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Aliases for SYNJ2-IT1 Gene

Subcategory (RNA class) for SYNJ2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SYNJ2-IT1 Gene

  • SYNJ2 Intronic Transcript 1 2 3 5
  • SYNJ2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for SYNJ2-IT1 Gene

Previous GeneCards Identifiers for SYNJ2-IT1 Gene

  • GC00U933550
  • GC06P158423

Summaries for SYNJ2-IT1 Gene

GeneCards Summary for SYNJ2-IT1 Gene

SYNJ2-IT1 (SYNJ2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYNJ2-IT1 Gene

Genomics for SYNJ2-IT1 Gene

Regulatory Elements for SYNJ2-IT1 Gene

Enhancers for SYNJ2-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G158001 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +2.2 2205 3.4 ATF1 ZNF766 GATA2 ELK1 KLF13 CAVIN1 ZNF592 SREBF1 MEF2D CREB3 SYNJ2 SYNJ2-IT1 GC06M158055
GH06G157996 1 ENCODE dbSUPER 0.7 -4.6 -4554 0.0 HDGF RNF2 L3MBTL2 GFI1B DPF2 ZEB2 ZIC2 ZFHX2 EGR1 SMARCA4 SYNJ2-IT1 SYNJ2
GH06G158007 1.6 Ensembl ENCODE dbSUPER 0.4 +9.3 9258 5.1 HDGF FOXA2 MLX ZFP64 ARID4B DMAP1 SLC30A9 FOS PAF1 SP5 SYNJ2 RNU6-786P GTF2H5 RSPH3 SYNJ2-IT1 GC06M158055
GH06G158016 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +18.3 18317 5.8 KLF17 BMI1 CBX5 SCRT2 ETV6 RELB FOS CREM IKZF2 EGR2 SYNJ2 RNU6-786P GTF2H5 SYNJ2-IT1 GC06M158055
GH06G157999 0.9 ENCODE dbSUPER 0.7 -1.6 -1611 0.8 TFAP4 MXI1 SAP130 MAX ZNF384 RAD21 ZIC2 ZNF48 TEAD3 POLR2A SYNJ2 SYNJ2-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SYNJ2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SYNJ2-IT1 Gene

Chromosome:
6
Start:
158,001,107 bp from pter
End:
158,002,383 bp from pter
Size:
1,277 bases
Orientation:
Plus strand

Genomic View for SYNJ2-IT1 Gene

Genes around SYNJ2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SYNJ2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SYNJ2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYNJ2-IT1 Gene

Proteins for SYNJ2-IT1 Gene

Post-translational modifications for SYNJ2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SYNJ2-IT1 Gene

Domains & Families for SYNJ2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SYNJ2-IT1 Gene

Function for SYNJ2-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SYNJ2-IT1 Gene

Localization for SYNJ2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SYNJ2-IT1 Gene

Pathways & Interactions for SYNJ2-IT1 Gene

SuperPathways for SYNJ2-IT1 Gene

No Data Available

Interacting Proteins for SYNJ2-IT1 Gene

Gene Ontology (GO) - Biological Process for SYNJ2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SYNJ2-IT1 Gene

Drugs & Compounds for SYNJ2-IT1 Gene

No Compound Related Data Available

Transcripts for SYNJ2-IT1 Gene

mRNA/cDNA for SYNJ2-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SYNJ2-IT1 Gene

SYNJ2 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SYNJ2-IT1 Gene

No ASD Table

Relevant External Links for SYNJ2-IT1 Gene

GeneLoc Exon Structure for
SYNJ2-IT1
ECgene alternative splicing isoforms for
SYNJ2-IT1

Expression for SYNJ2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SYNJ2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for SYNJ2-IT1 Gene

This gene is overexpressed in Testis (x28.8), Brain - Putamen (basal ganglia) (x5.0), Heart - Atrial Appendage (x4.8), and Colon - Transverse (x4.0).

SOURCE GeneReport for Unigene cluster for SYNJ2-IT1 Gene:

Hs.742238
genes like me logo Genes that share expression patterns with SYNJ2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SYNJ2-IT1 Gene

Orthologs for SYNJ2-IT1 Gene

Evolution for SYNJ2-IT1 Gene

ENSEMBL:
Gene Tree for SYNJ2-IT1 (if available)
TreeFam:
Gene Tree for SYNJ2-IT1 (if available)

No data available for Orthologs for SYNJ2-IT1 Gene

Paralogs for SYNJ2-IT1 Gene

No data available for Paralogs for SYNJ2-IT1 Gene

Variants for SYNJ2-IT1 Gene

Sequence variations from dbSNP and Humsavar for SYNJ2-IT1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1001196604 -- 157,999,777(+) GGTAG(C/T)GTTTG intron-variant, upstream-variant-2KB
rs1001240687 -- 157,999,466(+) CCAGC(C/T)CTATG intron-variant, upstream-variant-2KB
rs1001988933 -- 158,002,632(+) TGGTG(G/T)CTAGG intron-variant, downstream-variant-500B
rs1002655114 -- 158,000,425(+) CATGT(C/T)CTGGT intron-variant, upstream-variant-2KB
rs1003402209 -- 158,002,391(+) GGAAA(C/T)AGGGA intron-variant, downstream-variant-500B

Relevant External Links for SYNJ2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SYNJ2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SYNJ2-IT1 Gene

Disorders for SYNJ2-IT1 Gene

Relevant External Links for SYNJ2-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SYNJ2-IT1

No disorders were found for SYNJ2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SYNJ2-IT1 Gene

Publications for SYNJ2-IT1 Gene

No publications were found for SYNJ2-IT1 Gene.

Products for SYNJ2-IT1 Gene

Sources for SYNJ2-IT1 Gene

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