene (see all 14
): |
Search for TAF6L
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
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Genome Databases showing TAF6L
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing TAF6L
(According to HUGE)
About This Section
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Specialized Databases showing TAF6L(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
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| About This Section
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| Services for TAF6L(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
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 Products for TAF6L:

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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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