Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TAF1D Gene

protein-coding   GIFtS: 44
GCID: GC11M093529

TATA box binding protein (TBP)-associated factor, RNA polymerase...

(Previous name: Josephin domain containing 3 )
(Previous symbol: JOSD3)
  Search for TAF1D
in our new
 Human Malady Compendium 
Biological research products
for TAF1D
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
TATA Box Binding Protein (TBP)-Associated Factor, RNA Polymerase I, D,
41kDa1 2
     RNA Polymerase I-Specific TBP-Associated Factor 41 KDa2 3
JOSD31 2 3 5     TATA Box-Binding Protein-Associated Factor 1D2 3
TAF(I)411 2     TBP-Associated Factor 1D2 3
Josephin Domain Containing 31 2     RAFI412 5
Transcription Initiation Factor SL1/TIF-IB Subunit D2 3     MGC53061
TAFI412 3     TATA Box-Binding Protein-Associated Factor RNA Polymerase I Subunit D2

External Ids:    HGNC: 287591   Entrez Gene: 791012   Ensembl: ENSG000001660127   OMIM: 6128235   UniProtKB: Q9H5J83   

Export aliases for TAF1D gene to outside databases

Previous GC identifers: GC11M093183 GC11M093195 GC11M093203 GC11M093472 GC11M093479 GC11M093480 GC11M093487 GC11M093503 GC11M093511 GC11M093519


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for TAF1D:
TAF1D is a member of the SL1 complex, which includes TBP (MIM 600075) and TAF1A (MIM 604903), TAF1B (MIM 604904), and
TAF1C (MIM 604905), and plays a role in RNA polymerase I transcription (Wang et al., 2004 (PubMed 15520167); Gorski et
al., 2007 (PubMed 17318177)).(supplied by OMIM, Jun 2009)

UniProtKB/Swiss-Prot: TAF1D_HUMAN, Q9H5J8
Function: Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC
(preinitiation complex) during RNA polymerase I-dependent transcription. The rate of PIC formation probably is
primarily dependent on the rate of association of SL1/TIF-IB with the rDNA promoter. SL1/TIF-IB is involved in
stabilization of nucleolar transcription factor 1/UBTF on rDNA. Formation of SL1/TIF-IB excludes the association of
TBP with TFIID subunits




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000011.9  NC_018922.1  NT_167190.1  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TAF1D gene promoter:
         GR   AML1a   MEF-2   FOXO3   FOXO3b   MEF-2A   FOXO3a   aMEF-2   GR-alpha   RSRFC4   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTAF1D promoter sequence
   Search SABiosciences Chromatin IP Primers for TAF1D

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TAF1D


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q21   Ensembl cytogenetic band:  11q21   HGNC cytogenetic band: 11q21

TAF1D Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TAF1D gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11M093529:  view genomic region     (about GC identifiers)

Start:
93,463,114 bp from pter      End:
93,517,557 bp from pter
Size:
54,444 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: TAF1D_HUMAN, Q9H5J8 (See protein sequence)
Recommended Name: TATA box-binding protein-associated factor RNA polymerase I subunit D  
Size: 278 amino acids; 32058 Da
Subunit: Component of the transcription factor SL1/TIF-IB complex, composed of TBP and at least TAF1A, TAF1B, TAF1C and
TAF1D. Interacts with UBTF
Subcellular location: Nucleus
Secondary accessions: Q6I9Y6

Explore the universe of human proteins at neXtProt for TAF1D: NX_Q9H5J8

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9H5J8

  • TAF1D Protein expression data from MOPED and PaxDb:    About this image 
    TAF1D Protein Expression
    REFSEQ proteins: NP_077021.1  
    ENSEMBL proteins: 
     ENSP00000314971   ENSP00000435087   ENSP00000376944   ENSP00000441633   ENSP00000433119  
     ENSP00000446311   ENSP00000410409   ENSP00000435304   ENSP00000431570   ENSP00000432852  

    Human Recombinant Protein Products for TAF1D: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate: TAF1D
    OriGene Custom Protein Services for TAF1D 
    GenScript Custom Purified and Recombinant Proteins Services for TAF1D
    Novus Biologicals TAF1D Lysate
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for TAF1D

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--

    TAF1D for ontologies           About GeneDecksing



    TAF1D Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for TAF1D 
    GenScript Custom Superior Antibodies Services for TAF1D
    Search for Antibodies for TAF1D at Abcam  
    Uscn Antibodies for TAF1D
    ThermoFisher Antibody for TAF1D

    Assay Products for TAF1D: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for TAF1D
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for TAF1D


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ProtoNet protein and cluster: Q9H5J8


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: TAF1D_HUMAN, Q9H5J8
    Function: Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC
    (preinitiation complex) during RNA polymerase I-dependent transcription. The rate of PIC formation probably is
    primarily dependent on the rate of association of SL1/TIF-IB with the rDNA promoter. SL1/TIF-IB is involved in
    stabilization of nucleolar transcription factor 1/UBTF on rDNA. Formation of SL1/TIF-IB excludes the association of
    TBP with TFIID subunits

         Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
    GO:0005515protein binding IPI15520167
         
    TAF1D for ontologies           About GeneDecksing


    Animal Models:
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for TAF1D 

    miRNA
    Products:
        
    OriGene 3'-UTR Clone: TAF1D
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat TAF1D
    Search QIAGEN for miScript miRNA Assays for microRNAs that regulate TAF1D
    SwitchGear 3'UTR luciferase reporter plasmidTAF1D 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TAF1D (see all 4)
    OriGene shRNA RFP: TAF1D
    OriGene siRNA: TAF1D
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TAF1D
    Sirion Biotech Custom design and validation of potent shRNA sequences against TAF1D 

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for TAF1D
    Sirion Biotech Customized adenovirus for overexpression of TAF1D 
    Sirion Biotech Customized adenovirus for potent knockdown of TAF1D

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TAF1D (see all 4)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TAF1D
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: TAF1D (NM_024116)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for TAF1D
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TAF1D 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for TAF1D
    Search LifeMap BioReagents cell lines for TAF1D
    Sirion Biotech Customized stable knockdown cell line services for TAF1D 
    Sirion Biotech Customized inducible knockdown cell line services for TAF1D
    Sirion Biotech Customized stable overexpressing cell line services for TAF1D
    Sirion Biotech Customized inducible overexpressing cell line services for TAF1D

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TAF1D


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TAF1D

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/46 Interacting proteins for TAF1D (Q9H5J81, 2, 3 ENSP000003149714) via UniProtKB, MINT, STRING, and/or I2D (see all 46)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    PTNP212462, 3MINT-8272696 I2D: score=5 
    HAP1P542572, 3MINT-8272619 I2D: score=4 
    CEP70Q8NHQ12, 3MINT-8272553 I2D: score=2 
    DDAH2O958652, 3MINT-8272564 I2D: score=2 
    EZH2Q159102, 3MINT-8272575 I2D: score=2 
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0006355regulation of transcription, DNA-dependent IEA--

    TAF1D for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for TAF1D
    Search CenterWatch for drugs/clinical trials and news about TAF1D 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for TAF1D gene: 
    NM_024116.3  

    Unigene Cluster for TAF1D:

    TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa
    Hs.355750  [show with all ESTs]
    Unigene Representative Sequence: NM_024116
    18/22 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 22):
    ENST00000323981 ENST00000526015(uc001pdz.3) ENST00000534079 ENST00000546088
    ENST00000393259 ENST00000530769(uc001pec.3) ENST00000525928 ENST00000529435
    ENST00000529900 ENST00000540232 ENST00000527169 ENST00000530089 ENST00000533794
    ENST00000529794 ENST00000527068 ENST00000448108(uc001ped.3) ENST00000528734
    ENST00000534770

    miRNA
    Products:
         
    OriGene 3'-UTR Clone: TAF1D
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat TAF1D
    Search QIAGEN for miScript miRNA Assays for microRNAs that regulate TAF1D
    SwitchGear 3'UTR luciferase reporter plasmidTAF1D 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TAF1D (see all 4)
    OriGene shRNA RFP: TAF1D
    OriGene siRNA: TAF1D
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TAF1D
    Sirion Biotech Custom design and validation of potent shRNA sequences against TAF1D 
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TAF1D (see all 4)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TAF1D
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: TAF1D (NM_024116)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for TAF1D
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TAF1D 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TAF1D
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat TAF1D
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TAF1D
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TAF1D

    Additional cDNA sequence: 

    AF086435.1 AF275800.1 CR457369.1 

    22 DOTS entries:

    DT.86854061  DT.406975  DT.70100314  DT.95360426  DT.86836428  DT.100774278  DT.100816148  DT.120738161 
    DT.100773939  DT.100799894  DT.75140193  DT.92449371  DT.100698516  DT.100705466  DT.120738126  DT.40108354 
    DT.92449375  DT.95360432  DT.100028608  DT.100689424  DT.97846568  DT.99987011 

    24/305 AceView cDNA sequences (see all 305):

    AI924984 CB158271 AJ705413 AA025809 AA279492 CB158825 AA593602 AA568549 
    AA279839 W93424 BM977597 AA442907 BQ015041 BU621028 AK128061 AI273474 
    BQ879138 AI924962 CD679396 AF275800 BM887714 BQ015609 BM970125 CR609260 

    GeneLoc Exon Structure

    5/11 Alternative Splicing Database (ASD) splice patterns (SP) for TAF1D (see all 11)    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c · 3d ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9a · 9b · 9c · 9d ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b ^
    SP1:                                                        -                             -           -                 -           -     -           -         
    SP2:                                                                                      -           -                 -           -     -           -         
    SP3:                                                                                                  -                 -           -     -           -         
    SP4:                                                                                                                                                  -         
    SP5:                                                        -                                                                                                   

    ExUns: 13a · 13b ^ 14
    SP1:                  
    SP2:        -         
    SP3:                  
    SP4:        -         
    SP5:                  


    ECgene alternative splicing isoforms for TAF1D

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TAF1D expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: AATGTCAAAG
    TAF1D Expression
    About this image
    See TAF1D Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for TAF1D

    SOURCE GeneReport for Unigene cluster: Hs.355750
        SABiosciences Custom PCR Arrays for TAF1D

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TAF1D
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat TAF1D
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TAF1D
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TAF1D
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TAF1D

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for TAF1D gene from 3/9 species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Taf1d1 , 5 TATA box binding protein (Tbp)-associated factor, RNA more1, 5 72.14(n)1
    60.45(a)1
      9 (4.78 cM)5
    753161  NM_029248.21  NP_083524.21 
     153062145 
    chicken
    (Gallus gallus)
    Aves TAF1D1 TATA box binding protein (TBP)-associated factor, RNA more 53.4(n)
    41.33(a)
      419002  XM_417196.3  XP_417196.1 
    lizard
    (Anolis carolinensis)
    Reptilia TAF1D6
    --
    39(a)
    1 ↔ 1
    3(196115155-196119261)


    ENSEMBL Gene Tree for TAF1D (if available)
    TreeFam Gene Tree for TAF1D (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/86 NCBI SNPs in TAF1D are shown (see all 86    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1168632701,2
    F--93468680(+) AAAAAA/TACAAA 4 -- us2k1 int11Minor allele frequency- T:0.09EA 120
    rs596512461,2
    --93468759(+) AACCCA/GGGAGA 4 -- us2k1 int10--------
    rs1827664391,2
    --93468847(+) TAGTAC/TTAAAG 3 -- us2k1 int10--------
    rs770425801,2
    F--93468851(+) ATTAAA/TGATAC 3 -- us2k1 int11Minor allele frequency- T:0.11EA 120
    rs1387686391,2
    --93468890(+) TTACAA/TTACTA 3 -- int1 us2k10--------
    rs1418888001,2
    --93468899(+) TAAGCA/GTCTGA 3 -- int1 us2k10--------
    rs1877384531,2
    --93469076(+) GAAATC/GAAATG 2 -- int1 us2k10--------
    rs1932502731,2
    --93469182(+) CACAGA/GGTTAA 2 -- ut31 us2k10--------
    rs1855917211,2
    --93469210(+) ATAAAA/GTTCTG 2 -- ut31 us2k10--------
    rs1380695531,2
    C--93469218(+) CTGGG-/TTT   
       CAGAA
    TTTCT
    2 -- us2k1 ut310--------

    HapMap Linkage Disequilibrium report for TAF1D (93463114 - 93517557 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for TAF1D: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TAF1D
    DNA2.0 Custom Variant and Variant Library Synthesis for TAF1D

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    TAF1D for disorders           About MalaCards

    TAF1D for disorders           About GeneDecksing

    OMIM gene information: 612823    OMIM disorders: --


    Export disorders for TAF1D gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for TAF1D gene, integrated from 9 sources (see all 15):
    (articles sorted by number of sources associating them with TAF1D)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A novel nuclear protein, MGC5306 interacts with DNA polymerase beta and has a potential role in cellular phenotype. (PubMed id 15520167)1, 2, 3, 9 Wang L....Banerjee S. (2004)
    2. A novel TBP-associated factor of SL1 functions in RNA polymerase I transcription. (PubMed id 17318177)1, 2, 3 Gorski J.J.... Zomerdijk J.C.B.M. (2007)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    5. Quantitative proteomics identifies the Myb-binding pr otein p160 as a novel target of the von Hippel-Lindau tumor suppressor. (PubMed id 21386990)1 Lai Y....Shiio Y. (2011)
    6. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (2011)
    7. A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
    8. A directed protein interaction network for investigat ing intracellular signal transduction. (PubMed id 21900206)1 Vinayagam A....Wanker E.E. (2011)
    9. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332)2 Mayya V.... Han D.K. (2009)
    10. Defining the human deubiquitinating enzyme interactio n landscape. (PubMed id 19615732)1 Sowa M.E....Harper J.W. (2009)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 79101 HGNC: 28759 AceView: MGC5306 Ensembl:ENSG00000166012 euGenes: HUgn79101
    ECgene: TAF1D H-InvDB: TAF1D

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for TAF1D Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for TAF1D gene:
    Search GeneIP for patents involving TAF1D

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for TAF1D  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TAF1D   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TAF1D  
     OriGene Protein Over-expression Lysate for TAF1D   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for TAF1D   OriGene 3'-UTR Clone for TAF1D  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TAF1D   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TAF1D  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for TAF1D   OriGene Custom Protein Services for TAF1D  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TAF1D
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TAF1D
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TAF1D
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TAF1D
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TAF1D
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TAF1D
     GenScript Custom Purified and Recombinant Proteins Services for TAF1D GenScript cDNA clones with any tag delivered in your preferred vector for TAF1D
     GenScript Custom Assay Services for TAF1D GenScript Custom Superior Antibodies Services for TAF1D
     GenScript Custom overexpressing Cell Line Services for TAF1D CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in TAF1D promoter
     Search Chromatin IP Primers for TAF1D
     RT2 qPCR Primer Assay in human, mouse, rat TAF1D
     Search GNC Networks for TAF1D
     SABiosciences Custom PCR Arrays for TAF1D
     Search Tocris compounds for TAF1D
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     TAF1D lysates
     Search for Antibodies for TAF1D at Abcam
     See all of Abcam's Antibodies, Kits and Proteins for TAF1D
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     TAF1D Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for TAF1D
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TAF1D
     SwitchGear 3'UTR luciferase reporter plasmids for TAF1D
     SwitchGear Promoter luciferase reporter plasmids for TAF1D
     ThermoFisher Antibody for TAF1D
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TAF1D
     inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for TAF1D
    Sirion Biotech Customized:
     stable knockdown cell line services for TAF1D
     inducible knockdown cell line services for TAF1D
     design and validation of potent shRNA sequences against TAF1D
     adenovirus for potent knockdown of TAF1D
     adenovirus for overexpression of TAF1D
     stable overexpressing cell line services for TAF1D
     inducible overexpressing cell line services for TAF1D
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 13 May 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      TAF1D gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 106 solr: 1.4