SYT17 Gene
protein-coding GIFtS : 48
GCID: GC16 P019179
synaptotagmin XVII
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Aliasesfor SYT17 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Synaptotagmin XVII 1 2 3 Protein B/K2 3 B/K Protein2 Synaptotagmin-171 SytXVII3 SytXVII3
Export aliases for SYT17 gene to outside databases Previous GC identifers: GC16P019088 GC16P017717
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Summariesfor SYT17 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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Genomic Viewsfor SYT17 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000016.9 NC_018927.1 NT_010393.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the SYT17 gene promoter: LHX3b/Lhx3b Pax-5 NF-kappaB LCR-F1 c-Ets-1 PPAR-gamma1 LHX3a/Lhx3a PPAR-gamma2 NF-kappaB1 ATF Other transcription factors Search SABiosciences Chromatin IP Primers for SYT17 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat SYT17
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 16p12.3 Ensembl cytogenetic band: 16p12.3 HGNC cytogenetic band: 16p12.3 SYT17 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16P019179: view genomic region
(about GC identifiers )
Start:
19,179,293 bp from pter
End:
19,279,652 bp from pter
Size:
100,360 bases
Orientation:
plus strand
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Proteinsfor SYT17 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: SYT17_HUMAN, Q9BSW7 (See
protein sequence )Recommended Name: Synaptotagmin-17 Size : 474 amino acids; 53849 Da
Subcellular location : Membrane; Peripheral membrane protein (By similarity)
1 PDB 3D structure from and Proteopedia for SYT17 :2ENP (3D)
 
Secondary accessions : O43330 Q9NZ18Explore the universe of human proteins at neXtProt for SYT17: NX_Q9BSW7 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9BSW7 SYT17 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_057608.2 ENSEMBL proteins: ENSP00000456790 ENSP00000454335 ENSP00000347538 ENSP00000456009 ENSP00000456252 ENSP00000454721 ENSP00000456879 ENSP00000456915 Human Recombinant Protein Products for SYT17: Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view) : About this table
SYT17 for ontologies About GeneDecksing SYT17 Antibody Products: Assay Products for SYT17:
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Protein
Domains / Familiesfor SYT17 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
SYT17 for domains About GeneDecksing 5 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9BSW7 ProtoNet protein and cluster: Q9BSW7
2 Blocks protein families : IPB000008 C2 domain IPB001565 Synaptotagmin signature UniProtKB/Swiss-Prot: SYT17_HUMAN, Q9BSW7 Similarity : Belongs to the synaptotagmin familySimilarity : Contains 2 C2 domains
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Functionfor SYT17 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005215 transporter activity
IEA --
SYT17 for ontologies About GeneDecksing Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SYT17 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SYT17 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: SYT17 (NM_016524 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SYT17 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SYT17
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SYT17
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Pathways & Interactionsfor SYT17 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SYT17 STRING Interaction
Network Preview (showing 5 interactants - click image to see 7)5/7 Interacting proteins for SYT17 (Q9BSW7 2 , 3 ENSP00000347538 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 7 )Interactant Interaction Details GeneCard External ID(s) CCDC85B Q15834 2 , 3 , ENSP00000311695 4 MINT-66651 I2D:
score=5 STRING: ENSP00000311695 NINL Q9Y2I6 2 , 3 , ENSP00000278886 4 MINT-67395 I2D:
score=5 STRING: ENSP00000278886 APTX Q7Z2E3 2 , 3 , ENSP00000400806 4 MINT-2873647 I2D:
score=3 STRING: ENSP00000400806 MDP1 Q86V88 2 , 3 , ENSP00000288087 4 MINT-67169 I2D:
score=1 STRING: ENSP00000288087 TSC22D4 Q9Y3Q8 2 , 3 , ENSP00000300181 4 MINT-67942 I2D:
score=5 STRING: ENSP00000300181
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Drugs & Compoundsfor SYT17 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for SYT17 Search CenterWatch for drugs/clinical trials and news about SYT17
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Transcriptsfor SYT17 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for SYT17 gene: NM_016524.2 Unigene Cluster for SYT17:
Synaptotagmin XVII Hs.258326 [show with all ESTs ] Unigene Representative Sequence: AK226136 9 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000570264 ENST00000566261 ENST00000355377 (uc002dfw.3 ) ENST00000568115 ENST00000562034 (uc002dfx.3 uc002dfy.3 ) ENST00000562711 ENST00000562274 ENST00000565183 ENST00000568433 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SYT17 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SYT17 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: SYT17 (NM_016524 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SYT17 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SYT17
Additional cDNA sequence: AF220560.1 AK098747.1 AK226136.1 AK296000.1 BC004518.2
9 DOTS entries : DT.110320 DT.97837404
DT.100695793 DT.120688358 DT.92421583 DT.75162435 DT.120688318 DT.40131551 DT.97804350 24/89 AceView cDNA sequences (see all 89 ):
BQ267300 AI568084 BF942106 BQ070945 AA250917 AW136805 AK098747 BX106395 NM_016524 AA372001 Z41994 BM982070 H23376 CA771221 BM714007 BC004518 AA253461 CR595216 BQ272543 AI654652 BF196505 BX088745 CA771529 BQ548669 GeneLoc Exon Structure
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Expression for SYT17 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section SYT17 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CTCAACACGCAbout this image SYT17 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See SYT17 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for SYT17 SOURCE GeneReport for Unigene cluster: Hs.258326 UniProtKB/Swiss-Prot: SYT17_HUMAN, Q9BSW7 Tissue specificity : Expressed abundantly in brain (frontal and temporal lobes, hippocampus, hypothalamus, amygdala,substantia nigra, and pituitary), kidney, and prostate. Expressed in fetal brain, kidney and lung SABiosciences Custom PCR Arrays for SYT17 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SYT17Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat SYT17 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SYT17 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SYT17 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SYT17
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Orthologsfor SYT17 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for SYT17 gene from 4/14 species (see all 14 ) About this table
ENSEMBL Gene Tree for SYT17 (if available)TreeFam Gene Tree for SYT17 (if available)
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Paralogsfor SYT17 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for SYT17 gene SYT15 2 SYT4 2 SYT5 2 SYT8 2 SYT9 2 SYT3 2 SYT10 2 SYT6 2 SYT11 2 SYT2 2 SYT12 2 SYT7 2 SYT1 2 12 SIMAP similar genes for SYT17 using alignment to 8 protein entries: SYT17_HUMAN (see all proteins ):SYT2 SYT1 SYT5 SYT7 CHR11SYT SYT10 SYT11 SYT9 SYT4 DKFZp434D2429 SYT6 SYT15
SYT17 for paralogs About GeneDecksing
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Genomic Variantsfor SYT17 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 16 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for SYT17 (19179293 - 19279652 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 7 variations for SYT17 2 CNVs : 102223 87995 5 Indels : 61495 45405 40133 25624 42561
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SYT17
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Disorders
/ Diseasesfor SYT17 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
SYT17 for disorders About GeneDecksing 3 diseases for SYT17 : About MalaCards choroiditis ataxia prostatitis Human Genome Epidemiology (HuGE) Navigator: SYT17 (1 document)Export disorders for SYT17 gene to outside databases
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Publicationsfor SYT17 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for SYT17 gene, integrated from 9 sources (see all 11 ): (articles sorted by number of sources associating them with SYT17) Utopia : connect your pdf to the dynamic world of online information
Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PubMed id 10493829) 1 , 2 , 3 Loftus B.J.... Adams M.D. (1999) Protein kinase A-dependent phosphorylation of B/K protein. (PubMed id 16672768) 1 , 2 Chin H.... Kwon O.-J. (2006) Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049) 1 OlA!h J....OvA!di J. (2011) Confirmation of prior evidence of genetic susceptibili ty to alcoholism in a genome-wide association study of comorbid alcoholism and b ipolar disorder. (PubMed id 21876473) 1 Lydall G.J....Gurling H.M. (2011) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) A systematic analysis of human CHMP protein interactions: additional MIT domain-containing proteins bind to multiple components of the human ESCRT III complex. (PubMed id 16730941) 1 Tsang H.T.H....Sanderson C.M. (2006) A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. (PubMed id 16713569) 1 Lim J.... Zoghbi H.Y. (2006) Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514) 1 Rual J.F....Vidal M. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for SYT17 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing SYT17 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing SYT17 gene
(According to HUGE )
About This Section --
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Specialized Databases showing SYT17 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for SYT17 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for SYT17 gene: Search GeneIP for patents involving SYT17 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SYT17 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for SYT17 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for SYT17 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SYT17 OriGene Protein Over-expression Lysate for SYT17 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for SYT17 OriGene 3'-UTR Clone for SYT17 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SYT17 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SYT17 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for SYT17 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for SYT17 OriGene Custom Protein Services for SYT17 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SYT17 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SYT17 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat SYT17 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat SYT17 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SYT17 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SYT17
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SYT17 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SYT17
Search ThermoFisher Antibodies for SYT17
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SYT17
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Aliases for SYT17
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Disorders / Diseases for SYT17
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Expression for SYT17
Function for SYT17
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Transcripts for SYT17
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