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TAC3 Gene

protein-coding   GIFtS: 60

GC12M055690
tachykinin 3
(Previous names: neuromedin K, neurokinin beta )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: NKNB)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
NKB 1, 2
NKNB 2, 3, 5
PRO1155 2
ZNEUROK1 1, 2, 3
Descriptions
gamma tachykinin 3 2
neurokinin B-like protein 2
neurokinin beta 1, 2
neurokinin-B protein 2
neuromedin K 1
neuromedin K, neurokinin beta 2
preprotachykinin B 2
tachykinin 3 2
External Ids
HGNC: 115211
Entrez Gene: 68662
UniProtKB: Q9UHF03
Ensembl: ENSG000001668637
Search outside databases for aliases for TAC3 gene

Previous GC identifers: GC12M057378 GC12M057628 GC12M057120

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: TKNK_HUMAN, Q9UHF0
Function: Tachykinins are active peptides which excite neurons, evoke behavioral responses, are
potent vasodilators and secretagogues, and contract (directly or indirectly) many smooth muscles
(By similarity)

Gene Wiki entry for TAC3

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the TAC3 gene  

Entrez Gene cytogenetic band: 12q13-q21   Ensembl cytogenetic band:  12q13.3   HGNC cytogenetic band: 12q13-q21

TAC3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M055690:     (about GC identifiers)

Start:
55,690,051 bp from pter
End:
55,696,592 bp from pter
Size:
6,542 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000012.10  NT_029419.11  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: TKNK_HUMAN, Q9UHF0 (See protein sequence)
Recommended Name: Tachykinin-3 precursor  
Size: 121 amino acids; 13438 Da
Subcellular location: Secreted
Developmental stage: In pregnancy, the expression of NKB is confined to the outer
syncytiotrophoblast of the placenta, significant concentrations of NKB can be detected in plasma
as early as week 9, and plasma concentrations of NKB are grossly elevated in pregnancy-induced
hypertension and pre-eclampsia
PDB structures from and Proteopedia :
1P9F (3D)    
Secondary accessions: Q6IAG2 Q71BC6 Q71BC9
Alternative splicing: 3 isoforms:  Q9UHF0-1   Q9UHF0-2   Q9UHF0-3   

REFSEQ proteins (2 alternative transcripts): 
NP_001006668.1  NP_037383.1  


ENSEMBL proteins: 
ENSP00000350236 ENSP00000377445 ENSP00000300108 ENSP00000368721 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (Neurokinin B )
Human Recombinant Proteins from Abnova (TAC3)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

3 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005576 extracellular region IEA--
GO:0005615 extracellular space TAS10866201
GO:0005625 soluble fraction TAS10866201
About this table

Antibodies for TAC3: 
Browse Antibodies Central at Invitrogen
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Sigma-Aldrich Antibodies for TAC3
Browse R&D Systems for Antibodies
Antibodies from Abcam (Neurokinin B ), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (TAC3)
Novus Biologicals Antibodies for TAC3

Assays for TAC3: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

2 InterPro domains/families:
 IPR003635 Neurokinin
 IPR013055 Tachy_Neuro_lke_CS


   GeneDecks  TAC3 for the domains selected above  
About GeneDecksing

Graphical View of Domain Structure for InterPro Entry Q9UHF0

ProtoNet protein and cluster: Q9UHF0

1 Blocks protein family: IPB002040 Tachykinin/Neurokinin

UniProtKB/Swiss-Prot: TKNK_HUMAN, Q9UHF0
Similarity: Belongs to the tachykinin family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (TAC3)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (TAC3)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_001006667

              Applied Biosystems Silencer® siRNAs for TAC3

              Sigma-Aldrich siRNA for TAC3  
                     Sigma-Aldrich shRNA for TAC3  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for TAC3
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001006667
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001006667
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_001006667 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_001006667

UniProtKB/Swiss-Prot: TKNK_HUMAN, Q9UHF0
Function: Tachykinins are active peptides which excite neurons, evoke behavioral responses, are
potent vasodilators and secretagogues, and contract (directly or indirectly) many smooth muscles
(By similarity)

Genatlas biochemistry entry for TAC3:
tachykinin 3,neurokinin B (neuromedin K)
1 MGI phenotypic allele for Tac2 (no phenotypes)

1 Gene Ontology (GO) molecular function term (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005102 receptor binding TAS10866201
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section



5/15 Interacting proteins for TAC3 (Q9UHF02 ENSP000003502363) via UniProtKB, MINT, and/or STRING (see all 15 )
InteractantInteraction Details
GeneCardExternal ID(s)
FEZ1Q996892MINT-65739
GPRASP1Q5JY772MINT-65737
PTNP212462MINT-65735
UBR1Q8IWV72MINT-65738
TACR3ENSP000003033253STRING (score=.999)
About this table

3 Gene Ontology (GO) biological process terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0007217 tachykinin receptor signaling pathway TAS10866201
GO:0007218 neuropeptide signaling pathway IEA--
GO:0007565 female pregnancy TAS10866201
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Compounds for TAC3 available from Tocris Bioscience
CompoundAction CAS number
Neurokinin B (human, porcine)Endogenous tachykinin peptide[86933-75-7]
SB 222200Potent, selective non-peptide NK3 antagonist. Brain penetrant[174635-69-9]
SB 218795Potent, selective non-peptide NK3 antagonist[174635-53-1]
SenktideTachykinin NK3 agonist[106128-89-6]
About this table


10/12 Novoseek chemical compound relationships for TAC3 gene (see all 12 )
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
senktide 93.27 19 10953048 (2), 8818331 (2), 7830490 (1), 9667146 (1) (see all 13)
eledoisin 86.80 9 1708071 (3), 1712834 (1), 16127708 (1), 1694464 (1) (see all 5)
septide 85.77 5 7824047 (1), 8882625 (1), 10753681 (1)
physalaemin 76.53 6 1708071 (3), 1694464 (1), 7824047 (1)
kassinin 74.68 3 8859022 (1), 7684358 (1)
bestatin 54.08 2 12788812 (1), 11071311 (1)
fmlp 18.55 2 7684358 (2)
superoxide 13.87 4 1704475 (1), 1697194 (1), 7684358 (1), 10189055 (1)
estradiol 0.00 1 7529897 (1)
nitric oxide 0.00 2 8751080 (1), 8882625 (1)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (TAC3)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (TAC3)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_001006667

              Sigma-Aldrich siRNA for TAC3  
                     Sigma-Aldrich shRNA for TAC3  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_013251  

REFSEQ mRNAs for TAC3 gene (2 alternative transcripts): 

NM_001006667.1   NM_013251.2   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_013251  

               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001006667
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001006667
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_001006667 

Additional cDNA sequence: 

AF186112.1 AF216586.1 AF537115.1 AF537118.1 AY358679.1 BC032145.2 CR457193.1 CR620932.1 

4 DOTS entries:

DT.410221  DT.101983456  DT.101983455  DT.101974196 

24/81 AceView cDNA sequences (see all 81 ):

BC032145 BX118017 AF186112 BC059387 NM_005379 AF537116 CD620409 AI832211 
AF537114 AF105424 AF537119 AF127026 AF537121 BX114126 AI139283 AF537118 
BG002828 AF537117 CD620413 AF537120 CR620932 AF537113 AY358679 AF537115 

highest scoring ESTs for TAC3:

AA004764 AF186112 AF216586 AF537113 AF537114 AF537115 AF537116 AF537117 AF537118 AF537119 

Unigene Cluster for TAC3:

Tachykinin 3
Hs.9730  [show with all ESTs]
Unigene Representative Sequence: AY358679


GeneLoc Exon Structure

5/10 Alternative Splicing Database (ASD) splice patterns (SP) for TAC3 (see all 10 )

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b
SP1:                                      -                                             
SP2:                                      -                             -               
SP3:                                      -           -                                 
SP4:                                      -                       -     -               
SP5:                                      -           -                 -               

About this scheme

ECgene alternative splicing isoforms for TAC3

4 Ensembl transcripts including schematic representations:
ENST00000357616  ENST00000393867  ENST00000300108  ENST00000379411  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

TAC3 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for TAC3

1 / 2 / 3

3 probe-sets matching TAC3 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
55518_at2, 3 U95-B 1 1.00 1.00 1.00 1.00 AA004764 0.80 1.00 0.91 1

219992_at2, 3 U133-A 1 1.00 1.00 -- -- NM_013251 0.60 1.00 0.82 1

219992_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
GeneDecks  TAC3 for binary patterns associated with the probe-sets selected above  
About GeneDecksing
About this table    
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: ACTTCTTTGT

SOURCE GeneReport for Unigene cluster: Hs.9730
(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for TAC3 gene from 5 species
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
TAC31   -- tachykinin 3 81.27(n)
74.38(a)
607315  XM_843938.1  XP_849031.1 
chimpanzee
(Pan troglodytes)
TAC31   -- tachykinin 3 99.72(n)
99.17(a)
746748  XM_001168338.1  XP_001168338.1 
cow
(Bos taurus)
TAC31   -- tachykinin 3 79.61(n)
68.6(a)
281513  NM_181017.1  NP_851360.1 
rat
(Rattus norvegicus)
Tac21   -- tachykinin 2 75.38(n)
66.67(a)
29191  NM_019162.1  NP_062035.1 
mouse
(Mus musculus)
Tac21, 5 105
tachykinin 21, 5 77.18(n)1
70.27(a)1
213341  NM_009312.11  NP_033338.11 
 AF1861165  BC0313485  (see all 8)
About this table        Species with no ortholog for TAC3

ENSEMBL Gene Tree for TAC3
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

  --
(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/29 NCBI SNPs in TAC3 are shown (see all 29 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 30)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 12 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs22918551,2
F,H55696458(-) GCCCCC/TGGCAC 1 -- ut51 ese34Minor allele frequency- T:0.10EA WA 1772
rs125799471,2
H55698257(+) ataatC/Ttaatt 1 -- ng314Minor allele frequency- T:0.00EU EA WA 400
rs116142231,2
H55696656(+) GAGTCA/CCCAAT 1 -- ng314Minor allele frequency- C:0.00EU EA WA 416
rs7336291,2
C,F,H,O55692711(+) AGACTT/CTCCTG 1 -- int18Minor allele frequency- C:0.09NA MN EU EA WA 2080
rs171193301,2
C,F,H55695506(+) TTGTAG/AGGCAC 1 -- int115Minor allele frequency- A:0.09NA EU EA WA 1364
rs21226941,2
C,F,H55694600(-) TGAGAG/AGGATT 1 -- int14Minor allele frequency- A:0.01EU EA WA 400
rs171193271,2
C,F,H55695007(+) CCGATG/ATAATT 1 -- int116Minor allele frequency- A:0.09NA EU EA WA 1466
rs22707341,2
F,H55692591(-) ACTGCC/TCGTCA 1 -- int15Minor allele frequency- T:0.01EA EU WA 1914
rs116098251,2
A,C55690465(+) GAGAGG/CAAAGA 1 -- int1 trp33Minor allele frequency- C:0.01NA 130
--
rs614157061,2
--55697840(+) GTAATC/TTCAGC 1 -- ng310--------
About this table

HapMap Linkage Disequilibrium images for TAC3 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 162330   disorders: 146110  

4 Novoseek disease relationships for TAC3 gene

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
preeclampsia 54.67 27 16709596 (4), 17318561 (2), 17480147 (2), 10866201 (2) (see all 11)
hypertrophy 28.46 4 14764001 (1), 10095095 (1), 19094085 (1), 18614256 (1)
inflammation 1.20 2 11049735 (1), 7684358 (1)
edema 0.00 1 11049735 (1)
About this table

Human Gene Mutation Database: TAC3
Human Genome Epidemiology Navigator: TAC3 (3 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/130 PubMed articles for TAC3 gene (see all 130 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 6866 HGNC: 11521 AceView: MYO1AandTAC3 Ensembl:ENSG00000166863 euGenes: HUgn6866
ECgene: TAC3 H-InvDB: TAC3
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

  --
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for TAC3:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
  Invitrogen Antibodies  Invitrogen Assays
  Invitrogen Clones  Invitrogen Q-PCR Products
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 Millipore Preclinical / Clinical Development Services
 Millipore Immunoassay Services
 Millipore Target Screening & Profiling Services


 Predesigned and custom siRNAs for TAC3 Antibodies for TAC3
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for TAC3 Browse small molecules at Sigma-Aldrich
 "Your Favorite Gene" Pathwaysfeedback


  
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 Recombinant Proteins
(Neurokinin B )
 Antibodies (Neurokinin B )
 Search OriGene for TAC3
 Tocris compounds for TAC3




 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for TAC3

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