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Aliases for TAF5 Gene

Aliases for TAF5 Gene

  • TAF5 RNA Polymerase II, TATA Box Binding Protein (TBP)-Associated Factor, 100kDa 2 3
  • TAFII100 3 4 6
  • TAF2D 3 4 6
  • TATA Box Binding Protein (TBP)-Associated Factor, RNA Polymerase II, D, 100kD 2 3
  • Transcription Initiation Factor TFIID 100 KDa Subunit 3 4
  • TAF(II)100 3 4
  • TAFII-100 3 4
  • Transcription Initiation Factor TFIID 100 KD Subunit 3
  • TATA Box Binding Protein (TBP)-Associated Factor 2D 3
  • Transcription Initiation Factor TFIID Subunit 5 3

External Ids for TAF5 Gene

Previous HGNC Symbols for TAF5 Gene

  • TAF2D

Previous GeneCards Identifiers for TAF5 Gene

  • GC10P104020
  • GC10P104361
  • GC10P105258
  • GC10P104792
  • GC10P105117
  • GC10P098758

Summaries for TAF5 Gene

Entrez Gene Summary for TAF5 Gene

  • Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes an integral subunit of TFIID associated with all transcriptionally competent forms of that complex. This subunit interacts strongly with two TFIID subunits that show similarity to histones H3 and H4, and it may participate in forming a nucleosome-like core in the TFIID complex. [provided by RefSeq, Jul 2008]

GeneCards Summary for TAF5 Gene

TAF5 (TAF5 RNA Polymerase II, TATA Box Binding Protein (TBP)-Associated Factor, 100kDa) is a Protein Coding gene. Among its related pathways are Disease and GPCR Pathway. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity and protein dimerization activity. An important paralog of this gene is TAF5L.

UniProtKB/Swiss-Prot for TAF5 Gene

  • TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed

Gene Wiki entry for TAF5 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TAF5 Gene

Genomics for TAF5 Gene

Regulatory Elements for TAF5 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for TAF5 Gene

Start:
103,367,967 bp from pter
End:
103,389,065 bp from pter
Size:
21,099 bases
Orientation:
Plus strand

Genomic View for TAF5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TAF5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TAF5 Gene

Proteins for TAF5 Gene

  • Protein details for TAF5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q15542-TAF5_HUMAN
    Recommended name:
    Transcription initiation factor TFIID subunit 5
    Protein Accession:
    Q15542
    Secondary Accessions:
    • A8K5B4
    • B2RMR0
    • B7ZKJ6
    • Q53EM4
    • Q5SYD5
    • Q86UZ7
    • Q9Y4K5

    Protein attributes for TAF5 Gene

    Size:
    800 amino acids
    Molecular mass:
    86830 Da
    Quaternary structure:
    • Homodimer. TFIID and PCAF are composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). TBP is not part of TFTC. Component of the TFTC-HAT complex, at least composed of TAF5L, TAF6L, TADA3L, SUPT3H/SPT3, TAF2/TAFII150, TAF4/TAFII135, TAF5/TAFII100, GCN5L2/GCN5, TAF10 and TRRAP. Interacts with SV40 Large T antigen.
    SequenceCaution:
    • Sequence=AAC50902.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAD97335.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for TAF5 Gene

    Alternative splice isoforms for TAF5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TAF5 Gene

Proteomics data for TAF5 Gene at MOPED

Post-translational modifications for TAF5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TAF5 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for TAF5 Gene

Domains for TAF5 Gene

Gene Families for TAF5 Gene

HGNC:
  • WDR :WD repeat domain containing

Suggested Antigen Peptide Sequences for TAF5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q15542

UniProtKB/Swiss-Prot:

TAF5_HUMAN :
  • Q15542
Domain:
  • Distinct domains of TAF5/TAFII100 are required for functional interaction with transcription factor TFIIFB (RAP30) and incorporation into the TFIID complex
  • Contains 1 LisH domain.
Family:
  • Belongs to the WD repeat TAF5 family.
Similarity:
  • Contains 6 WD repeats.
genes like me logo Genes that share domains with TAF5: view

Function for TAF5 Gene

Molecular function for TAF5 Gene

UniProtKB/Swiss-Prot Function: TAFs are components of the transcription factor IID (TFIID) complex, PCAF histone acetylase complex and TBP-free TAFII complex (TFTC). TAFs components-TIIFD are essential for mediating regulation of RNA polymerase transcription. TAF5/TAFII100 interacts strongly with the histone H4-related TAF6/TAFII80 and the histone H3-related TAF9/TAFII31, as well as a stable complex comprised of both TAF5/TAFII80 and TAF6/TAFII31. Apparently weaker interactions of TAF5/TAFII100 with TBP, TAF1/TAFII250, TAF11/TAFII28, and TAF12/TAFII20, but not TAF7/TAFII55, also have been observed

Gene Ontology (GO) - Molecular Function for TAF5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding --
GO:0003700 sequence-specific DNA binding transcription factor activity IMP 9045704
GO:0004402 contributes_to histone acetyltransferase activity IDA 10373431
GO:0005515 protein binding IPI 15899866
GO:0044212 transcription regulatory region DNA binding IDA 17996705
genes like me logo Genes that share ontologies with TAF5: view

Phenotypes for TAF5 Gene

GenomeRNAi human phenotypes for TAF5:
genes like me logo Genes that share phenotypes with TAF5: view

Animal Model Products

miRNA for TAF5 Gene

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for TAF5 Gene

Localization for TAF5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TAF5 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TAF5 Gene COMPARTMENTS Subcellular localization image for TAF5 gene
Compartment Confidence
nucleus 5
cytoskeleton 4
cytosol 2

Gene Ontology (GO) - Cellular Components for TAF5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm TAS --
GO:0005669 transcription factor TFIID complex IDA 14580349
GO:0005730 NOT nucleolus IDA 15637059
GO:0015629 actin cytoskeleton IDA --
genes like me logo Genes that share ontologies with TAF5: view

Pathways for TAF5 Gene

genes like me logo Genes that share pathways with TAF5: view

Gene Ontology (GO) - Biological Process for TAF5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006352 DNA-templated transcription, initiation IDA 9603525
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0006366 transcription from RNA polymerase II promoter TAS --
GO:0006367 transcription initiation from RNA polymerase II promoter TAS --
GO:0006368 transcription elongation from RNA polymerase II promoter TAS --
genes like me logo Genes that share ontologies with TAF5: view

Transcripts for TAF5 Gene

mRNA/cDNA for TAF5 Gene

Unigene Clusters for TAF5 Gene

TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TAF5

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for TAF5

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TAF5 Gene

No ASD Table

Relevant External Links for TAF5 Gene

GeneLoc Exon Structure for
TAF5
ECgene alternative splicing isoforms for
TAF5

Expression for TAF5 Gene

mRNA expression in normal human tissues for TAF5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TAF5 Gene

SOURCE GeneReport for Unigene cluster for TAF5 Gene Hs.96103

genes like me logo Genes that share expressions with TAF5: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TAF5 Gene

Orthologs for TAF5 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TAF5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TAF5 35
  • 99.71 (n)
  • 99.87 (a)
TAF5 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TAF5 35
  • 93.92 (n)
  • 96.5 (a)
TAF5 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TAF5 35
  • 94.08 (n)
  • 96.75 (a)
TAF5 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Taf5 35
  • 91.33 (n)
  • 96.62 (a)
Taf5 16
Taf5 36
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TAF5 36
  • 88 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 94 (a)
OneToMany
-- 36
  • 95 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Taf5 35
  • 91.85 (n)
  • 96.99 (a)
chicken
(Gallus gallus)
Aves TAF5 35
  • 78.69 (n)
  • 83.76 (a)
TAF5 36
  • 83 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TAF5 36
  • 80 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia taf5 35
  • 75.41 (n)
  • 83.57 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.13815 35
zebrafish
(Danio rerio)
Actinopterygii taf5 35
  • 72.12 (n)
  • 82.19 (a)
taf5 36
  • 77 (a)
OneToOne
wufc38g05 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP011678 35
  • 54.53 (n)
  • 54.47 (a)
fruit fly
(Drosophila melanogaster)
Insecta Taf5 35
  • 52.37 (n)
  • 45.56 (a)
Taf5 36
  • 43 (a)
OneToOne
CG4448 37
  • 40 (a)
Taf5 37
  • 41 (a)
can 37
  • 34 (a)
worm
(Caenorhabditis elegans)
Secernentea taf-5 35
  • 48.49 (n)
  • 36.23 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AEL246C 35
  • 47.67 (n)
  • 41.77 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes TAF5 35
  • 42.13 (n)
  • 27.78 (a)
TAF5 36
  • 30 (a)
OneToMany
TAF5 38
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0E23453g 35
  • 50.67 (n)
  • 42.67 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons TAF5 35
  • 48.85 (n)
  • 40.98 (a)
rice
(Oryza sativa)
Liliopsida Os06g0649500 35
  • 49.41 (n)
  • 43.64 (a)
wheat
(Triticum aestivum)
Liliopsida Ta.7323 35
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes taf5 35
  • 46.73 (n)
  • 39.29 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2112 36
  • 52 (a)
OneToOne
Species with no ortholog for TAF5:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for TAF5 Gene

ENSEMBL:
Gene Tree for TAF5 (if available)
TreeFam:
Gene Tree for TAF5 (if available)

Paralogs for TAF5 Gene

Paralogs for TAF5 Gene

Selected SIMAP similar genes for TAF5 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TAF5: view

Variants for TAF5 Gene

Sequence variations from dbSNP and Humsavar for TAF5 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs954347 -- 103,380,708(+) ctccc(G/T)ggttc intron-variant
rs1052182 -- 103,368,365(+) AGGAG(A/G)CAGTG missense, reference
rs1052183 -- 103,378,337(+) GATTT(G/T)CGAAC missense, reference
rs1052184 -- 103,379,969(+) TTGGG(C/T)CGGAC reference, missense
rs1132110 -- 103,380,012(+) CAATG(C/T)TTACC reference, missense

Relevant External Links for TAF5 Gene

HapMap Linkage Disequilibrium report
TAF5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TAF5 Gene

Disorders for TAF5 Gene

No disorders were found for TAF5 Gene.

No data available for UniProtKB/Swiss-Prot for TAF5 Gene

Publications for TAF5 Gene

  1. Molecular cloning and analysis of two subunits of the human TFIID complex: hTAFII130 and hTAFII100. (PMID: 8942982) Tanese N. … Admon A. (Proc. Natl. Acad. Sci. U.S.A. 1996) 2 3 4
  2. Localization of the gene (TAF2D) encoding the 100-kDa subunit (hTAFII100) of the human TFIID complex to chromosome 10 band q24-q25.2. (PMID: 8884287) Dubrovskaya V. … Tora L. (Genomics 1996) 2 3
  3. Structural analysis and dimerization potential of the human TAF5 subunit of TFIID. (PMID: 17227857) Bhattacharya S. … Jacobson R.H. (Proc. Natl. Acad. Sci. U.S.A. 2007) 3 4
  4. Specific interactions and potential functions of human TAFII100. (PMID: 9045704) Tao Y. … Roeder R.G. (J. Biol. Chem. 1997) 3 4
  5. Distinct domains of hTAFII100 are required for functional interaction with transcription factor TFIIF beta (RAP30) and incorporation into the TFIID complex. (PMID: 8758937) Dubrovskaya V. … Tora L. (EMBO J. 1996) 3 4

Products for TAF5 Gene

Sources for TAF5 Gene

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