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Aliases for SYNPR-AS1 Gene

Subcategory (RNA class) for SYNPR-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SYNPR-AS1 Gene

  • SYNPR Antisense RNA 1 2 3 5
  • SYNPR Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SYNPR-AS1 Gene

Previous GeneCards Identifiers for SYNPR-AS1 Gene

  • GC00U933616

Summaries for SYNPR-AS1 Gene

GeneCards Summary for SYNPR-AS1 Gene

SYNPR-AS1 (SYNPR Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SYNPR-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYNPR-AS1 Gene

Genomics for SYNPR-AS1 Gene

GeneHancer (GH) Regulatory Elements for SYNPR-AS1 Gene

Promoters and enhancers for SYNPR-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I063576 Enhancer 0.8 ENCODE 11.7 -27.4 -27355 2 NCOA3 GTF2F1 CLOCK SUZ12 NEUROD1 CEBPG BMI1 RFX5 ZNF507 MTA3 SYNPR-AS1 RNA5SP134 SNTN SYNPR GC03M063562
GH03I063508 Enhancer 0.7 ENCODE 11.3 +41.5 41508 1 USF1 ZBTB21 ZNF507 ZNF366 PRDM10 FOSL2 FOS KLF8 ZNF362 SP3 GC03M063497 RNA5SP134 SYNPR-AS1 GC03P063505 SYNPR
GH03I063687 Enhancer 0.6 VISTA 10.1 -138.1 -138080 2 RFX1 EZH2 SNTN SYNPR-AS1 RNA5SP134 LOC105377119 GC03M063562
GH03I063499 Enhancer 0.5 ENCODE 11.2 +49.5 49513 1.8 NFRKB NBN GATAD2B PRDM10 PAX8 NFXL1 RNA5SP134 SYNPR-AS1 ATXN7 GC03P063505 GC03M063497 GC03M063421 SYNPR
GH03I063624 Enhancer 0.5 ENCODE 10.4 -75.4 -75365 1.2 JUND POLR2A JUN ATF2 MYC ZNF18 SNTN RNA5SP134 SYNPR-AS1 GC03M063562
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SYNPR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SYNPR-AS1 Gene

Genomic Locations for SYNPR-AS1 Gene
126,456 bases
Minus strand

Genomic View for SYNPR-AS1 Gene

Genes around SYNPR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SYNPR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SYNPR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYNPR-AS1 Gene

Proteins for SYNPR-AS1 Gene

Post-translational modifications for SYNPR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SYNPR-AS1 Gene

Domains & Families for SYNPR-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SYNPR-AS1 Gene

Function for SYNPR-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SYNPR-AS1 Gene

Localization for SYNPR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SYNPR-AS1 Gene

Pathways & Interactions for SYNPR-AS1 Gene

SuperPathways for SYNPR-AS1 Gene

No Data Available

Interacting Proteins for SYNPR-AS1 Gene

Gene Ontology (GO) - Biological Process for SYNPR-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SYNPR-AS1 Gene

Drugs & Compounds for SYNPR-AS1 Gene

No Compound Related Data Available

Transcripts for SYNPR-AS1 Gene

mRNA/cDNA for SYNPR-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SYNPR-AS1 Gene

SYNPR antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SYNPR-AS1 Gene

No ASD Table

Relevant External Links for SYNPR-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SYNPR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SYNPR-AS1 Gene

SOURCE GeneReport for Unigene cluster for SYNPR-AS1 Gene:

genes like me logo Genes that share expression patterns with SYNPR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SYNPR-AS1 Gene

Orthologs for SYNPR-AS1 Gene

Evolution for SYNPR-AS1 Gene

Gene Tree for SYNPR-AS1 (if available)
Gene Tree for SYNPR-AS1 (if available)

No data available for Orthologs for SYNPR-AS1 Gene

Paralogs for SYNPR-AS1 Gene

No data available for Paralogs for SYNPR-AS1 Gene

Variants for SYNPR-AS1 Gene

Sequence variations from dbSNP and Humsavar for SYNPR-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000048894 -- 63,546,137(-) G/C intron_variant
rs1000050858 -- 63,548,384(-) G/C/T intron_variant
rs1000055836 -- 63,424,170(-) T/C intron_variant
rs1000061394 -- 63,443,073(-) G/A/T intron_variant
rs1000089670 -- 63,429,578(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SYNPR-AS1 Gene

Variant ID Type Subtype PubMed ID
esv23041 CNV loss 19812545
esv2422509 CNV deletion 17116639
esv3596393 CNV gain 21293372
nsv3848 CNV insertion 18451855
nsv590458 CNV loss 21841781

Additional Variant Information for SYNPR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SYNPR-AS1 Gene

Disorders for SYNPR-AS1 Gene

Additional Disease Information for SYNPR-AS1

No disorders were found for SYNPR-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SYNPR-AS1 Gene

Publications for SYNPR-AS1 Gene

  1. Genome-wide association study of maternal and inherited effects on left-sided cardiac malformations. (PMID: 25138779) Mitchell LE … Goldmuntz E (Human molecular genetics 2015) 3 58

Products for SYNPR-AS1 Gene

Sources for SYNPR-AS1 Gene

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