TAF4 Gene
protein-coding GIFtS : 60
GC20M059983
TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa (Previous names: TATA box binding protein (TBP)-associated factor, RNA polymerase II, C1, 130kD )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: TAF4A, TAF2C1, TAF2C )
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Aliases & Descriptions for TAF4
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases FLJ41943 2 TAF(II)135 3 TAF2C 2 , 3 , 5 TAF2C1 2 , 3 , 5 TAF4A 2 , 3 TAFII-130 3 TAFII-135 3 TAFII130 1 , 2 , 3 , 5 TAFII135 1 , 2 , 3
Descriptions RNA polymerase II TBP-associated factor subunit C 3 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135 kD 2 TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa 2 TAF4 RNA polymerase II, TATA box binding protein-associated factor, 135kDa 1 TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135 kD 2 TATA box binding protein (TBP)-associated factor, RNA polymerase II, C1, 130kD 1 , 2 TBP-associated factor 4 2 , 3 Transcription initiation factor TFIID 135 kDa subunit 3 transcription initiation factor TFIID 135 kD subunit 2
Search outside databases for aliases for TAF4 genePrevious GC identifers: GC20M060313 GC20M061166 GC20M061235
Summaries for TAF4 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for TAF4 : Initiation of transcription by RNA polymerase II requires the activities of more than 70polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID),which binds to the core promoter to position the polymerase properly, serves as the scaffold forassembly of the remainder of the transcription complex, and acts as a channel for regulatorysignals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarilyconserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basaltranscription, serve as coactivators, function in promoter recognition or modify generaltranscription factors (GTFs) to facilitate complex assembly and transcription initiation. Thisgene encodes one of the larger subunits of TFIID that has been shown to potentiate transcriptionalactivation by retinoic acid, thyroid hormone and vitamin D3 receptors. In addition, this subunitinteracts with the transcription factor CREB, which has a glutamine-rich activation domain, andbinds to other proteins containing glutamine-rich regions. Aberrant binding to this subunit byproteins with expanded polyglutamine regions has been suggested as one of the pathogeneticmechanisms underlying a group of neurodegenerative disorders referred to as polyglutaminediseases. [provided by RefSeq] UniProtKB/Swiss-Prot: TAF4_HUMAN, O00268 Function : Makes part of TFIID is a multimeric protein complex that plays a central role inmediating promoter responses to various activators and repressors. Potentiates transcriptionalactivation by the AF-2S of the retinoic acid, vitamin D3 and thyroid hormone
Gene Wiki entry for TAF4
Genomic Location for TAF4
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the TAF4 gene Entrez Gene cytogenetic band: 20q13.33 Ensembl cytogenetic band: 20q13.33 HGNC cytogenetic band: 20q13.33 TAF4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 20 GeneLoc Exon Structure
GeneLoc location for GC20M059983:
(about GC identifiers )
Start:
59,983,249 bp from pter
End:
60,074,261 bp from pter
Size:
91,013 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000020.9 NT_011362.9 Proteins for TAF4
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: TAF4_HUMAN, O00268 (See
protein sequence )Recommended Name: Transcription initiation factor TFIID subunit 4 Size : 1085 amino acids; 110114 Da
Subunit : TFIID is composed of TATA binding protein (TBP) and a number of TBP-associated factors(TAFs). Component of the TFTC-HAT complex, at least composed of TAF5L, TAF6L, TADA3L, SUPT3H,TAF2, TAF4, TAF5, GCN5L2/GCN5, TAF10 and TRRAP. Interacts with SV40 Large T antigen
Subcellular location : Nucleus
PDB structure from and Proteopedia : 1H3O (3D)
 2P6V (3D)
 
Secondary accessions : A6NGD9 Q5TBP6 Q99721 Q9BR40 Q9BX42
REFSEQ proteins: NP_003176.2 ENSEMBL proteins: ENSP00000252996 ENSP00000349471 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for TAF4: Assays for TAF4:
Protein
Domains/ Families for TAF4(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry O00268 ProtoNet protein and cluster: O00268
2 Blocks protein families : IPB003894 TAF-like region IPB007900 Transcription initiation factor TFIID component TAF4 UniProtKB/Swiss-Prot: TAF4_HUMAN, O00268 Similarity : Belongs to the TAF4 familySimilarity : Contains 1 TAFH (NHR1) domain
Gene Function for TAF4
(According to MGI Jun 06 2009, UniProtKB ,
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003185 Applied Biosystems Silencer ® siRNAs for TAF4 Sigma-Aldrich siRNA for TAF4 Sigma-Aldrich shRNA for TAF4 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003185                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003185                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_003185  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003185 UniProtKB/Swiss-Prot: TAF4_HUMAN, O00268 Function : Makes part of TFIID is a multimeric protein complex that plays a central role inmediating promoter responses to various activators and repressors. Potentiates transcriptionalactivation by the AF-2S of the retinoic acid, vitamin D3 and thyroid hormone
8 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Taf4a) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for TAF4
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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4 Sigma-Aldrich "Your Favorite Gene" Pathways for TAF4 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for TAF4 5/96 Interacting proteins for TAF4 (ENSP00000252996 3 O00268 2 ) via UniProtKB, MINT, and/or STRING (see all 96
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006350 transcription
IEA -- GO:0006352 transcription initiation
IEA -- GO:0006355 regulation of transcription, DNA-dependent
IEA --
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Drugs & Compounds for TAF4 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for TAF4
Transcripts for TAF4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003185 Sigma-Aldrich siRNA for TAF4 Sigma-Aldrich shRNA for TAF4 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003185
REFSEQ mRNAs for TAF4 gene: NM_003185.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003185
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003185                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003185                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_003185  
Additional cDNA sequence: AK097268.1 AK097744.1 AK123937.1 U75308.1 Y11354.1
10 DOTS entries : DT.100801110 DT.100689087 DT.316603 DT.95135507 DT.100035104 DT.92422521 DT.95103674 DT.95117734 DT.97784750 DT.91896877
24/98 AceView cDNA sequences (see all 98
):H01461 AA487148 AA430176 BQ690529 AA810715 AI886593 BE349938 BU528666 BE465382 AA331385 BQ025239 AA937227 BM665879 BM718673 BE302229 AA994049 W32194 AA630360 R72727 BQ575177 BU742345 BQ684840 AA996280 BQ025504
highest scoring ESTs for TAF4 :U75308 Y11354 AA053537 AA148415 AA322472 AA331385 AA360405 AA430176 AA446484 AA487148
Unigene Cluster for TAF4: TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa Hs.18857 [show with all ESTs ] Unigene Representative Sequence: NM_003185 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for TAF4 ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20a · 20b · 20c SP1 :         -   -         -                     -   -         SP2 :                                       -   -         SP3 :                                                 SP4 :                                                
About this scheme ECgene alternative splicing isoforms for TAF4 2 Ensembl transcripts including schematic representations : ENST00000252996
ENST00000356981
Expression for TAF4
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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TAF4 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for TAF4 1 / 2 / 3
5 probe-sets matching TAF4 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TAAATTTTGCSOURCE GeneReport for Unigene cluster: Hs.18857 Expression variation in blood from EXPOLDB for TAF4
Orthologs for TAF4
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for TAF4 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for TAF4 ENSEMBL Gene Tree for TAF4 Paralogs for TAF4 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for TAF4 gene TAF4B 2
SNPs/Variants for TAF4 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for TAF4 (up to first 250kb)
Disorders & Mutations for TAF4
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 601796
Medical News for TAF4 (Possibly Related Articles in
Doctor's Guide )
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Publications for TAF4 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/40 PubMed articles for TAF4 gene (see all 40
): Human TAF(II)135 potentiates transcriptional activation by the AF-2s of the retinoic acid, vitamin D3, and thyroid hormone receptors in mammalian cells. (PubMed id 9192867) 2, 3, 4 Mengus G....Davidson I. (1997) Molecular cloning and analysis of two subunits of the human TFIID complex: hTAFII130 and hTAFII100. (PubMed id 8942982) 2, 3, 4 Tanese N....Admon A. (1996) The human TFIID components TAF(II)135 and TAF(II)20 and the yeast SAGA components ADA1 and TAF(II)68 heterodimerize to form histone-like pairs. (PubMed id 10594036) 1, 3, 4 Gangloff Y.-G....Davidson I. (2000) Novel subunits of the TATA binding protein free TAFII-containing transcription complex identified by matrix-assisted laser desorption/ionization-time of flight mass spectrometry following one-dimensional gel electrophoresis. (PubMed id 12601814) 3, 4 Cavusoglu N....Van Dorsselaer A. (2003) The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052) 3, 4 Deloukas P....Rogers J. (2001) Identification of TATA-binding protein-free TAFII-containing complex subunits suggests a role in nucleosome acetylation and signal transduction. (PubMed id 10373431) 3, 4 Brand M.... Tora L. (1999) Induced alpha-helix structure in the aryl hydrocarbon receptor transactivation domain modulates protein-protein interactions. (PubMed id 15641800) 1, 3 Watt K....McEwan I.J. (2005) Structural changes in TAF4b-TFIID correlate with promoter selectivity. (PubMed id 18206971) 3 Liu W.L....Tjian R. (2008) Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348) 3 Barbe L....Andersson-Svahn H. (2008) A functional interaction between ATF7 and TAF12 that is modulated by TAF4. (PubMed id 15735663) 3 Hamard P.J....Chatton B. (2005)
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AND OR
Aliases
TAF4 (Gene Symbol) FLJ41943 TAF(II)135 TAF2C TAF2C1 TAF4A TAFII-130 TAFII-135 TAFII130 TAFII135 RNA polymerase II TBP-associated factor subunit C TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135 kD TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa TAF4 RNA polymerase II, TATA box binding protein-associated factor, 135kDa TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135 kD TATA box binding protein (TBP)-associated factor, RNA polymerase II, C1, 130kD TBP-associated factor 4 Transcription initiation factor TFIID 135 kDa subunit transcription initiation factor TFIID 135 kD subunit
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Genome Databases showing TAF4
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing TAF4
(According to HUGE )
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Specialized Databases showing TAF4 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
NIEHS-SNPs http://egp.gs.washington.edu/data/taf4/
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-- Services for TAF4 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009