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Aliases & Descriptions for TACR1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Descriptions NK-1 receptor 2 , 3 neurokinin 1 receptor 2 tachykinin 1 receptor (substance P receptor, neurokinin 1 receptor) 2 tachykinin receptor 1 2 , 3 tachykinin receptor 1 (substance P receptor; neurokinin-1 receptor) 2
Search outside databases for aliases for TACR1 genePrevious GC identifers: GC02M075413 GC02M075233 GC02M075250
Summaries for TACR1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for TACR1 : This gene belongs to a gene family of tachykinin receptors. These tachykinin receptors arecharacterized by interactions with G proteins and contain seven hydrophobic transmembrane regions.This gene encodes the receptor for the tachykinin substance P, also referred to as neurokinin 1.The encoded protein is also involved in the mediation of phosphatidylinositol metabolism ofsubstance P. [provided by RefSeq] UniProtKB/Swiss-Prot: NK1R_HUMAN, P25103 Function : This is a receptor for the tachykinin neuropeptide substance P. It is probably associatedwith G proteins that activate a phosphatidylinositol-calcium second messenger system. The rankorder of affinity of this receptor to tachykinins is: substance P > substance K > neuromedin-K
Gene Wiki entry for TACR1 (Tachykinin_receptor_1)
Genomic Location for TACR1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the TACR1 gene Entrez Gene cytogenetic band: 2p13.1 Ensembl cytogenetic band: 2p13.1 HGNC cytogenetic band: 2p13.1-p12 TACR1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02M075187:
(about GC identifiers )
Start:
75,129,738 bp from pter
End:
75,280,122 bp from pter
Size:
150,385 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000002.10 NT_022184.14 Proteins for TACR1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: NK1R_HUMAN, P25103 (See
protein sequence )Recommended Name: Substance-P receptor Size : 407 amino acids; 46251 Da
Subcellular location : Cell membrane; Multi-pass membrane protein
REFSEQ proteins (2 alternative transcripts):
NP_001049.1 NP_056542.1 ENSEMBL proteins: ENSP00000303522 ENSP00000386448 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for TACR1: Assays for TACR1:
Protein
Domains/ Families for TACR1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P25103 ProtoNet protein and cluster: P25103
2 Blocks protein families : IPB000046 Neurokinin NK1 receptor signature IPB001681 Neurokinin receptor signature UniProtKB/Swiss-Prot: NK1R_HUMAN, P25103 Similarity : Belongs to the G-protein coupled receptor 1 family
Gene Function for TACR1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001058 Applied Biosystems Silencer ® siRNAs for TACR1 Sigma-Aldrich siRNA and siRNA Panels for TACR1 Sigma-Aldrich shRNA Panels and shRNA for TACR1 Explore Sigma-Aldrich super-pooled esiRNAs Clones: Invitrogen Clones for TACR1 Millipore Clones for the Expression of TACR1
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001058                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001058                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001058  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001058 UniProtKB/Swiss-Prot: NK1R_HUMAN, P25103 Function : This is a receptor for the tachykinin neuropeptide substance P. It is probably associatedwith G proteins that activate a phosphatidylinositol-calcium second messenger system. The rankorder of affinity of this receptor to tachykinins is: substance P > substance K > neuromedin-K
Genatlas biochemistry entry for TACR1 :tachykinin 1 receptor,substance P/neurokinine 1 receptor,G protein coupled receptorsuperfamily,expressed in mucosal but non peripheral mononuclear cells,involved in mucosalimmunomodulation
8 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Tacr1) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for TACR1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for TACR1 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for TACR1 5/22 Interacting proteins for TACR1 (ENSP00000303522 3 ) via UniProtKB, MINT, and/or STRING (see all 22
)About this table 5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
):
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Drugs & Compounds for TACR1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for TACR1
Sigma-Aldrich Small Molecules for TACR1:Antagonist
Compounds for TACR1 available from Tocris Bioscience About this table 10/51 Novoseek chemical compound relationships for TACR1 gene (see all 51
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
septide
91.23
54
10051129 (4), 8985159 (3), 7685292 (2), 7891319 (2) (see all 25 )
fk 888
87.58
17
7531648 (4), 7504102 (2), 7516885 (2), 9399104 (1) (see all 9 )
senktide
85.99
12
9402049 (1), 15145080 (1), 7538871 (1), 8583573 (1) (see all 11 )
ly303870
82.15
5
7473161 (5)
gr 82334
81.98
5
7538871 (1), 7679029 (1), 7823080 (1), 7679026 (1) (see all 5 )
fk 224
81.53
4
7504102 (1), 8529964 (1), 8821532 (1), 7889271 (1)
ezlopitant
80.77
5
11030465 (1), 11092597 (1), 17431029 (1), 12184141 (1) (see all 5 )
rpr 100893
80.46
1
9443945 (1)
eledoisin
78.13
5
1711392 (1), 1281775 (1), 1708071 (1), 16127708 (1)
gr 73632
76.68
3
7538871 (1), 16077032 (1), 7679026 (1)
About this table
Transcripts for TACR1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001058 Sigma-Aldrich siRNA and siRNA Panels for TACR1 Sigma-Aldrich shRNA Panels and shRNA for TACR1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001058 NM_015727
REFSEQ mRNAs for TACR1 gene (2 alternative transcripts): NM_001058.3 NM_015727.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001058 NM_015727
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001058                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001058                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001058  
Additional cDNA sequence: AK289765.1 AY462098.1 BC074911.2 BC074912.2 BC095528.1 M74290.1 M76675.1 M81797.1 M84425.1 M84426.1 S62045.1
5 DOTS entries : DT.309603 DT.70105091 DT.100742331 DT.432141 DT.95093567
13 AceView cDNA sequences :AY462098 CD246198 M84425 NM_015727 NM_001058 BC074912 M74290 BC074911 M81797 M76675 S62045 M84426 AL120339
highest scoring ESTs for TACR1 :M74290 AY462098 BE765394 CD246198 M76675 M81797 M84425 M84426 S62045 AL120339
Unigene Cluster for TACR1: Tachykinin receptor 1 Hs.633301 [show with all ESTs ] Unigene Representative Sequence: NM_001058 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations : ENST00000305249
ENST00000409848
Expression for TACR1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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TACR1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for TACR1 1 / 2 / 3
10 probe-sets matching TACR1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AACTCACAGTSOURCE GeneReport for Unigene cluster: Hs.633301 Expression variation in blood from EXPOLDB for TACR1
Orthologs for TACR1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for TACR1 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for TACR1 ENSEMBL Gene Tree for TACR1 Paralogs for TACR1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for TACR1 gene TACR3 2 TACR2 2
SNPs/Variants for TACR1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for TACR1 (up to first 250kb)
Disorders & Mutations for TACR1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 162323 10/62 Novoseek disease relationships for TACR1 gene (see all 62
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
astrocytoma
62.63
32
7516885 (3), 7512575 (2), 1328053 (2), 1378485 (1) (see all 23 )
inflammation
54.39
75
12559111 (3), 11275376 (3), 8240667 (2), 16777450 (2) (see all 52 )
hyperalgesia
53.00
19
1381521 (2), 15964684 (2), 9323204 (2), 17123731 (2) (see all 12 )
migraine
30.79
8
8846424 (2), 11281817 (1), 15155133 (1), 7536309 (1) (see all 7 )
asthma
28.45
12
8240667 (2), 17392578 (2), 15155133 (1), 15334652 (1) (see all 8 )
inflammatory bowel diseases
26.51
11
7529913 (2), 17368292 (1), 11073811 (1), 10940277 (1) (see all 7 )
causalgia
20.93
1
12855316 (1)
anxiety disorders
16.35
1
16594257 (1)
colitis ulcerative
15.97
9
11073811 (2), 17368292 (1), 7587798 (1), 10940277 (1) (see all 6 )
anxiety depression
15.77
2
16983662 (1), 18600583 (1)
About this table Human Genome Epidemiology Navigator: TACR1 (7 documents)
Medical News for TACR1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for TACR1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/521 PubMed articles for TACR1 gene (see all 521
): Human substance P receptor (NK-1): organization of the gene, chromosome localization, and functional expression of cDNA clones. (PubMed id 1657150) 1, 2, 3, 4 Gerard N.P.... Gerard C. (1991) Differential activation of intracellular effector by two isoforms of human neurokinin-1 receptor. (PubMed id 1310144) 1, 3, 4 Fong T.M.... Strader C.D. (1992) Molecular cloning, structural characterization and functional expression of the human substance P receptor. (PubMed id 1718267) 1, 3, 4 Takeda Y.... Krause J.E. (1991) The primary structure and gene organization of human substance P and neuromedin K receptors. (PubMed id 1312928) 1, 3, 4 Takahashi K.... Nakanishi S. (1992) Amino-aromatic interaction between histidine 197 of the neurokinin-1 receptor and CP 96345. (PubMed id 8384323) 1, 3, 4 Fong T.M.... Strader C.D. (1993) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Identification of single-nucleotide polymorphisms of the human neurokinin 1 receptor gene and pharmacological characterization of a Y192H variant. (PubMed id 15452552) 3, 4 Randolph G.P....Duffy R.A. (2004) The human tachykinin NK1 (short form) and tachykinin NK4 receptor: a reappraisal. (PubMed id 11864635) 3, 4 Page N.M. and Bell N.J. (2002) Isolation and characterisation of the human lung NK-1 receptor cDNA. (PubMed id 1659396) 3, 4 Hopkins B.... Graham A. (1991) Differences in the length of the carboxyl terminus mediate functional properties of neurokinin-1 receptor. (PubMed id 18713853) 1, 3 Lai J.P....Douglas S.D. (2008)
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Genome Databases showing TACR1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing TACR1
(According to HUGE )
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--
Specialized Databases showing TACR1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
Wikipedia http://en.wikipedia.org/wiki/Tachykinin
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-- Services for TACR1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for TACR1:
Tocris compounds for TACR1
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