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Aliases for SYNJ2BP-COX16 Gene

Aliases for SYNJ2BP-COX16 Gene

  • SYNJ2BP-COX16 Readthrough 2 3 5

External Ids for SYNJ2BP-COX16 Gene

Previous GeneCards Identifiers for SYNJ2BP-COX16 Gene

  • GC14U901244
  • GC14M070794

Summaries for SYNJ2BP-COX16 Gene

Entrez Gene Summary for SYNJ2BP-COX16 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring SYNJ2BP (synaptojanin 2 binding protein) and COX16 (COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)) genes on chromosome 14. The read-through transcript produces a fusion protein that shares sequence identity with each individual gene product. Alternate splicing results in multiple transcript variants that encode different isoforms. [provided by RefSeq, Feb 2011]

GeneCards Summary for SYNJ2BP-COX16 Gene

SYNJ2BP-COX16 (SYNJ2BP-COX16 Readthrough) is a Protein Coding gene. An important paralog of this gene is SYNJ2BP.

Additional gene information for SYNJ2BP-COX16 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYNJ2BP-COX16 Gene

Genomics for SYNJ2BP-COX16 Gene

GeneHancer (GH) Regulatory Elements for SYNJ2BP-COX16 Gene

Promoters and enhancers for SYNJ2BP-COX16 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I070416 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 550.8 +0.2 243 1.7 ARID4B SIN3A DMAP1 IRF4 YY1 ETS1 SLC30A9 ZNF143 ATF7 RUNX3 SYNJ2BP SYNJ2BP-COX16 ADAM21P1 SLC8A3 GC14P070399 LOC105370555
GH14I070358 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.2 +57.7 57690 2 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 COX16 GC14P070361 RNU2-51P SRSF5 MED6 SUSD6 RPL7AP6 ADAM20P1 PTTG4P ERH
GH14I070403 Enhancer 0.4 ENCODE 0.4 +13.4 13375 0.8 CTCF SRF NFIC GC14P070399 SYNJ2BP SYNJ2BP-COX16
GH14I070394 Enhancer 0.5 ENCODE 0.3 +22.3 22251 0.2 JUND GATA3 FOXA2 DPF2 FOXA1 TCF7L2 SYNJ2BP RNU2-51P COX16 GC14P070399 GC14M070313 SYNJ2BP-COX16
GH14I070378 Enhancer 0.5 ENCODE 0.3 +36.1 36115 5.5 MAFF GATA3 ZNF316 MAFG FOXP2 MAFK EMSY ADAM21P1 COX16 SLC8A3 SYNJ2BP GC14M070313 GC14P070399 SYNJ2BP-COX16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SYNJ2BP-COX16 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SYNJ2BP-COX16 Gene

Genomic Locations for SYNJ2BP-COX16 Gene
chr14:70,325,081-70,417,090
(GRCh38/hg38)
Size:
92,010 bases
Orientation:
Minus strand
chr14:70,791,798-70,883,807
(GRCh37/hg19)

Genomic View for SYNJ2BP-COX16 Gene

Genes around SYNJ2BP-COX16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SYNJ2BP-COX16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SYNJ2BP-COX16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYNJ2BP-COX16 Gene

Proteins for SYNJ2BP-COX16 Gene

  • Protein details for SYNJ2BP-COX16 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WTA2
    Recommended name:
    SYNJ2BP-COX16 readthrough
    Protein Accession:
    A0A087WTA2

    Protein attributes for SYNJ2BP-COX16 Gene

    Size:
    40 amino acids
    Molecular mass:
    4426 Da
    Quaternary structure:
    No Data Available
  • Protein details for SYNJ2BP-COX16 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WUM0
    Recommended name:
    SYNJ2BP-COX16 readthrough
    Protein Accession:
    A0A087WUM0

    Protein attributes for SYNJ2BP-COX16 Gene

    Size:
    186 amino acids
    Molecular mass:
    20774 Da
    Quaternary structure:
    No Data Available
  • Protein details for SYNJ2BP-COX16 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WX56
    Recommended name:
    SYNJ2BP-COX16 readthrough
    Protein Accession:
    A0A087WX56

    Protein attributes for SYNJ2BP-COX16 Gene

    Size:
    53 amino acids
    Molecular mass:
    6373 Da
    Quaternary structure:
    No Data Available
  • Protein details for SYNJ2BP-COX16 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WYV9
    Recommended name:
    SYNJ2BP-COX16 readthrough
    Protein Accession:
    A0A087WYV9

    Protein attributes for SYNJ2BP-COX16 Gene

    Size:
    182 amino acids
    Molecular mass:
    20527 Da
    Quaternary structure:
    No Data Available
  • Protein details for SYNJ2BP-COX16 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087X1F5
    Recommended name:
    SYNJ2BP-COX16 readthrough
    Protein Accession:
    A0A087X1F5

    Protein attributes for SYNJ2BP-COX16 Gene

    Size:
    152 amino acids
    Molecular mass:
    17188 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SYNJ2BP-COX16 Gene

Post-translational modifications for SYNJ2BP-COX16 Gene

No Post-translational modifications

Other Protein References for SYNJ2BP-COX16 Gene

No data available for DME Specific Peptides for SYNJ2BP-COX16 Gene

Domains & Families for SYNJ2BP-COX16 Gene

Gene Families for SYNJ2BP-COX16 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for SYNJ2BP-COX16 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SYNJ2BP-COX16: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SYNJ2BP-COX16 Gene

Function for SYNJ2BP-COX16 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SYNJ2BP-COX16 Gene

Localization for SYNJ2BP-COX16 Gene

Subcellular locations from the

Human Protein Atlas (HPA)

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SYNJ2BP-COX16 Gene

Pathways & Interactions for SYNJ2BP-COX16 Gene

SuperPathways for SYNJ2BP-COX16 Gene

No Data Available

Interacting Proteins for SYNJ2BP-COX16 Gene

Gene Ontology (GO) - Biological Process for SYNJ2BP-COX16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SYNJ2BP-COX16 Gene

Drugs & Compounds for SYNJ2BP-COX16 Gene

No Compound Related Data Available

Transcripts for SYNJ2BP-COX16 Gene

mRNA/cDNA for SYNJ2BP-COX16 Gene

(3) REFSEQ mRNAs :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SYNJ2BP-COX16 Gene

No ASD Table

Relevant External Links for SYNJ2BP-COX16 Gene

GeneLoc Exon Structure for
SYNJ2BP-COX16
ECgene alternative splicing isoforms for
SYNJ2BP-COX16

Expression for SYNJ2BP-COX16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SYNJ2BP-COX16 Gene

genes like me logo Genes that share expression patterns with SYNJ2BP-COX16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SYNJ2BP-COX16 Gene

Orthologs for SYNJ2BP-COX16 Gene

Evolution for SYNJ2BP-COX16 Gene

ENSEMBL:
Gene Tree for SYNJ2BP-COX16 (if available)
TreeFam:
Gene Tree for SYNJ2BP-COX16 (if available)

No data available for Orthologs for SYNJ2BP-COX16 Gene

Paralogs for SYNJ2BP-COX16 Gene

Paralogs for SYNJ2BP-COX16 Gene

genes like me logo Genes that share paralogs with SYNJ2BP-COX16: view

Variants for SYNJ2BP-COX16 Gene

Sequence variations from dbSNP and Humsavar for SYNJ2BP-COX16 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000003707 -- 70,387,388(-) G/C/T intron_variant
rs1000014228 -- 70,404,744(-) G/A intron_variant
rs1000187847 -- 70,331,935(-) G/A intron_variant
rs1000191632 -- 70,352,184(-) T/G intron_variant
rs1000207560 -- 70,335,096(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SYNJ2BP-COX16 Gene

Variant ID Type Subtype PubMed ID
dgv1099n106 CNV deletion 24896259
esv1345963 CNV insertion 17803354
esv1691671 CNV insertion 17803354
esv2748835 CNV deletion 23290073
esv2748836 CNV deletion 23290073
esv3184541 CNV deletion 24192839
esv3634860 CNV loss 21293372
esv989380 CNV insertion 20482838
nsv1116461 OTHER inversion 24896259
nsv1116745 CNV tandem duplication 24896259
nsv1125586 CNV tandem duplication 24896259
nsv1140303 OTHER inversion 24896259
nsv1142339 CNV deletion 24896259
nsv952864 CNV deletion 24416366
nsv958777 CNV deletion 24416366

Additional Variant Information for SYNJ2BP-COX16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SYNJ2BP-COX16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SYNJ2BP-COX16 Gene

Disorders for SYNJ2BP-COX16 Gene

Additional Disease Information for SYNJ2BP-COX16

No disorders were found for SYNJ2BP-COX16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SYNJ2BP-COX16 Gene

Publications for SYNJ2BP-COX16 Gene

  1. Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia. (PMID: 24954895) Simino J … Rao DC (American journal of human genetics 2014) 3 58
  2. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T … Taylor TD (PloS one 2010) 3 58

Products for SYNJ2BP-COX16 Gene

Sources for SYNJ2BP-COX16 Gene

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