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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SYT8 Gene

protein-coding   GIFtS: 48
GCID: GC11P001849

synaptotagmin VIII

 Explore 2 diseases affiliated with
SYT8 via our new
 Human Malady Compendium 
Biological research products
for SYT8
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Synaptotagmin VIII1 2 3
DKFZp434K03221
Synaptotagmin 82
Synaptotagmin-81
SytVIII3
SytVIII3

External Ids:    HGNC: 192641   Entrez Gene: 900192   Ensembl: ENSG000001490437   OMIM: 6077195   UniProtKB: Q8NBV83   

Export aliases for SYT8 gene to outside databases

Previous GC identifers: GC11M001967 GC11P001813 GC11P001818 GC11P001820 GC11P001811 GC11P001646


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for SYT8:
Synaptotagmins, such as SYT8, share a common domain structure that includes a transmembrane domain and a cytoplasmic
region composed of 2 C2 domains. Some synaptotagmins are involved in synaptic membrane fusion, while others have a
more general function in endocytosis. For further information on synaptotagmins, see MIM 185605.(supplied by OMIM, May
2003)

UniProtKB/Swiss-Prot: SYT8_HUMAN, Q8NBV8
Function: Isoform 4 may play a role in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues.
Mediates Ca(2+)-regulation of exocytosis acrosomal reaction in sperm. May mediate Ca(2+)-regulation of exocytosis in
insulin secreted cells (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000011.9  NC_018922.1  NT_009237.18  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SYT8 gene promoter:
         COUP-TF1   COUP   Lmo2   HNF-4alpha2   AP-4   Tal-1beta   Roaz   HNF-4alpha1   E47   COUP-TF   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): SYT8 promoter sequence
   Search SABiosciences Chromatin IP Primers for SYT8

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SYT8


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11p15.5   Ensembl cytogenetic band:  11p15.5   HGNC cytogenetic band: 11p15.5

SYT8 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SYT8 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P001849:  view genomic region     (about GC identifiers)

Start:
1,848,709 bp from pter      End:
1,858,751 bp from pter
Size:
10,043 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: SYT8_HUMAN, Q8NBV8 (See protein sequence)
Recommended Name: Synaptotagmin-8  
Size: 401 amino acids; 44138 Da
Subunit: Homodimer or homooligomer. Homodimerization and homooligomerization do not depend on Ca(2+). Interacts with
SYNCRIP isoform 2 C-terminus. Binds inositol 1,3,4,5-tetrakisphosphate (IP4). Binds to AP2 in a Ca(2+)-independent
manner. Interacts with STX1A, STX1B and STX2; the interaction is Ca(2+)-dependent (By similarity)
Subcellular location: Cell membrane; Single-pass type III membrane protein (By similarity). Cytoplasmic vesicle,
secretory vesicle, acrosome (By similarity)
Sequence caution: Sequence=AAQ57209.1; Type=Miscellaneous discrepancy; Note=May be due to an intron retention;
Sequence=CAB70885.2; Type=Miscellaneous discrepancy; Note=The sequence differs from that shown because it is a
pre-mRNA;
Secondary accessions: A6NFJ4 Q9NSV9
Alternative splicing: 2 isoforms:  Q8NBV8-4   Q8NBV8-1   (Variant in position: 143:R->Q (in dbSNP:rs907608). Variant in position: 152:T->M (in dbSNP:rs907609))

Explore the universe of human proteins at neXtProt for SYT8: NX_Q8NBV8

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q8NBV8

  • SYT8 Protein expression data from MOPED and PaxDb:    About this image 
    SYT8 Protein Expression
    REFSEQ proteins: NP_612634.3  
    ENSEMBL proteins: 
     ENSP00000392469   ENSP00000387678   ENSP00000371394   ENSP00000371406   ENSP00000343691  
     ENSP00000405850   ENSP00000443325   ENSP00000414626  

    Human Recombinant Protein Products for SYT8: 
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    Uscn Proteins for SYT8

    Gene Ontology (GO): 5/7 cellular component terms (GO ID links to tree view) (see all 7):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001669acrosomal vesicle IEA--
    GO:0005737cytoplasm ----
    GO:0005886plasma membrane IEA--
    GO:0008021synaptic vesicle IEA--
    GO:0016020membrane ----

    SYT8 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    SYT8 for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR008973 C2_Ca/lipid-bd_dom_CaLB
     IPR001565 Synaptotagmin
     IPR018029 C2_membr_targeting
     IPR000008 C2_Ca-dep

    Graphical View of Domain Structure for InterPro Entry Q8NBV8

    ProtoNet protein and cluster: Q8NBV8

    UniProtKB/Swiss-Prot: SYT8_HUMAN, Q8NBV8
    Domain: The first C2 domain/C2A does not mediate Ca(2+)-dependent phospholipid binding (By similarity)
    Domain: The second C2 domain/C2B is responsible for SYNCRIP and inositol 1,3,4,5-tetrakisphosphate (IP4)-binding (By
    similarity)
    Similarity: Belongs to the synaptotagmin family
    Similarity: Contains 2 C2 domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: SYT8_HUMAN, Q8NBV8
    Function: Isoform 4 may play a role in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues.
    Mediates Ca(2+)-regulation of exocytosis acrosomal reaction in sperm. May mediate Ca(2+)-regulation of exocytosis in
    insulin secreted cells (By similarity)

         Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005215transporter activity IEA--
    GO:0048306calcium-dependent protein binding IEA--
         
    SYT8 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for SYT8:
     Cell cycle / mitosis defect 

    Animal Models:
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for SYT8 

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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SYT8


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SYT8

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for SYT8 (Q8NBV83 ENSP000003713944) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SYNCRIPO605063, ENSP000003586354I2D: score=2 STRING: ENSP00000358635
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007340acrosome reaction IEA--

    SYT8 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for SYT8
    Search CenterWatch for drugs/clinical trials and news about SYT8 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for SYT8 gene: 
    NM_138567.3  

    Unigene Cluster for SYT8:

    Synaptotagmin VIII
    Hs.161031  [show with all ESTs]
    Unigene Representative Sequence: BM907017
    16 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000430303 ENST00000417052 ENST00000479276 ENST00000490707 ENST00000479089(uc001lud.2)
    ENST00000381968(uc001lue.1) ENST00000464897 ENST00000475245 ENST00000381978
    ENST00000341958 ENST00000424556 ENST00000482118(uc009ydb.2) ENST00000483280
    ENST00000494431 ENST00000535046 ENST00000436964(uc010qxb.1)

    miRNA
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    Additional cDNA sequence: 

    AK293395.1 BC038591.1 BC144657.1 BC144659.1 BC144660.1 BC144661.1 

    8 DOTS entries:

    DT.97782207  DT.100752449  DT.40111962  DT.95283346  DT.100647944  DT.102822049  DT.100837849  DT.120723716 

    24/33 AceView cDNA sequences (see all 33):

    CR619379 AK131292 NM_138567 AK075202 BX399734 BX282124 CR622425 CR601912 
    CR596759 BU608388 BF847943 BX378323 BX396540 BX396061 AL137708 AI814253 
    BX396060 AY353087 BV194019 BC038591 BM709614 BX365067 BU683204 CB321892 

    GeneLoc Exon Structure

    5/10 Alternative Splicing Database (ASD) splice patterns (SP) for SYT8 (see all 10)    About this scheme

    ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7a · 7b · 7c · 7d ^ 8a · 8b ^ 9 ^ 10
    SP1:                                                              -     -           -     -                       -                           
    SP2:                                -     -                       -     -           -     -                                                   
    SP3:                                      -                       -     -           -     -                                                   
    SP4:                                      -                       -     -                                                                     
    SP5:                                -     -                       -     -                                                                     


    ECgene alternative splicing isoforms for SYT8

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SYT8 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CCTCTGTCTC
    SYT8 Expression
    About this image
    See SYT8 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SYT8

    SOURCE GeneReport for Unigene cluster: Hs.161031
        SABiosciences Custom PCR Arrays for SYT8

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for SYT8 gene from 4/12 species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves SYT86
    Uncharacterized protein
    43(a)
    1 ↔ 1
    5(15210048-15213984)
    lizard
    (Anolis carolinensis)
    Reptilia SYT86
    --
    48(a)
    1 ↔ 1
    1(70735529-70748286)
    zebrafish
    (Danio rerio)
    Actinopterygii syt86
    synaptotagmin VIII
    43(a)
    1 ↔ 1
    25(32486949-32500006)
    worm
    (Caenorhabditis elegans)
    Secernentea snt-66
    snt-26
    SyNapTotagmin family member (snt-2)
    25(a)
    25(a)
    possible ortholog
    1 ↔ 1
    II(745469-750171)
    III(786694-793682)


    ENSEMBL Gene Tree for SYT8 (if available)
    TreeFam Gene Tree for SYT8 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for SYT8 gene
    SYT152  SYT42  SYT52  SYT92  SYT32  SYT102  SYT62  SYT172  
    SYT112  SYT122  SYT72  SYT22  SYT12  
    7 SIMAP similar genes for SYT8 using alignment to 8 protein entries:     SYT8_HUMAN (see all proteins):
    SYT2    SYT1    SYT5    SYT10    SYT11    SYT7
    SYT6

    SYT8 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/134 NCBI SNPs in SYT8 are shown (see all 134    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs734109151,2
    C,F--1853792(+) GGTCTC/TCAGGG 1 -- us2k13Minor allele frequency- T:0.43WA CSA 122
    rs1925397751,2
    --1853844(+) GCGGAC/TGGCGC 1 -- us2k10--------
    rs1488510241,2
    --1854039(+) TGGCCC/TGGGAG 1 -- us2k10--------
    rs71202821,2
    C,A--1854058(+) GCCGGC/TCNNNN 1 -- us2k13Minor allele frequency- T:0.12NA EA 242
    rs79420441,2
    C,F,A,H--1854087(+) CTCTCG/CCCGCC 1 -- us2k111Minor allele frequency- C:0.35NA WA CSA EA 378
    rs618671301,2
    --1854093(+) CCGCCC/GGGCCC 1 -- us2k13Minor allele frequency- G:0.12NA EA 242
    rs1853265031,2
    --1854122(+) AGGAGG/TGGGGA 1 -- us2k10--------
    rs118282411,2
    C,F,H--1854128(+) GGGGAC/TGCCAG 1 -- us2k12Minor allele frequency- T:0.05NA WA 122
    rs618671311,2
    C--1854356(+) TCTGGC/TCGGCA 1 -- us2k13Minor allele frequency- T:0.11NA EA 242
    rs118199181,2
    C,F,H--1854391(+) GACCCA/GGCCCA 1 -- us2k16Minor allele frequency- G:0.01NS EA NA WA 532

    HapMap Linkage Disequilibrium report for SYT8 (1848709 - 1858751 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 4 variations for SYT8
         4 CNVs: 29889 29892 29893 29890

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    SYT8 for disorders           About GeneDecksing

    OMIM gene information: 607719    OMIM disorders: --

    2 diseases for SYT8:    About MalaCards
    pharyngitis    neuronitis

    Human Genome Epidemiology (HuGE) Navigator: SYT8 (4 documents)

    Export disorders for SYT8 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SYT8 gene, integrated from 9 sources (see all 11):
    (articles sorted by number of sources associating them with SYT8)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    2. Ca(2+)-dependent and -independent activities of neural and non-neural synaptotagmins. (PubMed id 7791877)1, 3 Li C....Sudhof T.C. (1995)
    3. Mapping of INS promoter interactions reveals its role in long-range regulation of SYT8 transcription. (PubMed id 21336277)1 Xu Z....Felsenfeld G. (2011)
    4. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
    5. Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1 Bailey S.D....Anand S. (2010)
    6. Gene-centric association signals for lipids and apoli poproteins identified via the HumanCVD BeadChip. (PubMed id 19913121)1 Talmud P.J.... . (2009)
    7. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
    8. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811)2 Taylor T.D....Sakaki Y. (2006)
    9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    10. SYNCRIP, a cytoplasmic counterpart of heterogeneous nuclear ribonucleoprotein R, interacts with ubiquitous synaptotagmin isoforms. (PubMed id 10734137)1 Mizutani A....Mikoshiba K. (2000)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 90019 HGNC: 19264 AceView: SYT8 Ensembl:ENSG00000149043 euGenes: HUgn90019
    ECgene: SYT8 H-InvDB: SYT8

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SYT8 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for SYT8 gene:
    Search GeneIP for patents involving SYT8

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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