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Aliases for SYNJ2-IT1 Gene

Subcategory (RNA class) for SYNJ2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SYNJ2-IT1 Gene

  • SYNJ2 Intronic Transcript 1 2 3 5
  • SYNJ2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for SYNJ2-IT1 Gene

Previous GeneCards Identifiers for SYNJ2-IT1 Gene

  • GC00U933550
  • GC06P158423

Summaries for SYNJ2-IT1 Gene

GeneCards Summary for SYNJ2-IT1 Gene

SYNJ2-IT1 (SYNJ2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYNJ2-IT1 Gene

Genomics for SYNJ2-IT1 Gene

Genomic Location for SYNJ2-IT1 Gene

Chromosome:
6
Start:
158,001,107 bp from pter
End:
158,002,383 bp from pter
Size:
1,277 bases
Orientation:
Plus strand

Genomic View for SYNJ2-IT1 Gene

Genes around SYNJ2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SYNJ2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SYNJ2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYNJ2-IT1 Gene

No data available for Regulatory Elements for SYNJ2-IT1 Gene

Proteins for SYNJ2-IT1 Gene

Post-translational modifications for SYNJ2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SYNJ2-IT1 Gene

Domains & Families for SYNJ2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SYNJ2-IT1 Gene

Function for SYNJ2-IT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SYNJ2-IT1 Gene

Localization for SYNJ2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SYNJ2-IT1 Gene

Pathways & Interactions for SYNJ2-IT1 Gene

SuperPathways for SYNJ2-IT1 Gene

No Data Available

Interacting Proteins for SYNJ2-IT1 Gene

Gene Ontology (GO) - Biological Process for SYNJ2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SYNJ2-IT1 Gene

Drugs & Compounds for SYNJ2-IT1 Gene

No Compound Related Data Available

Transcripts for SYNJ2-IT1 Gene

mRNA/cDNA for SYNJ2-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SYNJ2-IT1 Gene

SYNJ2 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SYNJ2-IT1 Gene

No ASD Table

Relevant External Links for SYNJ2-IT1 Gene

GeneLoc Exon Structure for
SYNJ2-IT1
ECgene alternative splicing isoforms for
SYNJ2-IT1

Expression for SYNJ2-IT1 Gene

mRNA expression in normal human tissues for SYNJ2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for SYNJ2-IT1 Gene

This gene is overexpressed in Testis (x28.8), Brain - Putamen (basal ganglia) (x5.0), Heart - Atrial Appendage (x4.8), and Colon - Transverse (x4.0).

SOURCE GeneReport for Unigene cluster for SYNJ2-IT1 Gene Hs.742238

genes like me logo Genes that share expression patterns with SYNJ2-IT1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SYNJ2-IT1 Gene

Orthologs for SYNJ2-IT1 Gene

Evolution for SYNJ2-IT1 Gene

ENSEMBL:
Gene Tree for SYNJ2-IT1 (if available)
TreeFam:
Gene Tree for SYNJ2-IT1 (if available)

No data available for Orthologs for SYNJ2-IT1 Gene

Paralogs for SYNJ2-IT1 Gene

No data available for Paralogs for SYNJ2-IT1 Gene

Variants for SYNJ2-IT1 Gene

Relevant External Links for SYNJ2-IT1 Gene

HapMap Linkage Disequilibrium report
SYNJ2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SYNJ2-IT1 Gene

Disorders for SYNJ2-IT1 Gene

Relevant External Links for SYNJ2-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SYNJ2-IT1

No disorders were found for SYNJ2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SYNJ2-IT1 Gene

Publications for SYNJ2-IT1 Gene

No publications were found for SYNJ2-IT1 Gene.

Products for SYNJ2-IT1 Gene

Sources for SYNJ2-IT1 Gene

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