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Aliases & Descriptions for TACC1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DKFZp686K18126 2 FLJ42304 2 Ga55 2 KIAA1103 2 , 3
Descriptions Gastric cancer antigen Ga55 2 , 3 Taxin 1 2 , 3 transforming, acidic coiled-coil containing protein 1 2
Search outside databases for aliases for TACC1 genePrevious GC identifers: GC08P038196 GC08P038859 GC08P038326 GC08P038603
Summaries for TACC1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for TACC1 : This locus may represent a breast cancer candidate gene. It is located close to FGFR1 on a regionof chromosome 8 that is amplified in some breast cancers. Three transcript variants encodingdifferent isoforms have been found for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: TACC1_HUMAN, O75410 Function : Likely involved in the processes that promote cell division prior to the formation ofdifferentiated tissues
Gene Wiki entry for TACC1
Genomic Location for TACC1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the TACC1 gene Entrez Gene cytogenetic band: 8p11.23 Ensembl cytogenetic band: 8p11.23 HGNC cytogenetic band: 8p11 TACC1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 8 GeneLoc Exon Structure
GeneLoc location for GC08P038733:
(about GC identifiers )
Start:
38,734,008 bp from pter
End:
38,829,703 bp from pter
Size:
95,696 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000008.9 NT_007995.14 Proteins for TACC1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: TACC1_HUMAN, O75410 (See
protein sequence )Recommended Name: Transforming acidic coiled-coil-containing protein 1 Size : 805 amino acids; 87794 Da
Subunit : Interacts with KIAA0097/CH-TOG and with the oncogenic transcription factor YEATS4.Interacts with the Aurora kinases A and B (STK6 and AURKB). Interacts with LSM7, TDRD7 and SNRPG.Interacts with GCN5L2 and PCAF
Subcellular location : Cytoplasm. Nucleus. Note=Nucleus during interphase. Weakly concentrated atcentrosomes during mitosis
Developmental stage : Expressed at high level during early embryogenesis
Miscellaneous : Down-regulated in a subset of cases of breast cancer
Secondary accessions : Q6Y687 Q86YG7 Q8IUJ2 Q8IUJ3 Q8IUJ4 Q8IZG2 Q8NEY7 Q9UPP9Alternative splicing : 8 isoforms : O75410-1 O75410-2 O75410-3 O75410-4 O75410-5 O75410-6 O75410-7 O75410-8 (Additional isoforms seem to exist)
Post-translational modifications:
Isoform 1 is heavily phosphorylated; isoform 6 is not. Phosphorylated upon DNA damage, probably byATM or ATR1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001116296.1 NP_001139688.1 NP_006274.2 ENSEMBL proteins: ENSP00000369263 ENSP00000321703 ENSP00000332794 ENSP00000276520 ENSP00000327818 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for TACC1: Assays for TACC1:
Protein
Domains/ Families for TACC1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry O75410 ProtoNet protein and cluster: O75410
1 Blocks protein family : IPB007707 Transforming acidic coiled-coil-containing UniProtKB/Swiss-Prot: TACC1_HUMAN, O75410 Similarity : Belongs to the TACC familySimilarity : Contains 2 SPAZ (Ser/Pro-rich AZU-1) domains
Gene Function for TACC1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_006283 Applied Biosystems Silencer ® siRNAs for TACC1 Sigma-Aldrich siRNA and siRNA Panels for TACC1 Sigma-Aldrich shRNA for TACC1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001122824                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001122824                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001122824  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_006283 UniProtKB/Swiss-Prot: TACC1_HUMAN, O75410 Function : Likely involved in the processes that promote cell division prior to the formation ofdifferentiated tissues
Genatlas biochemistry entry for TACC1 :transforming acidic coiled-coil gene 1,highly expressed during early embryogenesis,potentiallypromoting tumorigenicity in breast cancers with amplification of the 8p11 region 1 Gene Ontology (GO) molecular function term (links to tree view) :
About this table
Pathways & Interactions for TACC1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for TACC1 5/8 Interacting proteins for TACC1 (ENSP00000369263 3 O75410 1 ) via UniProtKB, MINT, and/or STRING (see all 8
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for TACC1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
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Browse Tocris compounds for TACC1
Transcripts for TACC1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
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RNAi Products from Invitrogen ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_006283 Sigma-Aldrich siRNA and siRNA Panels for TACC1 Sigma-Aldrich shRNA for TACC1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001122824 NM_006283
REFSEQ mRNAs for TACC1 gene (3 alternative transcripts): NM_001122824.1 NM_001146216.1 NM_006283.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001122824 NM_006283
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001122824                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001122824                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001122824  
Additional cDNA sequence: AB029026.1 AF049910.1 AF075051.1 AK057659.1 AK098223.1 AK124297.1 AK129750.1 AK294931.1 AK295071.1 AK295841.1 AK303596.1 AK304507.1 AK304725.1 AK304774.1 AK308849.1 AK314620.1 AY039239.1 AY072873.2 AY072874.1 AY072875.1 AY072876.2 AY139007.1 AY177411.1 BC041391.1 BX647696.1 CR605417.1 CR933618.1
24/25 DOTS entries (see all 25
): DT.445878 DT.75170359 DT.95240638 DT.100797363 DT.100031422 DT.40125901 DT.92006861 DT.120636115 DT.425248 DT.100031423 DT.95222429 DT.100010104 DT.100737639 DT.100797378 DT.120636076 DT.120636091 DT.120636160 DT.40233461 DT.95120300 DT.100736149 DT.100797361 DT.91680115 DT.91955944 DT.95075498
24/520 AceView cDNA sequences (see all 520
):BQ005713 BQ893716 AY072874 AA548642 AW664151 AY072876 AA180487 AA809926 BF063977 CD676485 BF438914 AW072909 BU174798 BE677181 AA179734 AI271933 BQ024487 AA279849 AI499959 AI143983 BU677937 BF222694 AI804791 CB217090
highest scoring ESTs for TACC1 :AF049910 AA002089 AA002134 AA010119 AA010120 AA013486 AA026546 AA026547 AA029318 AA029870
Unigene Cluster for TACC1: Transforming, acidic coiled-coil containing protein 1 Hs.279245 [show with all ESTs ] Unigene Representative Sequence: CR933618 GeneLoc Exon Structure 5/16 Alternative Splicing Database (ASD) splice patterns (SP) for TACC1 (see all 16
) ExUns: 1 ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b · 9c · 9d · 9e · 9f · 9g ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16a · 16b · SP1 :           -   -     -   -                 -               -   -   SP2 :                 -   -                 -       -         -   -   SP3 :           -   -   -   -   -   -   -   -   -   -   -   -   -               -   -   SP4 :                                                 -   -   SP5 :                                                 -   -  
ExUns: 16c ^ 17 ^ 18a · 18b ^ 19a · 19b ^ 20 SP1 :       -   -       SP2 :       -   -       SP3 :       -   -       SP4 :       -   -       SP5 :       -   -      
About this scheme ECgene alternative splicing isoforms for TACC1 5 Ensembl transcripts including schematic representations : ENST00000379931
ENST00000317827
ENST00000330691
ENST00000276520
ENST00000348567
Expression for TACC1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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TACC1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for TACC1 1 / 2 / 3
9 probe-sets matching TACC1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTTCATTGCCSOURCE GeneReport for Unigene cluster: Hs.279245 Expression variation in blood from EXPOLDB for TACC1
UniProtKB/Swiss-Prot: TACC1_HUMAN, O75410 Tissue specificity : Isoform 1, isoform 3 and isoform 5 are ubiquitous. Isoform 2 is stronglyexpressed in the brain, weakly detectable in lung and colon, and overexpressed in gastric cancer.Isoform 4 is not detected in normal tissues, but strong expression was found in gastric cancertissues
Orthologs for TACC1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for TACC1 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for TACC1 ENSEMBL Gene Tree for TACC1 Paralogs for TACC1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for TACC1 gene TACC3 2 TACC2 2
SNPs/Variants for TACC1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for TACC1 (up to first 250kb)
Disorders & Mutations for TACC1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 605301 5 Novoseek disease relationships for TACC1 gene
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Medical News for TACC1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for TACC1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/33 PubMed articles for TACC1 gene (see all 33
): Carcinogenesis and translational controls: TACC1 is down-regulated in human cancers and associates with mRNA regulators. (PubMed id 12165861) 1, 3, 4 Conte N.... Birnbaum D. (2002) Altered splicing pattern of TACC1 mRNA in gastric cancer. (PubMed id 12547166) 1, 3, 4 Line A.... Rees R.C. (2002) Cloning of TACC1, an embryonically expressed, potentially transforming coiled coil containing gene, from the 8p11 breast cancer amplicon. (PubMed id 10435627) 1, 3, 4 Still I.H.... Cowell J.K. (1999) Aurora B -TACC1 protein complex in cytokinesis. (PubMed id 15064709) 1, 3, 4 Delaval B.... Birnbaum D. (2004) TACC1-chTOG-Aurora A protein complex in breast cancer. (PubMed id 14603251) 1, 3, 4 Conte N.... Birnbaum D. (2003) Interaction of the transforming acidic coiled-coil 1 (TACC1) protein with ch-TOG and GAS41/NuBI1 suggests multiple TACC1-containing protein complexes in human cells. (PubMed id 11903063) 1, 3, 4 Lauffart B....Still I.H. (2002) The TACC domain identifies a family of centrosomal proteins that can interact with microtubules. (PubMed id 11121038) 1, 3, 4 Gergely F....Raff J.W. (2000) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455) 3, 4 Rush J.... Comb M.J. (2005) The transforming acidic coiled coil proteins interact with nuclear histone acetyltransferases. (PubMed id 14767476) 3, 4 Gangisetty O.... Still I.H. (2004)
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Genome Databases showing TACC1
(According to
Entrez Gene ,
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AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing TACC1
(According to HUGE )
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Specialized Databases showing TACC1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for TACC1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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