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Aliases for SYNJ2BP-COX16 Gene

Aliases for SYNJ2BP-COX16 Gene

  • SYNJ2BP-COX16 Readthrough 2 3 5

External Ids for SYNJ2BP-COX16 Gene

Previous GeneCards Identifiers for SYNJ2BP-COX16 Gene

  • GC14U901244
  • GC14M070794

Summaries for SYNJ2BP-COX16 Gene

Entrez Gene Summary for SYNJ2BP-COX16 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring SYNJ2BP (synaptojanin 2 binding protein) and COX16 (COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)) genes on chromosome 14. The read-through transcript produces a fusion protein that shares sequence identity with each individual gene product. Alternate splicing results in multiple transcript variants that encode different isoforms. [provided by RefSeq, Feb 2011]

GeneCards Summary for SYNJ2BP-COX16 Gene

SYNJ2BP-COX16 (SYNJ2BP-COX16 Readthrough) is a Protein Coding gene. An important paralog of this gene is SYNJ2BP.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYNJ2BP-COX16 Gene

Genomics for SYNJ2BP-COX16 Gene

Regulatory Elements for SYNJ2BP-COX16 Gene

Enhancers for SYNJ2BP-COX16 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SYNJ2BP-COX16 on UCSC Golden Path with GeneCards custom track

Promoters for SYNJ2BP-COX16 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SYNJ2BP-COX16 on UCSC Golden Path with GeneCards custom track

Genomic Location for SYNJ2BP-COX16 Gene

Chromosome:
14
Start:
70,325,081 bp from pter
End:
70,417,090 bp from pter
Size:
92,010 bases
Orientation:
Minus strand

Genomic View for SYNJ2BP-COX16 Gene

Genes around SYNJ2BP-COX16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SYNJ2BP-COX16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SYNJ2BP-COX16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYNJ2BP-COX16 Gene

Proteins for SYNJ2BP-COX16 Gene

  • Protein details for SYNJ2BP-COX16 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WTA2
    Recommended name:
    Protein SYNJ2BP-COX16
    Protein Accession:
    A0A087WTA2

    Protein attributes for SYNJ2BP-COX16 Gene

    Size:
    40 amino acids
    Molecular mass:
    4426 Da
    Quaternary structure:
    No Data Available
  • Protein details for SYNJ2BP-COX16 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WUM0
    Recommended name:
    Protein SYNJ2BP-COX16
    Protein Accession:
    A0A087WUM0

    Protein attributes for SYNJ2BP-COX16 Gene

    Size:
    186 amino acids
    Molecular mass:
    20774 Da
    Quaternary structure:
    No Data Available
  • Protein details for SYNJ2BP-COX16 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WX56
    Recommended name:
    Protein SYNJ2BP-COX16
    Protein Accession:
    A0A087WX56

    Protein attributes for SYNJ2BP-COX16 Gene

    Size:
    54 amino acids
    Molecular mass:
    6486 Da
    Quaternary structure:
    No Data Available
  • Protein details for SYNJ2BP-COX16 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087WYV9
    Recommended name:
    Protein SYNJ2BP-COX16
    Protein Accession:
    A0A087WYV9

    Protein attributes for SYNJ2BP-COX16 Gene

    Size:
    182 amino acids
    Molecular mass:
    20527 Da
    Quaternary structure:
    No Data Available
  • Protein details for SYNJ2BP-COX16 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087X1F5
    Recommended name:
    Protein SYNJ2BP-COX16
    Protein Accession:
    A0A087X1F5

    Protein attributes for SYNJ2BP-COX16 Gene

    Size:
    153 amino acids
    Molecular mass:
    17301 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SYNJ2BP-COX16 Gene

Proteomics data for SYNJ2BP-COX16 Gene at MOPED

Post-translational modifications for SYNJ2BP-COX16 Gene

No Post-translational modifications

Other Protein References for SYNJ2BP-COX16 Gene

No data available for DME Specific Peptides for SYNJ2BP-COX16 Gene

Domains & Families for SYNJ2BP-COX16 Gene

Protein Domains for SYNJ2BP-COX16 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SYNJ2BP-COX16: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SYNJ2BP-COX16 Gene

Function for SYNJ2BP-COX16 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SYNJ2BP-COX16 Gene

Localization for SYNJ2BP-COX16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SYNJ2BP-COX16 Gene

Pathways & Interactions for SYNJ2BP-COX16 Gene

SuperPathways for SYNJ2BP-COX16 Gene

No Data Available

Interacting Proteins for SYNJ2BP-COX16 Gene

Gene Ontology (GO) - Biological Process for SYNJ2BP-COX16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SYNJ2BP-COX16 Gene

Drugs & Compounds for SYNJ2BP-COX16 Gene

No Compound Related Data Available

Transcripts for SYNJ2BP-COX16 Gene

mRNA/cDNA for SYNJ2BP-COX16 Gene

(3) REFSEQ mRNAs :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SYNJ2BP-COX16 Gene

No ASD Table

Relevant External Links for SYNJ2BP-COX16 Gene

GeneLoc Exon Structure for
SYNJ2BP-COX16
ECgene alternative splicing isoforms for
SYNJ2BP-COX16

Expression for SYNJ2BP-COX16 Gene

mRNA expression in normal human tissues for SYNJ2BP-COX16 Gene

genes like me logo Genes that share expression patterns with SYNJ2BP-COX16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SYNJ2BP-COX16 Gene

Orthologs for SYNJ2BP-COX16 Gene

Evolution for SYNJ2BP-COX16 Gene

ENSEMBL:
Gene Tree for SYNJ2BP-COX16 (if available)
TreeFam:
Gene Tree for SYNJ2BP-COX16 (if available)

No data available for Orthologs for SYNJ2BP-COX16 Gene

Paralogs for SYNJ2BP-COX16 Gene

Paralogs for SYNJ2BP-COX16 Gene

genes like me logo Genes that share paralogs with SYNJ2BP-COX16: view

Variants for SYNJ2BP-COX16 Gene

Sequence variations from dbSNP and Humsavar for SYNJ2BP-COX16 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs8008053 -- 70,365,939(+) tattg(A/C)cactg intron-variant
rs3759774 -- 70,361,781(+) ACAGT(A/G)GGAAT intron-variant
rs7155508 -- 70,364,168(+) agaga(C/G/T)gaggt intron-variant
rs7155644 -- 70,364,102(+) tagct(A/G)ggaca intron-variant
rs7159498 -- 70,362,649(+) TAATC(A/G)AAAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SYNJ2BP-COX16 Gene

Variant ID Type Subtype PubMed ID
nsv902075 CNV Gain 21882294
esv2748835 CNV Deletion 23290073
esv2748836 CNV Deletion 23290073
esv1345963 CNV Insertion 17803354
esv989380 CNV Insertion 20482838
esv1691671 CNV Insertion 17803354

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for SYNJ2BP-COX16 Gene

Disorders for SYNJ2BP-COX16 Gene

Relevant External Links for SYNJ2BP-COX16

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SYNJ2BP-COX16

No disorders were found for SYNJ2BP-COX16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SYNJ2BP-COX16 Gene

Publications for SYNJ2BP-COX16 Gene

  1. Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia. (PMID: 24954895) Simino J. … Rao D.C. (Am. J. Hum. Genet. 2014) 3 67
  2. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3

Products for SYNJ2BP-COX16 Gene

Sources for SYNJ2BP-COX16 Gene

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