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Aliases for SYNJ2BP-COX16 Gene

Aliases for SYNJ2BP-COX16 Gene

  • SYNJ2BP-COX16 Readthrough 2 3

External Ids for SYNJ2BP-COX16 Gene

Summaries for SYNJ2BP-COX16 Gene

Entrez Gene Summary for SYNJ2BP-COX16 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring SYNJ2BP (synaptojanin 2 binding protein) and COX16 (COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)) genes on chromosome 14. The read-through transcript produces a fusion protein that shares sequence identity with each individual gene product. Alternate splicing results in multiple transcript variants that encode different isoforms. [provided by RefSeq, Feb 2011]

GeneCards Summary for SYNJ2BP-COX16 Gene

SYNJ2BP-COX16 (SYNJ2BP-COX16 Readthrough) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYNJ2BP-COX16 Gene

Genomics for SYNJ2BP-COX16 Gene

Genomic Location for SYNJ2BP-COX16 Gene

Start:
70,325,081 bp from pter
End:
70,417,090 bp from pter
Size:
92,010 bases
Orientation:
Minus strand

Genomic View for SYNJ2BP-COX16 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SYNJ2BP-COX16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYNJ2BP-COX16 Gene

No data available for Regulatory Elements for SYNJ2BP-COX16 Gene

Proteins for SYNJ2BP-COX16 Gene

  • Protein details for SYNJ2BP-COX16 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WTA2-A0A087WTA2
    Recommended name:
    Protein SYNJ2BP-COX16
    Protein Accession:
    A0A087WTA2
    Secondary Accessions:

    Protein attributes for SYNJ2BP-COX16 Gene

    Size:
    40 amino acids
    Molecular mass:
    4426 Da
    Quaternary structure:
    No Data Available
  • Protein details for SYNJ2BP-COX16 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WUM0-A0A087WUM0
    Recommended name:
    Protein SYNJ2BP-COX16
    Protein Accession:
    A0A087WUM0
    Secondary Accessions:

    Protein attributes for SYNJ2BP-COX16 Gene

    Size:
    186 amino acids
    Molecular mass:
    20774 Da
    Quaternary structure:
    No Data Available
  • Protein details for SYNJ2BP-COX16 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WX56-A0A087WX56
    Recommended name:
    Protein SYNJ2BP-COX16
    Protein Accession:
    A0A087WX56
    Secondary Accessions:

    Protein attributes for SYNJ2BP-COX16 Gene

    Size:
    53 amino acids
    Molecular mass:
    6373 Da
    Quaternary structure:
    No Data Available
  • Protein details for SYNJ2BP-COX16 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WYV9-A0A087WYV9
    Recommended name:
    Protein SYNJ2BP-COX16
    Protein Accession:
    A0A087WYV9
    Secondary Accessions:

    Protein attributes for SYNJ2BP-COX16 Gene

    Size:
    182 amino acids
    Molecular mass:
    20527 Da
    Quaternary structure:
    No Data Available
  • Protein details for SYNJ2BP-COX16 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087X1F5-A0A087X1F5
    Recommended name:
    Protein SYNJ2BP-COX16
    Protein Accession:
    A0A087X1F5
    Secondary Accessions:

    Protein attributes for SYNJ2BP-COX16 Gene

    Size:
    152 amino acids
    Molecular mass:
    17188 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SYNJ2BP-COX16 Gene

Proteomics data for SYNJ2BP-COX16 Gene at MOPED

Post-translational modifications for SYNJ2BP-COX16 Gene

No Post-translational modifications

Other Protein References for SYNJ2BP-COX16 Gene

No data available for DME Specific Peptides for SYNJ2BP-COX16 Gene

Domains for SYNJ2BP-COX16 Gene

Protein Domains for SYNJ2BP-COX16 Gene

genes like me logo Genes that share domains with SYNJ2BP-COX16: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SYNJ2BP-COX16 Gene

Function for SYNJ2BP-COX16 Gene

Gene Ontology (GO) - Molecular Function for SYNJ2BP-COX16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with SYNJ2BP-COX16: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SYNJ2BP-COX16 Gene

Localization for SYNJ2BP-COX16 Gene

No data available for Gene Ontology (GO) - Cellular Components for SYNJ2BP-COX16 Gene

Pathways for SYNJ2BP-COX16 Gene

SuperPathways for SYNJ2BP-COX16 Gene

No Data Available

Interacting Proteins for SYNJ2BP-COX16 Gene

Gene Ontology (GO) - Biological Process for SYNJ2BP-COX16 Gene

None

No data available for Pathways by source for SYNJ2BP-COX16 Gene

Transcripts for SYNJ2BP-COX16 Gene

mRNA/cDNA for SYNJ2BP-COX16 Gene

(3) REFSEQ mRNAs :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SYNJ2BP-COX16 Gene

No ASD Table

Relevant External Links for SYNJ2BP-COX16 Gene

GeneLoc Exon Structure for
SYNJ2BP-COX16
ECgene alternative splicing isoforms for
SYNJ2BP-COX16

Expression for SYNJ2BP-COX16 Gene

mRNA expression in normal human tissues for SYNJ2BP-COX16 Gene

genes like me logo Genes that share expressions with SYNJ2BP-COX16: view

Orthologs for SYNJ2BP-COX16 Gene

Evolution for SYNJ2BP-COX16 Gene

ENSEMBL:
Gene Tree for SYNJ2BP-COX16 (if available)
TreeFam:
Gene Tree for SYNJ2BP-COX16 (if available)

No data available for Orthologs for SYNJ2BP-COX16 Gene

Paralogs for SYNJ2BP-COX16 Gene

No data available for Paralogs for SYNJ2BP-COX16 Gene

Variants for SYNJ2BP-COX16 Gene

Sequence variations from dbSNP and Humsavar for SYNJ2BP-COX16 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs3759774 -- 70,361,781(+) ACAGT(A/G)GGAAT intron-variant
rs6420899 -- 70,362,966(+) GGAAG(G/T)GGTAC intron-variant
rs7155508 -- 70,364,168(+) agaga(C/G/T)gaggt intron-variant
rs7155644 -- 70,364,102(+) tagct(A/G)ggaca intron-variant
rs7159498 -- 70,362,649(+) TAATC(A/G)AAAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SYNJ2BP-COX16 Gene

Variant ID Type Subtype PubMed ID
nsv902075 CNV Gain 21882294
esv2748835 CNV Deletion 23290073
esv2748836 CNV Deletion 23290073
esv1345963 CNV Insertion 17803354
esv989380 CNV Insertion 20482838
esv1691671 CNV Insertion 17803354

Relevant External Links for SYNJ2BP-COX16 Gene

HapMap Linkage Disequilibrium report
SYNJ2BP-COX16

Disorders for SYNJ2BP-COX16 Gene

No disorders were found for SYNJ2BP-COX16 Gene.

No data available for UniProtKB/Swiss-Prot for SYNJ2BP-COX16 Gene

Publications for SYNJ2BP-COX16 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3
  2. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PMID: 21890473) Wagner S.A. … Choudhary C. (Mol. Cell Proteomics 2011) 3
  3. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PMID: 23000965) Povlsen L.K. … Choudhary C. (Nat. Cell Biol. 2012) 3
  4. Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia. (PMID: 24954895) Simino J. … Rao D.C. (Am. J. Hum. Genet. 2014) 3

Products for SYNJ2BP-COX16 Gene

Sources for SYNJ2BP-COX16 Gene

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