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Aliases for SYS1-DBNDD2 Gene

Subcategory (RNA class) for SYS1-DBNDD2 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for SYS1-DBNDD2 Gene

  • SYS1-DBNDD2 Readthrough (NMD Candidate) 2 3 5
  • SYS1-DBNDD2 Readthrough (Non-Protein Coding) 2 3
  • C20orf169-DBNDD2 3

External Ids for SYS1-DBNDD2 Gene

Previous GeneCards Identifiers for SYS1-DBNDD2 Gene

  • GC20U900295
  • GC20P043427
  • GC20P043991

Summaries for SYS1-DBNDD2 Gene

Entrez Gene Summary for SYS1-DBNDD2 Gene

  • This locus represents naturally occurring read-through transcription from the neighboring SYS1 Golgi-localized integral membrane protein homolog and dysbindin domain containing 2 (DBNDD2) genes. The read-through transcript includes the majority of exons from each individual gene, but it would be subject to nonsense-mediated mRNA decay (NMD) and is therefore predicted to be non-coding. [provided by RefSeq, Oct 2010]

GeneCards Summary for SYS1-DBNDD2 Gene

SYS1-DBNDD2 (SYS1-DBNDD2 Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the ncRNA class. An important paralog of this gene is SYS1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYS1-DBNDD2 Gene

Genomics for SYS1-DBNDD2 Gene

Regulatory Elements for SYS1-DBNDD2 Gene

Promoters for SYS1-DBNDD2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SYS1-DBNDD2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SYS1-DBNDD2 Gene

Chromosome:
20
Start:
45,363,169 bp from pter
End:
45,410,610 bp from pter
Size:
47,442 bases
Orientation:
Plus strand

Genomic View for SYS1-DBNDD2 Gene

Genes around SYS1-DBNDD2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SYS1-DBNDD2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SYS1-DBNDD2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYS1-DBNDD2 Gene

Proteins for SYS1-DBNDD2 Gene

  • Protein details for SYS1-DBNDD2 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    F2Z2A3
    Recommended name:
    Protein SYS1-DBNDD2
    Protein Accession:
    F2Z2A3

    Protein attributes for SYS1-DBNDD2 Gene

    Size:
    78 amino acids
    Molecular mass:
    8717 Da
    Quaternary structure:
    No Data Available
  • Protein details for SYS1-DBNDD2 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H3BUS1
    Recommended name:
    Protein SYS1-DBNDD2
    Protein Accession:
    H3BUS1

    Protein attributes for SYS1-DBNDD2 Gene

    Size:
    97 amino acids
    Molecular mass:
    11030 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SYS1-DBNDD2 Gene

Proteomics data for SYS1-DBNDD2 Gene at MOPED

Post-translational modifications for SYS1-DBNDD2 Gene

No Post-translational modifications

Other Protein References for SYS1-DBNDD2 Gene

No data available for DME Specific Peptides for SYS1-DBNDD2 Gene

Domains & Families for SYS1-DBNDD2 Gene

Protein Domains for SYS1-DBNDD2 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SYS1-DBNDD2: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SYS1-DBNDD2 Gene

Function for SYS1-DBNDD2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SYS1-DBNDD2 Gene

Localization for SYS1-DBNDD2 Gene

Gene Ontology (GO) - Cellular Components for SYS1-DBNDD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
GO:0030173 integral component of Golgi membrane IBA --
genes like me logo Genes that share ontologies with SYS1-DBNDD2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for SYS1-DBNDD2 Gene

Pathways & Interactions for SYS1-DBNDD2 Gene

SuperPathways for SYS1-DBNDD2 Gene

No Data Available

Interacting Proteins for SYS1-DBNDD2 Gene

Gene Ontology (GO) - Biological Process for SYS1-DBNDD2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SYS1-DBNDD2 Gene

Drugs & Compounds for SYS1-DBNDD2 Gene

No Compound Related Data Available

Transcripts for SYS1-DBNDD2 Gene

mRNA/cDNA for SYS1-DBNDD2 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SYS1-DBNDD2 Gene

No ASD Table

Relevant External Links for SYS1-DBNDD2 Gene

GeneLoc Exon Structure for
SYS1-DBNDD2
ECgene alternative splicing isoforms for
SYS1-DBNDD2

Expression for SYS1-DBNDD2 Gene

mRNA expression in normal human tissues for SYS1-DBNDD2 Gene

Protein differential expression in normal tissues from HIPED for SYS1-DBNDD2 Gene

This gene is overexpressed in Placenta (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from for SYS1-DBNDD2 Gene



genes like me logo Genes that share expression patterns with SYS1-DBNDD2: view

Protein tissue co-expression partners for SYS1-DBNDD2 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SYS1-DBNDD2 Gene

Orthologs for SYS1-DBNDD2 Gene

This gene was present in the common ancestor of animals.

Orthologs for SYS1-DBNDD2 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Gm20458 36
  • 96 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 21 (a)
ManyToMany
-- 36
  • 46 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SYS1 36
  • 36 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 42 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii sys1 36
  • 39 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG11753 36
  • 20 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea T03F1.12 36
  • 14 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 25 (a)
OneToMany
Species with no ortholog for SYS1-DBNDD2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for SYS1-DBNDD2 Gene

ENSEMBL:
Gene Tree for SYS1-DBNDD2 (if available)
TreeFam:
Gene Tree for SYS1-DBNDD2 (if available)

Paralogs for SYS1-DBNDD2 Gene

Paralogs for SYS1-DBNDD2 Gene

(1) SIMAP similar genes for SYS1-DBNDD2 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with SYS1-DBNDD2: view

Variants for SYS1-DBNDD2 Gene

Relevant External Links for SYS1-DBNDD2 Gene

HapMap Linkage Disequilibrium report
SYS1-DBNDD2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SYS1-DBNDD2 Gene

Disorders for SYS1-DBNDD2 Gene

Relevant External Links for SYS1-DBNDD2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SYS1-DBNDD2

No disorders were found for SYS1-DBNDD2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SYS1-DBNDD2 Gene

Publications for SYS1-DBNDD2 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3

Products for SYS1-DBNDD2 Gene

Sources for SYS1-DBNDD2 Gene

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