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Aliases for SYP-AS1 Gene

Subcategory (RNA class) for SYP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SYP-AS1 Gene

  • SYP Antisense RNA 1 2 3 5
  • SYP Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SYP-AS1 Gene

Previous GeneCards Identifiers for SYP-AS1 Gene

  • GC00U933135
  • GC0XP049080
  • GC0XP049267
  • GC0XP049270
  • GC0XP049272
  • GC0XP049275
  • GC0XP049277

Summaries for SYP-AS1 Gene

GeneCards Summary for SYP-AS1 Gene

SYP-AS1 (SYP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYP-AS1 Gene

Genomics for SYP-AS1 Gene

Regulatory Elements for SYP-AS1 Gene

Enhancers for SYP-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XG049188 1.3 Ensembl ENCODE 0.4 -8.4 -8369 4.3 HDGF PKNOX1 FOXA2 CREB3L1 ARID4B SIN3A ZBTB7B ZNF143 FOS ZNF263 PRICKLE3 CACNA1F PLP2 ENSG00000204620 SYP-AS1
GH0XG049198 0.7 ENCODE 0.7 -0.2 -167 1.1 BCOR ZSCAN5A ATF1 CBX3 ZBTB21 ZNF133 ZIC2 ZNF48 ZFHX2 POLR2A SYP-AS1 PRICKLE3
GH0XG049192 0.6 ENCODE 0.4 -5.9 -5931 0.2 CTCF ZNF654 TRIM22 REST RAD21 ZNF335 SMC3 HMBOX1 ZNF143 SP7 SYP-AS1 PRICKLE3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SYP-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SYP-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000246563 1461 1001 CREB3L1 AGO1 ZFP64 ARID4B SIN3A YY1 SLC30A9 ZNF766 CBX5 ZNF207

Genomic Location for SYP-AS1 Gene

Chromosome:
X
Start:
49,198,839 bp from pter
End:
49,202,454 bp from pter
Size:
3,616 bases
Orientation:
Plus strand

Genomic View for SYP-AS1 Gene

Genes around SYP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SYP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SYP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYP-AS1 Gene

Proteins for SYP-AS1 Gene

Post-translational modifications for SYP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SYP-AS1 Gene

Domains & Families for SYP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SYP-AS1 Gene

Function for SYP-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SYP-AS1 Gene

Localization for SYP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SYP-AS1 Gene

Pathways & Interactions for SYP-AS1 Gene

SuperPathways for SYP-AS1 Gene

No Data Available

Interacting Proteins for SYP-AS1 Gene

Gene Ontology (GO) - Biological Process for SYP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SYP-AS1 Gene

Transcripts for SYP-AS1 Gene

mRNA/cDNA for SYP-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SYP-AS1 Gene

No ASD Table

Relevant External Links for SYP-AS1 Gene

GeneLoc Exon Structure for
SYP-AS1
ECgene alternative splicing isoforms for
SYP-AS1

Expression for SYP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SYP-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SYP-AS1 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x9.1), Brain - Anterior cingulate cortex (BA24) (x7.3), Brain - Cortex (x5.3), Brain - Hypothalamus (x4.3), and Brain - Cerebellar Hemisphere (x4.2).
genes like me logo Genes that share expression patterns with SYP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SYP-AS1 Gene

Orthologs for SYP-AS1 Gene

Evolution for SYP-AS1 Gene

ENSEMBL:
Gene Tree for SYP-AS1 (if available)
TreeFam:
Gene Tree for SYP-AS1 (if available)

No data available for Orthologs for SYP-AS1 Gene

Paralogs for SYP-AS1 Gene

No data available for Paralogs for SYP-AS1 Gene

Variants for SYP-AS1 Gene

Sequence variations from dbSNP and Humsavar for SYP-AS1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs781815856 Likely benign 49,199,016(+) CGGAA(C/T)TGACC nc-transcript-variant, reference, synonymous-codon
rs1057515927 Uncertain significance 49,200,194(-) CCCTG(C/T)ATTGC intron-variant, utr-variant-5-prime
rs200470034 Uncertain significance 49,200,182(+) GCAGC(A/C/T)GCATC intron-variant, reference, missense
rs1000851398 -- 49,200,717(+) GAAAC(A/T)CCTGC intron-variant, upstream-variant-2KB
rs1000905120 -- 49,200,346(+) CAGTC(C/T)CACCG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SYP-AS1 Gene

Variant ID Type Subtype PubMed ID
esv32909 CNV gain+loss 17666407
nsv205 OTHER inversion 15895083
nsv528292 CNV gain 19592680
nsv7442 OTHER inversion 18451855

Relevant External Links for SYP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SYP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SYP-AS1 Gene

Disorders for SYP-AS1 Gene

Relevant External Links for SYP-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SYP-AS1

No disorders were found for SYP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SYP-AS1 Gene

Publications for SYP-AS1 Gene

No publications were found for SYP-AS1 Gene.

Products for SYP-AS1 Gene

Sources for SYP-AS1 Gene

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