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SZRD1 Gene

protein-coding   GIFtS: 37
GCID: GC01P016681

SUZ RNA Binding Domain Containing 1

(Previous name: chromosome 1 open reading frame 144)
(Previous symbol: C1orf144)
  Search for SZRD1
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
SUZ RNA Binding Domain Containing 11 2     Putative MAPK Activating Protein PM20,PM212
C1orf1441 2 3     SUZ Domain-Containing Protein 12
Putative MAPK-Activating Protein PM18/PM20/PM222 3     UPF0485 Protein C1orf1442
Chromosome 1 Open Reading Frame 1441     

External Ids:    HGNC: 302321   Entrez Gene: 260992   Ensembl: ENSG000000550707   UniProtKB: Q7Z4223   
ORGUL members:         

Export aliases for SZRD1 gene to outside databases


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SZRD1 Gene:
SZRD1 (SUZ RNA binding domain containing 1) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000001.10  NC_018912.2  NT_032977.10  
Regulatory elements:
   Search for regulatory transcription factor binding sites for SZRD1
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSZRD1 promoter sequence
   Search Chromatin IP Primers for SZRD1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SZRD1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p36.13   Ensembl cytogenetic band:  1p36.13   HGNC cytogenetic band: 1p36.13

SZRD1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SZRD1 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P016681:  view genomic region     (about GC identifiers)

Start:
16,679,070 bp from pter      End:
16,724,640 bp from pter
Size:
45,571 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: SZRD1_HUMAN, Q7Z422 (See protein sequence)
Recommended Name: SUZ domain-containing protein 1  
Size: 152 amino acids; 16997 Da
Sequence caution: Sequence=CAB43245.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Sequence=CAC82500.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Secondary accessions: A8MXJ2 Q7Z424 Q8IVM2 Q8TBV3 Q9Y403
Alternative splicing: 4 isoforms:  Q7Z422-1   Q7Z422-2   Q7Z422-3   Q7Z422-4   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for SZRD1: NX_Q7Z422

Explore proteomics data for SZRD1 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See SZRD1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_001108072.1  NP_001258798.1  

    ENSEMBL proteins: 
     ENSP00000383866   ENSP00000419589   ENSP00000383867   ENSP00000420441   ENSP00000418012  
     ENSP00000364740  

    SZRD1 Human Recombinant Protein Products:

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    Search eBioscience for ELISAs for SZRD1 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    2 InterPro protein domains:
     IPR024642 SUZ-C
     IPR024771 SUZ

    Graphical View of Domain Structure for InterPro Entry Q7Z422

    ProtoNet protein and cluster: Q7Z422

    UniProtKB/Swiss-Prot: SZRD1_HUMAN, Q7Z422
    Similarity: Belongs to the SZRD1 family
    Similarity: Contains 1 SUZ domain


    Find genes that share domains with SZRD1           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Phenotypes:
         2 GenomeRNAi human phenotypes for SZRD1:
     G0/1 arrest  Increased G1 DNA content 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for SZRD1
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       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for SZRD1
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for SZRD1

    miRNA
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    miRTarBase miRNAs that target SZRD1:
    hsa-mir-7-5p (MIRT025937), hsa-mir-340-5p (MIRT019624), hsa-mir-328-3p (MIRT043784), hsa-let-7b-5p (MIRT051894), hsa-mir-16-5p (MIRT032000)

    Block miRNA regulation of human, mouse, rat SZRD1 using miScript Target Protectors
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    SwitchGear 3'UTR luciferase reporter plasmidSZRD1 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat SZRD1

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    In Situ Assay
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SZRD1
    Interactions:

        Search GeneGlobe Interaction Network for SZRD1

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for SZRD1 (ENSP000003838664) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ELAVL1ENSP000003852694STRING: ENSP00000385269
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for SZRD1



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for SZRD1 gene (2 alternative transcripts): 
    NM_001114600.2  NM_001271869.1  

    Unigene Cluster for SZRD1:

    SUZ RNA binding domain containing 1
    Hs.252967  [show with all ESTs]
    Unigene Representative Sequence: NR_073501
    11 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000475078 ENST00000401088(uc010ocb.1 uc001aym.4 uc001ayi.4 uc001ayk.4)
    ENST00000471507 ENST00000401089 ENST00000486763 ENST00000476423 ENST00000475554
    ENST00000472351 ENST00000492354 ENST00000472461 ENST00000375590
    miRNA
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    Block miRNA regulation of human, mouse, rat SZRD1 using miScript Target Protectors
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    SwitchGear 3'UTR luciferase reporter plasmidSZRD1 3' UTR sequence
    Inhib. RNA
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    OriGene RNAi products in human, mouse, rat for SZRD1
    Predesigned siRNA for gene silencing in human, mouse, rat SZRD1
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    Primer
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    OriGene qPCR primer pairs and template standards for SZRD1
    OriGene qSTAR qPCR primer pairs in human, mouse for SZRD1
    Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat SZRD1
      QuantiTect SYBR Green Assays in human, mouse, rat SZRD1
      QuantiFast Probe-based Assays in human, mouse, rat SZRD1

    Additional mRNA sequence: 

    AB097042.1 AB097043.1 AB097044.1 AB097045.1 AB097046.1 AJ295987.1 AK098272.1 AK297926.1 
    AK298576.1 AK308787.1 AK316205.1 AL050028.1 AL832937.1 BC010631.1 BC023988.1 BC065538.1 
    BX640985.1 NR_073500.1 NR_073501.1 NR_073502.1 NR_073503.1 

    Selected DOTS entries (see all 29):

    DT.100822801  DT.100822795  DT.97855332  DT.75137900  DT.97855335  DT.100822786  DT.100822805  DT.100822807 
    DT.100822794  DT.121345400  DT.100822787  DT.121345446  DT.95180812  DT.121345461  DT.100822803  DT.101975885 
    DT.121345502  DT.121345545  DT.92460136  DT.121345398  DT.121345432  DT.121345452  DT.121345474  DT.92460133 

    Selected AceView cDNA sequences (see all 597):

    BF593668 BU684929 BM552965 CR598986 BM727634 AA429871 BM967006 BM727262 
    BI768187 AW014302 CF125770 AB097045 BE673357 AI032055 BU930864 AB097046 
    AI262211 BM456942 AI460109 BP367244 BM807120 BX324948 AW591017 AW779299 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for SZRD1 (see all 8)    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c · 8d
    SP1:              -     -     -                                       
    SP2:        -           -     -                                       
    SP3:        -     -     -                                             
    SP4:        -           -     -                                       
    SP5:        -     -           -                                       


    ECgene alternative splicing isoforms for SZRD1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    SZRD1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    SZRD1 Expression
    About this image


    SZRD1 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 6) fully expand
     
     Bone (Muscoskeletal System)
             Bone Marrow
     
     Heart (Cardiovascular System)
     
     Ovary (Reproductive System)
     
     Esophagus (Gastrointestinal Tract)
     
     Placenta (Extraembryonic Tissues)
    SZRD1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    SZRD1 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.252967
        Custom PCR Arrays for SZRD1
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SZRD1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for SZRD1 gene from Selected species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Szrd11 , 5 DNA segment, Chr 4, ERATO Doi 22, expressed5
    SUZ RNA binding domain containing 11
    94.96(n)1
    97.37(a)1
      4 (73.38 cM)5
    2134911  NM_001025608.21  NP_001020779.11 
     1411130015 
    chicken
    (Gallus gallus)
    Aves C21H1ORF1441 chromosome 21 open reading frame, human C1orf144 85.96(n)
    93.42(a)
      419462  NM_001030880.1  NP_001026051.1 
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.36492 Xenopus laevis transcribed sequence with moderate similarity more 80.68(n)    CA789767.1 
    zebrafish
    (Danio rerio)
    Actinopterygii wufb15h052 Transcribed sequence with weak similarity to protein more 81.24(n)    CB355995.1 


    ENSEMBL Gene Tree for SZRD1 (if available)
    TreeFam Gene Tree for SZRD1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for SZRD1 gene

    Find genes that share paralogs with SZRD1           About GenesLikeMe


    2 Pseudogenes.org Pseudogenes for SZRD1
    PGOHUM00000258632 PGOHUM00000243695


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for SZRD1 (see all 678)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1927700501,2
    --16691628(+) AAAGAC/TTAATG 6 -- us2k10--------
    rs1501586741,2
    --16691753(+) GTCAGC/TAAGAA 6 -- us2k10--------
    rs1149880181,2
    F--16691769(+) ACACAT/CGGTGT 6 -- us2k11Minor allele frequency- C:0.05WA 118
    rs756189711,2
    C--16691844(+) AGTGCA/GATGGC 6 -- us2k10--------
    rs1386680551,2
    C--16691850(+) ATGGCA/GCAATC 6 -- us2k10--------
    rs118016311,2
    C,F,H--16691942(+) tgccaC/Acacat 6 -- us2k11Minor allele frequency- A:0.50WA 2
    rs120648731,2
    C,A--16692050(+) TCCCAC/AAGTGT 6 -- us2k12Minor allele frequency- A:0.25NA 4
    rs1380036861,2
    --16692170(+) CTCCCA/TTAATG 6 -- us2k10--------
    rs1434805851,2
    C--16692267(+) TACTTC/TTGAAG 6 -- us2k10--------
    rs1848022791,2
    --16692301(+) TGGGGA/GACTGA 6 -- us2k10--------

    HapMap Linkage Disequilibrium report for SZRD1 (16679070 - 16724640 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for SZRD1: --
    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing SZRD1
    DNA2.0 Custom Variant and Variant Library Synthesis for SZRD1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for SZRD1 gene, integrated from 10 sources (see all 17):
    (articles sorted by number of sources associating them with SZRD1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways. (PubMed id 12761501)1, 2, 3 Matsuda A....Sugano S. (Oncogene 2003)
    2. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    3. A high-throughput approach for measuring temporal changes in the interactome. (PubMed id 22863883)1 Kristensen A.R....Foster L.J. (Nat. Methods 2012)
    4. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (Sci. Signal. 2011)
    5. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)
    6. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (Sci. Signal. 2010)
    7. Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. (PubMed id 19413330)2 Gauci S....Mohammed S. (Anal. Chem. 2009)
    8. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332)2 Mayya V.... Han D.K. (Sci. Signal. 2009)
    9. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (EMBO J. 2009)
    10. A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (Proc. Natl. Acad. Sci. U.S.A. 2008)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 26099 HGNC: 30232 AceView: DKFZp566C0424 Ensembl:ENSG00000055070 euGenes: HUgn26099
    ECgene: SZRD1 H-InvDB: SZRD1

    (According to HUGE)
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for SZRD1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for SZRD1 gene:
    Search GeneIP for patents involving SZRD1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

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