TAF15 Gene
protein-coding GIFtS : 57
GC17P031160
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa (Previous names: TATA box binding protein (TBP)-associated factor, RNA polymerase II, N, 68kD (RNA-binding protein 56) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: TAF2N )
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Aliases & Descriptions for TAF15
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases Npl3 1 , 2 RBP56 1 , 2 , 3 , 5 TAF(II)68 3 TAF2N 2 , 3 , 5 TAFII68 2 , 3 hTAFII68 1 , 2
Descriptions RBP56/CSMF fusion 2 RNA-binding protein 56 2 , 3 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68 kD 2 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 2 TAF15 RNA polymerase II, TATA box binding protein-associated factor, 68kDa 1 TATA box binding protein (TBP)-associated factor, RNA polymerase II, N, 68kD (RNA-binding protein 56) 1 , 2 TATA box-binding protein-associated factor 2N (RNA-binding protein 56) 2 TBP-associated factor 15 2
Search outside databases for aliases for TAF15 genePrevious GC identifers: GC17P033906 GC17P036172 GC17P033985 GC17P034282
Summaries for TAF15 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for TAF15 : Initiation of transcription by RNA polymerase II requires the activities of more than 70polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID),which binds to the core promoter to position the polymerase properly, serves as the scaffold forassembly of the remainder of the transcription complex, and acts as a channel for regulatorysignals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarilyconserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basaltranscription, serve as coactivators, function in promoter recognition or modify generaltranscription factors (GTFs) to facilitate complex assembly and transcription initiation. Thisgene encodes a subunit of TFIID present in a subset of TFIID complexes. Translocations involvingchromosome 17 and chromosome 9, where the gene for the nuclear receptor CSMF is located, result ina gene fusion product that is an RNA binding protein associated with a subset of extraskeletalmyxoid chondrosarcomas. Two transcripts encoding different isoforms have been identified.[provided by RefSeq] UniProtKB/Swiss-Prot: RBP56_HUMAN, Q92804 Function : RNA and ssDNA-binding protein that may play specific roles during transcriptioninitiation at distinct promoters. Can enter the preinitiation complex together with the RNApolymerase II (Pol II)
Gene Wiki entry for TAF15
Genomic Location for TAF15
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the TAF15 gene Entrez Gene cytogenetic band: 17q11.1-q11.2 Ensembl cytogenetic band: 17q12 HGNC cytogenetic band: 17q11.1-q11.2 TAF15 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P031160:
(about GC identifiers )
Start:
31,160,596 bp from pter
End:
31,198,351 bp from pter
Size:
37,756 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000017.9 NT_010799.14 Proteins for TAF15
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: RBP56_HUMAN, Q92804 (See
protein sequence )Recommended Name: TATA-binding protein-associated factor 2N Size : 592 amino acids; 61830 Da
Subunit : Belongs to the RNA polymerase II (Pol II) transcriptional multiprotein complex, togetherwith the TATA-binding protein (TBP) and other TBP-associated factors (TAF(II)s). Binds SF1
Subcellular location : Nucleus (Potential)
Secondary accessions : Q92751Alternative splicing : 2 isoforms : Q92804-1 Q92804-2
Post-translational modifications:
Arg-206 is dimethylated, probably to asymmetric dimethylarginine1
Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_003478.1 NP_631961.1 ENSEMBL proteins: ENSP00000309558 ENSP00000378041 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: TAF15 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for TAF15: Assays for TAF15:
Protein
Domains/ Families for TAF15(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q92804 ProtoNet protein and cluster: Q92804
2 Blocks protein families : IPB000504 RNA-binding region RNP-1 (RNA recognition motif) IPB001876 Zn-finger UniProtKB/Swiss-Prot: RBP56_HUMAN, Q92804 Similarity : Belongs to the RRM TET familySimilarity : Contains 1 RanBP2-type zinc fingerSimilarity : Contains 1 RRM (RNA recognition motif) domain
Gene Function for TAF15
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
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Sigma-Aldrich ,
RNAi Products ,
Clones , and
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OriGene , and/or
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003487 Applied Biosystems Silencer ® siRNAs for TAF15 Sigma-Aldrich siRNA for TAF15 Sigma-Aldrich shRNA for TAF15 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003487                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003487                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_003487  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_139215 UniProtKB/Swiss-Prot: RBP56_HUMAN, Q92804 Function : RNA and ssDNA-binding protein that may play specific roles during transcriptioninitiation at distinct promoters. Can enter the preinitiation complex together with the RNApolymerase II (Pol II)
4 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for TAF15
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for TAF15 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for TAF15 5/13 Interacting proteins for TAF15 (ENSP00000309558 3 ) via UniProtKB, MINT, and/or STRING (see all 13
)About this table
Drugs & Compounds for TAF15 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for TAF15
Transcripts for TAF15(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003487 Sigma-Aldrich siRNA for TAF15 Sigma-Aldrich shRNA for TAF15 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003487 NM_139215
REFSEQ mRNAs for TAF15 gene (2 alternative transcripts): NM_003487.2 NM_139215.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003487 NM_139215
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003487                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003487                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_003487  
Additional cDNA sequence: AK000881.1 AK000942.1 AK022003.1 AK130999.1 AK304520.1 AK307637.1 AK313223.1 AK314194.1 BC030591.2 BC039129.1 BC046099.1 BC048985.1 U51334.1 X98893.1
22 DOTS entries : DT.212660 DT.95125326 DT.100777303 DT.91768446 DT.92066613 DT.75169741 DT.120906110 DT.120906141 DT.423558 DT.95358439 DT.101962968 DT.120906140 DT.91768444 DT.91973540 DT.100023625 DT.120906190 DT.306380 DT.91768450 DT.91918658 DT.92004256 DT.95125327 DT.95253068
24/216 AceView cDNA sequences (see all 216
):AW117240 BC030591 AL702463 BM848308 AW104422 AI301573 AU077342 BU543375 BC046099 BM915658 BC048985 BF732740 BU161472 BU541157 BX111719 BE644621 NM_139215 AW294733 BC039129 BU543864 BQ069861 AI636891 BU688925 BF724572
highest scoring ESTs for TAF15 :U51334 AA662359 AA765679 AA857343 AA862078 AA910882 AA918903 AI679882 AI800559 AL516729
Unigene Cluster for TAF15: TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa Hs.402752 [show with all ESTs ] Unigene Representative Sequence: BC046099 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for TAF15 (see all 8
) ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10a · 10b ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 SP1 :                     -     -                       SP2 :           -           -                           SP3 :                                               SP4 :                                               SP5 :             -                                  
About this scheme ECgene alternative splicing isoforms for TAF15 2 Ensembl transcripts including schematic representations : ENST00000311979
ENST00000394533
Expression for TAF15
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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TAF15 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for TAF15 1 / 2 / 3
3 probe-sets matching TAF15 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ATCCATAGTGSOURCE GeneReport for Unigene cluster: Hs.402752 Expression variation in blood from EXPOLDB for TAF15
UniProtKB/Swiss-Prot: RBP56_HUMAN, Q92804 Tissue specificity : Ubiquitous. Observed in all fetal and adult tissues
Orthologs for TAF15
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for TAF15 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for TAF15 ENSEMBL Gene Tree for TAF15 Paralogs for TAF15 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for TAF15 gene FUS 2 EWSR1 2
SNPs/Variants for TAF15 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for TAF15 (up to first 250kb)
Disorders & Mutations for TAF15
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 601574 disorders : 612237 UniProtKB/Swiss-Prot: RBP56_HUMAN, Q92804
A chromosomal aberration involving TAF15/TAF2N is found in a form of extraskeletal myxoidchondrosarcomas (EMC). Translocation t(9;17)(q22;q11) with NR4A3
5 Novoseek disease relationships for TAF15 gene
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Medical News for TAF15 (Possibly Related Articles in
Doctor's Guide )
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Publications for TAF15 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/34 PubMed articles for TAF15 gene (see all 34
): Genomic structure of the human RBP56/hTAFII68 and FUS/TLS genes. (PubMed id 9795213) 1, 2, 3, 4 Morohoshi F....Ohki M. (1998) Cloning and mapping of a human RBP56 gene encoding a putative RNA binding protein similar to FUS/TLS and EWS proteins. (PubMed id 8954779) 2, 3, 4 Morohoshi F.... Ohki M. (1996) hTAF(II)68, a novel RNA/ssDNA-binding protein with homology to the pro-oncoproteins TLS/FUS and EWS is associated with both TFIID and RNA polymerase II. (PubMed id 8890175) 1, 3, 4 Bertolotti A.... Tora L. (1996) Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. (PubMed id 15782174) 3, 4 Ong S.E.... Mann M. (2004) The transcriptional repressor ZFM1 interacts with and modulates the ability of EWS to activate transcription. (PubMed id 9660765) 3, 4 Zhang D.... Childs G. (1998) Stimulation of hTAFII68 (NTD)-mediated transactivation by v-Src. (PubMed id 15094065) 1, 3 Lee H.J....Kim J. (2004) EWS, but not EWS-FLI-1, is associated with both TFIID and RNA polymerase II: interactions between two members of the TET family, EWS and hTAFII68, and subunits of TFIID and RNA polymerase II complexes. (PubMed id 9488465) 1, 3 Bertolotti A....Tora L. (1998) The multifunctional FUS, EWS and TAF15 proto-oncoproteins show cell type-specific expression patterns and involvement in cell spreading and stress response. (PubMed id 18620564) 1, 3 Andersson M.K....Aman P. (2008) Recurrent rearrangement of the Ewing's sarcoma gene, EWSR1, or its homologue, TAF15, with the transcription factor CIZ/NMP4 in acute leukemia. (PubMed id 12359745) 1, 3 Martini A....Marynen P. (2002) The hTAF II 68-TEC fusion protein functions as a strong transcriptional activator. (PubMed id 18330902) 1, 3 Kim S....Kim J. (2008)
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AND OR
Aliases
TAF15 (Gene Symbol) Npl3 RBP56 TAF(II)68 TAF2N TAFII68 hTAFII68 RBP56/CSMF fusion RNA-binding protein 56 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68 kD TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa TAF15 RNA polymerase II, TATA box binding protein-associated factor, 68kDa TATA box binding protein (TBP)-associated factor, RNA polymerase II, N, 68kD (RNA-binding protein 56) TATA box-binding protein-associated factor 2N (RNA-binding protein 56) TBP-associated factor 15
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Genome Databases showing TAF15
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing TAF15
(According to HUGE )
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Specialized Databases showing TAF15 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Proteins for TAF15
Publications for TAF15
SNPs for TAF15
Search Box for TAF15
Services for TAF15
Summaries for TAF15
Technologies for TAF15
Transcripts for TAF15
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009