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Aliases for SYNPR-AS1 Gene

Subcategory (RNA class) for SYNPR-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SYNPR-AS1 Gene

  • SYNPR Antisense RNA 1 2 3 5
  • SYNPR Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SYNPR-AS1 Gene

Previous GeneCards Identifiers for SYNPR-AS1 Gene

  • GC00U933616

Summaries for SYNPR-AS1 Gene

GeneCards Summary for SYNPR-AS1 Gene

SYNPR-AS1 (SYNPR Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYNPR-AS1 Gene

Genomics for SYNPR-AS1 Gene

Regulatory Elements for SYNPR-AS1 Gene

Enhancers for SYNPR-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F063576 0.8 ENCODE 11.7 -27.4 -27355 2.0 GTF2F1 CEBPG RAD21 GATA3 CTBP1 MTA3 RCOR1 FOS EZH2 TCF7L2 SYNPR-AS1 RNA5SP134 SNTN C3orf49 SYNPR
GH03F063624 0.8 Ensembl ENCODE 10.4 -75.4 -75447 1.4 JUND JUN GATAD2B REST MYC ZNF18 SNTN SYNPR-AS1 RNA5SP134
GH03F063687 0.8 VISTA 10.1 -138.1 -138081 2.0 SREBF1 MTA3 RFX1 HSF1 ZBTB40 EZH2 PSMD6-AS2 SNTN SYNPR-AS1 RNA5SP134 C3orf49 ENSG00000243410 LOC105377119
GH03F063508 0.7 ENCODE 11.3 +41.5 41508 1.0 JUN ZNF366 PRDM10 FOSL2 FOS KLF8 SP3 ZNF362 ZFP37 SP2 RNA5SP134 SYNPR-AS1 GC03M063497
GH03F063499 0.5 ENCODE 11.2 +49.5 49513 1.8 NBN PRDM10 GATAD2B RNA5SP134 SYNPR-AS1 ATXN7 GC03P063505 GC03M063421
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SYNPR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SYNPR-AS1 Gene

Chromosome:
3
Start:
63,423,596 bp from pter
End:
63,550,051 bp from pter
Size:
126,456 bases
Orientation:
Minus strand

Genomic View for SYNPR-AS1 Gene

Genes around SYNPR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SYNPR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SYNPR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYNPR-AS1 Gene

Proteins for SYNPR-AS1 Gene

Post-translational modifications for SYNPR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SYNPR-AS1 Gene

Domains & Families for SYNPR-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SYNPR-AS1 Gene

Function for SYNPR-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SYNPR-AS1 Gene

Localization for SYNPR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SYNPR-AS1 Gene

Pathways & Interactions for SYNPR-AS1 Gene

SuperPathways for SYNPR-AS1 Gene

No Data Available

Interacting Proteins for SYNPR-AS1 Gene

Gene Ontology (GO) - Biological Process for SYNPR-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SYNPR-AS1 Gene

Transcripts for SYNPR-AS1 Gene

mRNA/cDNA for SYNPR-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SYNPR-AS1 Gene

SYNPR antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SYNPR-AS1 Gene

No ASD Table

Relevant External Links for SYNPR-AS1 Gene

GeneLoc Exon Structure for
SYNPR-AS1
ECgene alternative splicing isoforms for
SYNPR-AS1

Expression for SYNPR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SYNPR-AS1 Gene

SOURCE GeneReport for Unigene cluster for SYNPR-AS1 Gene:

Hs.441275
genes like me logo Genes that share expression patterns with SYNPR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SYNPR-AS1 Gene

Orthologs for SYNPR-AS1 Gene

Evolution for SYNPR-AS1 Gene

ENSEMBL:
Gene Tree for SYNPR-AS1 (if available)
TreeFam:
Gene Tree for SYNPR-AS1 (if available)

No data available for Orthologs for SYNPR-AS1 Gene

Paralogs for SYNPR-AS1 Gene

No data available for Paralogs for SYNPR-AS1 Gene

Variants for SYNPR-AS1 Gene

Sequence variations from dbSNP and Humsavar for SYNPR-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1027763 -- 63,543,983(-) CACTC(C/G)TTTGC intron-variant
rs1027764 -- 63,543,938(-) GAATA(A/C)CGCCC intron-variant
rs1039631 -- 63,542,373(-) GTATC(C/T)CCAAC intron-variant
rs10460967 -- 63,485,357(+) TAAAA(G/T)AAATA intron-variant
rs10461042 -- 63,485,211(+) CTGTT(C/T)TTGTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SYNPR-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv590458 CNV loss 21841781
nsv3848 CNV insertion 18451855
esv3596393 CNV gain 21293372
esv2422509 CNV deletion 17116639
esv23041 CNV loss 19812545

Relevant External Links for SYNPR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SYNPR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SYNPR-AS1 Gene

Disorders for SYNPR-AS1 Gene

Relevant External Links for SYNPR-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SYNPR-AS1

No disorders were found for SYNPR-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SYNPR-AS1 Gene

Publications for SYNPR-AS1 Gene

  1. Genome-wide association study of maternal and inherited effects on left-sided cardiac malformations. (PMID: 25138779) Mitchell L.E. … Goldmuntz E. (Hum. Mol. Genet. 2015) 3 64

Products for SYNPR-AS1 Gene

Sources for SYNPR-AS1 Gene

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