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TAAR6 Gene

protein-coding GIFtS: 53

GC06P132934

trace amine associated receptor 6
(Previous name: trace amine receptor 4 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: TRAR4)

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
OTTHUMP00000017222 ^²
RP11-295F4.3 ^²
SCZD5 ^²
TA4 ^¹, ², ³
TAR4 ^³
TRAR4 ^², ³, ⁵
TaR-4 ^³

Descriptions
Trace amine receptor 4 ^¹, ², ³
trace amine associated receptor 6 ^²

External Ids
HGNC: 20978¹
Entrez Gene: 319100²
UniProtKB: Q96RI8³
Ensembl: ENSG00000146383⁷

Search outside databases for aliases for TAAR6 gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for TAAR6:

The TAAR6 (TRAR4) gene belongs to the trace amine receptor family. Trace amines are endogenous

amine compounds that are chemically similar to classic biogenic amines like dopamine,

norepinephrine, serotonin, and histamine. Trace amines were thought to be 'false

transmitters' that displace classic biogenic amines from their storage and act on

transporters in a fashion similar to the amphetamines, but the identification of brain receptors

specific to trace amines indicates that they also have effects of their own (Duan et al., 2004

[PubMed 15329799]).[supplied by OMIM]

UniProtKB/Swiss-Prot: TAAR6_HUMAN, Q96RI8

Function: Orphan receptor. Could be a receptor for trace amines. Trace amines are biogenic amines

present in very low levels in mammalian tissues. Although some trace amines have clearly defined

roles as neurotransmitters in invertebrates, the extent to which they function as true

neurotransmitters in vertebrates has remained speculative. Trace amines are likely to be involved

in a variety of physiological functions that have yet to be fully understood

Gene Wiki entry for TAAR6

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the TAAR6 gene

Entrez Gene cytogenetic band: 6q23.2 Ensembl cytogenetic band: 6q23.2 HGNC cytogenetic band: 6q23.1

TAAR6 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure

GeneLoc location for GC06P132934: (about GC identifiers)

Start:	132,933,154 bp from pter
End:	132,934,191 bp from pter
Size:	1,038 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000006.10 NT_025741.14

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: TAAR6_HUMAN, Q96RI8 (See protein sequence)

Recommended Name: Trace amine-associated receptor 6

Size: 345 amino acids; 38451 Da

Subcellular location: Cell membrane; Multi-pass membrane protein

Secondary accessions: Q5VUQ4

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_778237.1

ENSEMBL proteins:

ENSP00000275198

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (TRAR4)
	Human Recombinant Proteins from Abnova (TAAR6)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005886	plasma membrane	IEA	--
GO:0016021	integral to membrane	IEA	--

About this table

Antibodies for TAAR6:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Browse Antibodies at Sigma-Aldrich
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (TRAR4), each with their Abpromise^SM
	Browse Abnova for Monoclonal and Polyclonal Antibodies
	Novus Biologicals Antibodies for TAAR6

Assays for TAAR6:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

Graphical View of Domain Structure for InterPro Entry Q96RI8

ProtoNet protein and cluster: Q96RI8

UniProtKB/Swiss-Prot: TAAR6_HUMAN, Q96RI8

Similarity: Belongs to the G-protein coupled receptor 1 family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (TAAR6)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (TAAR6)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_175067

Applied Biosystems Silencer® siRNAs for TAAR6

Sigma-Aldrich siRNA and siRNA Panels for TAAR6

Sigma-Aldrich shRNA Panels and shRNA for TAAR6

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for TAAR6
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_175067
Myc/DDK tagged cDNA clone in CMV expression vector: NM_175067
untagged cDNA clone in CMV expression vector: NM_175067

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_175067

UniProtKB/Swiss-Prot: TAAR6_HUMAN, Q96RI8

Function: Orphan receptor. Could be a receptor for trace amines. Trace amines are biogenic amines

present in very low levels in mammalian tissues. Although some trace amines have clearly defined

roles as neurotransmitters in invertebrates, the extent to which they function as true

neurotransmitters in vertebrates has remained speculative. Trace amines are likely to be involved

in a variety of physiological functions that have yet to be fully understood

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0004872	receptor activity	IEA	--
GO:0004930	G-protein coupled receptor activity	TAS	15718104

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

5/12 Interacting proteins for TAAR6 (ENSP00000275198³) via UniProtKB, MINT, and/or STRING (see all 12 )

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
TAAR1	ENSP00000275216³	STRING (score=.905)
TAAR2	ENSP00000356908³	STRING (score=.905)
TAAR5	ENSP00000258034³	STRING (score=.904)
TAAR8	ENSP00000275200³	STRING (score=.902)
RGS4	ENSP00000356885³	STRING (score=.807)

About this table

2 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007165	signal transduction	IEA	--
GO:0007186	G-protein coupled receptor protein signaling pathway	TAS	15718104

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for TAAR6

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (TAAR6)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (TAAR6)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_175067

Sigma-Aldrich siRNA and siRNA Panels for TAAR6

Sigma-Aldrich shRNA Panels and shRNA for TAAR6

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_175067

REFSEQ mRNAs for TAAR6 gene:

NM_175067.1

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_175067

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_175067
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_175067
                                 untagged cDNA clone in CMV expression vector: NM_175067

Additional cDNA sequence:

AY183470.1 BC069157.1

1 DOTS entry:

DT.99947180

3 AceView cDNA sequences:

BC069157 NM_175067 AY183470

highest scoring ESTs for TAAR6:

AY183470 BC069157 NM_175067 CO924218 CO924282 DT216998

Unigene Cluster for TAAR6:

Trace amine associated receptor 6

Hs.434196 [show with all ESTs]

Unigene Representative Sequence: AY183470

GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:

ENST00000275198

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

TAAR6 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for TAAR6

¹ Data from GNF BioGPS
About these images

About these images

CGAP SAGE TAG: AATTTGTTTT

SOURCE GeneReport for Unigene cluster: Hs.434196
UniProtKB/Swiss-Prot: TAAR6_HUMAN, Q96RI8
Tissue specificity: Expressed at low abundance in various brain tissues, as well as in fetal liver,
but not in the cerebellum or placenta. In the brain, comparable levels of expression in basal
ganglia, frontal cortex, substantia nigra, amygdala and hippocampus, highest expression in
hippocampus and lowest expression in basal ganglia

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for TAAR6 gene from 4 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
chimpanzee (Pan troglodytes)	TAAR6¹	--	trace amine associated receptor 6	98.65(n) 97.68(a)	472127 NM_001009125.1 NP_001009125.1
cow (Bos taurus)	LOC616737¹	--	similar to trace amine associated receptor 6	85.83(n) 86.51(a)	616737 XM_868840.2 XP_873933.2
rat (Rattus norvegicus)	Taar6¹	--	trace amine-associated receptor 6	83.19(n) 87.54(a)	294124 NM_175584.1 NP_783174.1
mouse (Mus musculus)	Taar6^{1, 5}	10⁵	trace amine-associated receptor 6^{1, 5}	83.96(n)¹ 88.7(a)¹	215855¹ NM_001010828.1¹ NP_001010828.1¹ AY702330⁵ BC148624⁵

About this table Species with no ortholog for TAAR6

ENSEMBL Gene Tree for TAAR6

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for TAAR6 gene

TAAR8²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/49 NCBI SNPs in TAAR6 are shown (see all 49 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 74)

AB	SNP ID	Valid	Chr 6 pos	Sequence	Recs	AA Chg	Type	More	Recs	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--			--
	rs9389007^1,2	A,C,F,H	132932034(+)	`GTTGGG/AAACAT`	1	--	ng5¹		7	EU EA WA NA	558
	rs6907909^1,2	A,C,F,H	132932441(+)	`TTACTA/GTTTAC`	1	--	ng5¹		8	EA NA EU WA	628
	rs11154685^1,2	A,C,F,H	132934633(+)	`ATTTTA/GCCACA`	1	--	ng3¹		8	EU EA WA	838
	rs7772821^1,2	A,C,F,H	132934199(+)	`AGTTGT/GATAGA`	1	--	ng3¹		12	EU EA WA NA	1052
--	rs17061399^1,2	C,F,H	132933263(+)	`GTACAT/CAGTGT`	1	T/I	mis¹ ese³		8	EU EA WA	826
	rs9373026^1,2	C,F,H	132932878(+)	`TTTATC/GAAATT`	1	--	ng5¹		11	NA EU EA WA	958
	rs17061449^1,2	C,F,H	132932914(+)	`AAACAA/CTCTCC`	1	--	ng5¹		7	NA EU EA WA	556
--	rs17061401^1,2	C,F,H	132933646(+)	`ACAGCG/AGTGCT`	1	S/G	mis¹ ese³		8	EU EA WA	826
--	rs17061419^1,2	C,F,H	132934129(+)	`TTATTG/ATAACT`	1	I/V	mis¹		4	EU EA WA	406
	rs17061409^1,2	C,F,H	132933836(+)	`ACAGGC/TGAAAA`	1	A/V	mis¹ ese³		8	EU EA WA	826

About this table

HapMap Linkage Disequilibrium images for TAAR6 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 608923

Genetic Association Database: TAAR6
Human Genome Epidemiology Navigator: TAAR6 (9 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10/22 PubMed articles for TAAR6 gene (see all 22 ):

Trace amines: identification of a family of mammalian G protein- coupled receptors. (PubMed id 11459929)^{2, 3, 4} Borowsky B.... Gerald C. (2001)
Polymorphisms in the trace amine receptor 4 (TRAR4) gene on chromosome 6q23.2 are associated with susceptibility to schizophrenia. (PubMed id 15329799)^{1, 3, 4} Duan J.... Gejman P.V. (2004)
Failure to find association between TRAR4 and schizophrenia in the Chinese Han population. (PubMed id 16075187)^{3, 6} Duan S....He L. (2006)
Trace amine-associated receptors form structurally and functionally distinct subfamilies of novel G protein-coupled receptors. (PubMed id 15718104)^{2, 3} Lindemann L....Hoener M.C. (2005)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)^{3, 4} Mungall A.J.... Beck S. (2003)
Association of the trace amine associated receptor 6 (TAAR6) gene with schizophrenia and bipolar disorder in a Korean case control sample. (PubMed id 17097106)^{1, 3} Pae C.U....Lerer B. (2008)
No support for an association with TAAR6 and schizophrenia in a linked population of European ancestry. (PubMed id 18628684)^{1, 3} Ludewick H.P....Wildenauer D.B. (2008)
A region of 35 kb containing the trace amine associate receptor 6 (TAAR6) gene is associated with schizophrenia in the Irish study of high-density schizophrenia families. (PubMed id 17505468)^{1, 3} Vladimirov V....Riley B.P. (2007)
The trace amine receptor 4 gene is not associated with schizophrenia in a sample linked to chromosome 6q23. (PubMed id 16189505)^{1, 3} Amann D....Lerer B. (2006)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 319100	HGNC: 20978	AceView: TRAR4	Ensembl:ENSG00000146383	euGenes: HUgn319100
ECgene: TAAR6	H-InvDB: TAAR6

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for TAAR6
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for TAAR6:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for TAAR6-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for TAAR6		Browse antibodies at Sigma-Aldrich
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for TAAR6		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

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	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
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	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
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Antibodies for TAAR6

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TAAR6 Gene

protein-coding GIFtS: 53

Aliases &
Descriptions
for TAAR6

Summaries
for TAAR6

Genomic Location
for TAAR6

Proteins
for TAAR6

Protein Domains/
Families
for TAAR6

Gene Function
for TAAR6

Pathways & Interactions
for TAAR6

Drugs & Compounds
for TAAR6

Transcripts
for TAAR6

Expression
for TAAR6

Orthologs
for TAAR6

Paralogs
for TAAR6

SNPs/Variants
for TAAR6

Disorders & Mutations
for TAAR6

Medical News
for TAAR6

Publications
for TAAR6

Search for TAAR6

Genome Databases showing TAAR6

Other Databases showing TAAR6

Specialized Databases showing TAAR6

Licensable Technologies
for TAAR6

Services
for TAAR6

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

TAAR6 Gene

protein-coding GIFtS: 53

Aliases & Descriptionsfor TAAR6

Summariesfor TAAR6

Genomic Locationfor TAAR6

Proteinsfor TAAR6

Protein Domains/Familiesfor TAAR6

Gene Functionfor TAAR6

Pathways & Interactionsfor TAAR6

Drugs & Compoundsfor TAAR6

Transcriptsfor TAAR6

Expression for TAAR6

Orthologsfor TAAR6

Paralogsfor TAAR6

SNPs/Variantsfor TAAR6

Disorders & Mutationsfor TAAR6

Medical Newsfor TAAR6

Publicationsfor TAAR6

Search for TAAR6

Genome Databases showing TAAR6

Other Databases showing TAAR6

Specialized Databases showing TAAR6

Licensable Technologiesfor TAAR6

Servicesfor TAAR6

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for TAAR6

Summaries
for TAAR6

Genomic Location
for TAAR6

Proteins
for TAAR6

Protein Domains/
Families
for TAAR6

Gene Function
for TAAR6

Pathways & Interactions
for TAAR6

Drugs & Compounds
for TAAR6

Transcripts
for TAAR6

Expression
for TAAR6

Orthologs
for TAAR6

Paralogs
for TAAR6

SNPs/Variants
for TAAR6

Disorders & Mutations
for TAAR6

Medical News
for TAAR6

Publications
for TAAR6

Licensable Technologies
for TAAR6

Services
for TAAR6