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Aliases for SYS1 Gene

Aliases for SYS1 Gene

  • Sys1 Golgi Trafficking Protein 2 3 5
  • C20orf169 3 4
  • SYS1 Golgi-Localized Integral Membrane Protein Homolog (S. Cerevisiae) 2
  • SYS1 Golgi-Localized Integral Membrane Protein Homolog 3
  • Chromosome 20 Open Reading Frame 169 2
  • DJ453C12.4.1 3
  • DJ453C12.4 3

External Ids for SYS1 Gene

Previous HGNC Symbols for SYS1 Gene

  • C20orf169

Previous GeneCards Identifiers for SYS1 Gene

  • GC20P043424
  • GC20P043990
  • GC20P040733

Summaries for SYS1 Gene

Entrez Gene Summary for SYS1 Gene

  • SYS1 forms a complex with ADP-ribosylation factor-related protein ARFRP1 (MIM 604699) and targets ARFRP1 to the Golgi apparatus (Behnia et al., 2004 [PubMed 15077113]).[supplied by OMIM, Aug 2009]

GeneCards Summary for SYS1 Gene

SYS1 (Sys1 Golgi Trafficking Protein) is a Protein Coding gene. Among its related pathways are Golgi-to-ER retrograde transport and Vesicle-mediated transport. An important paralog of this gene is SYS1-DBNDD2.

UniProtKB/Swiss-Prot for SYS1 Gene

  • Involved in protein trafficking. May serve as a receptor for ARFRP1.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYS1 Gene

Genomics for SYS1 Gene

Regulatory Elements for SYS1 Gene

Enhancers for SYS1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SYS1 on UCSC Golden Path with GeneCards custom track

Promoters for SYS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SYS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SYS1 Gene

45,361,937 bp from pter
45,376,802 bp from pter
14,866 bases
Plus strand

Genomic View for SYS1 Gene

Genes around SYS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SYS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SYS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYS1 Gene

Proteins for SYS1 Gene

  • Protein details for SYS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Protein SYS1 homolog
    Protein Accession:
    Secondary Accessions:
    • C9JFB3
    • E1P620
    • Q5QPU7
    • Q96SD8
    • Q9BQZ2
    • Q9BQZ4
    • Q9H1F7

    Protein attributes for SYS1 Gene

    156 amino acids
    Molecular mass:
    17615 Da
    Quaternary structure:
    • Interacts with ARFRP1.
    • Sequence=CAC39448.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for SYS1 Gene


neXtProt entry for SYS1 Gene

Proteomics data for SYS1 Gene at MOPED

Post-translational modifications for SYS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SYS1 Gene

Domains & Families for SYS1 Gene

Protein Domains for SYS1 Gene

Suggested Antigen Peptide Sequences for SYS1 Gene

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the SYS1 family.
  • Belongs to the SYS1 family.
genes like me logo Genes that share domains with SYS1: view

No data available for Gene Families for SYS1 Gene

Function for SYS1 Gene

Molecular function for SYS1 Gene

UniProtKB/Swiss-Prot Function:
Involved in protein trafficking. May serve as a receptor for ARFRP1.
genes like me logo Genes that share phenotypes with SYS1: view

Animal Model Products

miRNA for SYS1 Gene

miRTarBase miRNAs that target SYS1

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SYS1 Gene

Localization for SYS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SYS1 Gene

Golgi apparatus membrane; Multi-pass membrane protein.

Subcellular locations from

Jensen Localization Image for SYS1 Gene COMPARTMENTS Subcellular localization image for SYS1 gene
Compartment Confidence
golgi apparatus 3

Gene Ontology (GO) - Cellular Components for SYS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol IBA --
GO:0016021 integral component of membrane IEA --
GO:0030173 integral component of Golgi membrane IBA --
genes like me logo Genes that share ontologies with SYS1: view

Pathways & Interactions for SYS1 Gene

genes like me logo Genes that share pathways with SYS1: view

Gene Ontology (GO) - Biological Process for SYS1 Gene


No data available for SIGNOR curated interactions for SYS1 Gene

Drugs & Compounds for SYS1 Gene

No Compound Related Data Available

Transcripts for SYS1 Gene

mRNA/cDNA for SYS1 Gene

(3) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SYS1 Gene

SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SYS1 Gene

No ASD Table

Relevant External Links for SYS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SYS1 Gene

mRNA expression in normal human tissues for SYS1 Gene

Protein differential expression in normal tissues from HIPED for SYS1 Gene

This gene is overexpressed in Placenta (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for SYS1 Gene

SOURCE GeneReport for Unigene cluster for SYS1 Gene Hs.655055

genes like me logo Genes that share expression patterns with SYS1: view

Protein tissue co-expression partners for SYS1 Gene

- Elite partner

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SYS1 Gene

Orthologs for SYS1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for SYS1 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia SYS1 35
  • 95.3 (n)
  • 95.51 (a)
SYS1 36
  • 96 (a)
(Canis familiaris)
Mammalia SYS1 35
  • 96.15 (n)
  • 99.36 (a)
SYS1 36
  • 99 (a)
(Mus musculus)
Mammalia Sys1 35
  • 94.23 (n)
  • 97.44 (a)
Sys1 16
Sys1 36
  • 97 (a)
(Pan troglodytes)
Mammalia SYS1 35
  • 99.79 (n)
  • 99.36 (a)
SYS1 36
  • 99 (a)
(Rattus norvegicus)
Mammalia Sys1 35
  • 93.8 (n)
  • 97.44 (a)
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 94 (a)
-- 36
  • 91 (a)
(Gallus gallus)
Aves SYS1 35
  • 77.99 (n)
  • 79.49 (a)
SYS1 36
  • 77 (a)
(Anolis carolinensis)
Reptilia -- 36
  • 85 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia sys1 35
  • 68.16 (n)
  • 76.92 (a)
(Danio rerio)
Actinopterygii sys1 35
  • 69.66 (n)
  • 73.72 (a)
sys1 36
  • 74 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP001975 35
  • 57.14 (n)
  • 46.1 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG11753 35
  • 52.26 (n)
  • 42.58 (a)
CG11753 36
  • 41 (a)
(Caenorhabditis elegans)
Secernentea T03F1.12 35
  • 44.92 (n)
  • 36.88 (a)
T03F1.12 36
  • 34 (a)
(Oryza sativa)
Liliopsida Os01g0593600 35
  • 54.63 (n)
  • 43.06 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 48 (a)
Species with no ortholog for SYS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SYS1 Gene

Gene Tree for SYS1 (if available)
Gene Tree for SYS1 (if available)

Paralogs for SYS1 Gene

Paralogs for SYS1 Gene

(1) SIMAP similar genes for SYS1 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with SYS1: view

Variants for SYS1 Gene

Sequence variations from dbSNP and Humsavar for SYS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs2741432 -- 45,360,874(-) agtgg(C/T)gcaat upstream-variant-2KB
rs2741433 -- 45,360,589(-) CCATT(G/T)TGGCC upstream-variant-2KB
rs2741434 -- 45,360,394(-) AAGCA(A/G)TCCTC upstream-variant-2KB
rs2743407 -- 45,360,290(+) cctcc(C/T)ttcct upstream-variant-2KB
rs2743408 -- 45,360,590(+) GCCAC(A/C)ATGGT upstream-variant-2KB

Variation tolerance for SYS1 Gene

Residual Variation Intolerance Score: 39% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.77; 16.28% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for SYS1 Gene

Disorders for SYS1 Gene

Relevant External Links for SYS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SYS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SYS1 Gene

Publications for SYS1 Gene

  1. Targeting of the Arf-like GTPase Arl3p to the Golgi requires N- terminal acetylation and the membrane protein Sys1p. (PMID: 15077113) Behnia R. … Munro S. (Nat. Cell Biol. 2004) 2 3 4 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PMID: 16303743) Otsuki T. … Isogai T. (DNA Res. 2005) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3

Products for SYS1 Gene

Sources for SYS1 Gene