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Aliases for SYP-AS1 Gene

Subcategory (RNA class) for SYP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SYP-AS1 Gene

  • SYP Antisense RNA 1 2 3 5
  • SYP Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SYP-AS1 Gene

Previous GeneCards Identifiers for SYP-AS1 Gene

  • GC00U933135
  • GC0XP049080
  • GC0XP049267
  • GC0XP049270
  • GC0XP049272

Summaries for SYP-AS1 Gene

GeneCards Summary for SYP-AS1 Gene

SYP-AS1 (SYP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYP-AS1 Gene

Genomics for SYP-AS1 Gene

Regulatory Elements for SYP-AS1 Gene

Enhancers for SYP-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around SYP-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SYP-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for SYP-AS1 Gene

49,198,839 bp from pter
49,202,454 bp from pter
3,616 bases
Plus strand

Genomic View for SYP-AS1 Gene

Genes around SYP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SYP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SYP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYP-AS1 Gene

Proteins for SYP-AS1 Gene

Post-translational modifications for SYP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SYP-AS1 Gene

Domains & Families for SYP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SYP-AS1 Gene

Function for SYP-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SYP-AS1 Gene

Localization for SYP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SYP-AS1 Gene

Pathways & Interactions for SYP-AS1 Gene

SuperPathways for SYP-AS1 Gene

No Data Available

Interacting Proteins for SYP-AS1 Gene

Gene Ontology (GO) - Biological Process for SYP-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SYP-AS1 Gene

Drugs & Compounds for SYP-AS1 Gene

No Compound Related Data Available

Transcripts for SYP-AS1 Gene

mRNA/cDNA for SYP-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SYP-AS1 Gene

No ASD Table

Relevant External Links for SYP-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SYP-AS1 Gene

mRNA expression in normal human tissues for SYP-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SYP-AS1 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x9.1), Brain - Anterior cingulate cortex (BA24) (x7.3), Brain - Cortex (x5.3), Brain - Hypothalamus (x4.3), and Brain - Cerebellar Hemisphere (x4.2).
genes like me logo Genes that share expression patterns with SYP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SYP-AS1 Gene

Orthologs for SYP-AS1 Gene

Evolution for SYP-AS1 Gene

Gene Tree for SYP-AS1 (if available)
Gene Tree for SYP-AS1 (if available)

No data available for Orthologs for SYP-AS1 Gene

Paralogs for SYP-AS1 Gene

No data available for Paralogs for SYP-AS1 Gene

Variants for SYP-AS1 Gene

Sequence variations from dbSNP and Humsavar for SYP-AS1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs12395646 -- 49,202,792(+) gcaat(C/T)tcagt downstream-variant-500B
rs12851853 -- 49,202,776(+) gctgg(A/G)gtgca downstream-variant-500B
rs12860308 -- 49,202,732(+) tgttt(G/T)gtttt downstream-variant-500B
rs12860310 -- 49,202,737(+) tgttt(G/T)gtttt downstream-variant-500B
rs111508987 -- 49,202,466(+) TAGTG(A/T)ATCAT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SYP-AS1 Gene

Variant ID Type Subtype PubMed ID
esv32909 CNV gain+loss 17666407
nsv205 OTHER inversion 15895083
nsv528292 CNV gain 19592680
nsv7442 OTHER inversion 18451855

Relevant External Links for SYP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SYP-AS1 Gene

Disorders for SYP-AS1 Gene

Relevant External Links for SYP-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SYP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SYP-AS1 Gene

Publications for SYP-AS1 Gene

No publications were found for SYP-AS1 Gene.

Products for SYP-AS1 Gene

Sources for SYP-AS1 Gene

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