SYT3 Gene
protein-coding GIFtS : 49
GCID: GC19 M051125
synaptotagmin III
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Aliasesfor SYT3 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Synaptotagmin III 1 2 3 SytIII2 3 Synaptotagmin-31
Export aliases for SYT3 gene to outside databases Previous GC identifers: GC19U990091 GC19M051486 GC19M055801 GC19M055817 GC19M047460
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Summariesfor SYT3 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: SYT3_HUMAN, Q9BQG1 Function : May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid bindingto the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis (By similarity) Gene Wiki entry for SYT3
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Genomic Viewsfor SYT3 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000019.9 NC_018930.1 NT_011109.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the SYT3 gene promoter: ER-alpha NF-1/L NF-1 Tal-1beta C/EBPalpha E47 RORalpha1 MZF-1 ZIC2/Zic2 Pax-4a Other transcription factors Search SABiosciences Chromatin IP Primers for SYT3 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat SYT3
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 19q13.33 Ensembl cytogenetic band: 19q13.33 HGNC cytogenetic band: 19q13.41 SYT3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19M051125: view genomic region
(about GC identifiers )
Start:
51,125,234 bp from pter
End:
51,171,651 bp from pter
Size:
46,418 bases
Orientation:
minus strand
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Proteinsfor SYT3 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: SYT3_HUMAN, Q9BQG1 (See
protein sequence )Recommended Name: Synaptotagmin-3 Size : 590 amino acids; 63304 Da
Cofactor : Binds 3 calcium ions per subunit. The ions are bound to the C2 domains (By similarity)
Subunit : Homodimer. Can also form heterodimers with SYT6 (By similarity)
Subcellular location : Cytoplasmic vesicle, secretory vesicle, synaptic vesicle membrane; Single-pass membrane protein(By similarity)
Secondary accessions : Q8N5Z1 Q8N640Explore the universe of human proteins at neXtProt for SYT3: NX_Q9BQG1 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9BQG1 SYT3 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (3 alternative transcripts):
NP_001153800.1 NP_001153801.1 NP_115674.1 ENSEMBL proteins: ENSP00000438883 ENSP00000340914 Human Recombinant Protein Products: Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view) : About this table
SYT3 for ontologies About GeneDecksing SYT3 Antibody Products: Assay Products for SYT3:
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Protein
Domains / Familiesfor SYT3 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
SYT3 for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9BQG1 ProtoNet protein and cluster: Q9BQG1
1 Blocks protein family : IPB000008 C2 domain UniProtKB/Swiss-Prot: SYT3_HUMAN, Q9BQG1 Domain : The first C2 domain mediates Ca(2+)-dependent phospholipid bindingSimilarity : Belongs to the synaptotagmin familySimilarity : Contains 2 C2 domains
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Functionfor SYT3 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: SYT3_HUMAN, Q9BQG1 Function : May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid bindingto the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis (By similarity)
Genatlas biochemistry entry for SYT3 : synaptotagmin 3,multifunctional intrinsic membrane protein of synaptic vesicles and chromaffin granules,involved in exocytosis and endocytosis Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SYT3 (see all 6 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SYT3 (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: SYT3 (NM_031913 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SYT3 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SYT3
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SYT3
Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6 ): About this table
SYT3 for ontologies About GeneDecksing Animal Models: Mouse knock-out Syt3 tm1Sud for SYT3 1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Syt3) :
SYT3 for phenotypes About GeneDecksing
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Pathways & Interactionsfor SYT3 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SYT3 STRING Interaction
Network Preview (showing 4 interactants - click image to see more details)5/8 Interacting proteins for SYT3 (Q9BQG1 3 ENSP00000340914 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 8 )About this table
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Drugs & Compoundsfor SYT3 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
SYT3 for compounds About GeneDecksing Browse Tocris compounds for SYT3 1 HMDB Compound for SYT3 About this table 3 Novoseek chemical compound relationships for SYT3 gene About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
inositol
40.3
1
10358928 (1)
phospholipid
20.2
3
9163333 (3)
calcium
16.9
2
9830048 (1)
Search CenterWatch for drugs/clinical trials and news about SYT3
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Transcriptsfor SYT3 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for SYT3 gene (3 alternative transcripts): NM_001160328.1 NM_001160329.1 NM_032298.2 Unigene Cluster for SYT3:
Synaptotagmin III Hs.515554 [show with all ESTs ] Unigene Representative Sequence: AL136594 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000544769 (uc002psv.3 uc010ycd.2 ) ENST00000338916 (uc002pst.3 )Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SYT3 (see all 6 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SYT3 (see all 3 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: SYT3 (NM_031913 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SYT3 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SYT3
Additional cDNA sequence: AL136594.1 BC028379.1 BC031067.1
5 DOTS entries : DT.40114794 DT.100021968
DT.95157972 DT.121414988 DT.92033316 24/25 AceView cDNA sequences (see all 25 ):
AA594745 AW451023 BF593902 BU176847 BM710834 BM667671 AL136594 F08666 NM_032298 BC028379 BX283781 Z41650 BF307829 BC031067 BE220745 BU726788 BI916739 BI550777 BG702285 BI912995 BM688060 CK004629 BI522420 BG704063 GeneLoc Exon Structure
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Expression for SYT3 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section SYT3 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TCTGGGGGAC
About this image SYT3 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Skeletal Muscle Extraocular Muscles Skeletal Muscle Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See SYT3 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for SYT3 SOURCE GeneReport for Unigene cluster: Hs.515554 SABiosciences Custom PCR Arrays for SYT3 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SYT3Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat SYT3 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SYT3 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SYT3 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SYT3
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Orthologsfor SYT3 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for SYT3 gene from 4/12 species (see all 12 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
lizard (Anolis carolinensis)
Reptilia
SYT36
--
70(a)
1 ↔ 1
6(79535799-79566876)
zebrafish (Danio rerio)
Actinopterygii
syt36
synaptotagmin III
64(a)
1 ↔ 1
3(30666484-30776338)
fruit fly (Drosophila melanogaster)
Insecta
Sytbeta6
Synaptotagmin beta
19(a)
possible ortholog
3L(15007795-15058077)
worm (Caenorhabditis elegans)
Secernentea
snt-66
SyNapTotagmin family member (snt-6)
31(a)
possible ortholog
II(745469-750171)
ENSEMBL Gene Tree for SYT3 (if available)TreeFam Gene Tree for SYT3 (if available)
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Paralogsfor SYT3 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for SYT3 gene SYT15 2 SYT4 2 SYT5 2 SYT8 2 SYT9 2 SYT10 2 SYT6 2 SYT17 2 SYT11 2 SYT2 2 SYT12 2 SYT7 2 SYT1 2 8 SIMAP similar genes for SYT3 using alignment to 3 protein entries: SYT3_HUMAN (see all proteins ):SYT1 SYT10 SYT2 SYT5 SYT6 SYT9 SYT7 SYT4
SYT3 for paralogs About GeneDecksing
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Genomic Variantsfor SYT3 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 19 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for SYT3 (51125234 - 51171651 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for SYT3 2 CNVs : 7212 7213
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SYT3
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Disorders
/ Diseasesfor SYT3 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
SYT3 for disorders About GeneDecksing
OMIM gene information: 600327
OMIM disorders : --3 diseases for SYT3 : About MalaCards seizures pancreatitis neuronitis Export disorders for SYT3 gene to outside databases
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Publicationsfor SYT3 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for SYT3 gene, integrated from 9 sources (see all 33 ): (articles sorted by number of sources associating them with SYT3) Utopia : connect your pdf to the dynamic world of online information
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166) 1 , 2 Wiemann S.... Poustka A. (2001) Synaptotagmin genes on mouse chromosomes 1, 7, and 10 and human chromosome 19. (PubMed id 7749232) 1 , 3 Jones J.M....Meisler M.H. (1995) The consensus coding sequences of human breast and colorectal cancers. (PubMed id 16959974) 2 Sjoeblom T.... Velculescu V.E. (2006) The LIFEdb database in 2006. (PubMed id 16381901) 1 Mehrle A....Wiemann S. (2006) From ORFeome to biology: a functional genomics pipeline. (PubMed id 15489336) 1 Wiemann S....Poustka A. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Genomic analysis of synaptotagmin genes. (PubMed id 11543631) 1 Craxton M.A. (2001) SYNCRIP, a cytoplasmic counterpart of heterogeneous nuclear ribonucleoprotein R, interacts with ubiquitous synaptotagmin isoforms. (PubMed id 10734137) 1 Mizutani A....Mikoshiba K. (2000) Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. (PubMed id 11256614) 1 Simpson J.C.... Wiemann S. (2000)
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External Searches for SYT3 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing SYT3 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing SYT3 gene
(According to HUGE )
About This Section --
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Specialized Databases showing SYT3 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for SYT3 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for SYT3 gene: Search GeneIP for patents involving SYT3 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SYT3 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for SYT3 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for SYT3 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SYT3 OriGene Protein Over-expression Lysate for SYT3 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for SYT3 OriGene 3'-UTR Clone for SYT3 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SYT3 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SYT3 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for SYT3 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for SYT3 OriGene Custom Protein Services for SYT3 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SYT3 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SYT3 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat SYT3 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat SYT3 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SYT3 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SYT3
Search Tocris compounds for SYT3
SYT3 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SYT3
Search ThermoFisher Antibodies for SYT3
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SYT3
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Aliases for SYT3
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