SYNGR2 Gene
protein-coding GIFtS: 52
GCID: GC17P076164
|
|
synaptogyrin 2
| |
Aliases
for SYNGR2 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Synaptogyrin 21 2 | | Cellugyrin3 | | Synaptogyrin-21 | | Cellugyrin3 |
Export aliases for SYNGR2 gene to outside databasesPrevious GC identifers: GC17P075988 GC17P079151 GC17P076625 GC17P076761 GC17P073676 GC17P071589 |
Summaries
for SYNGR2 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for SYNGR2:
This gene encodes an integral membrane protein containing four transmembrane regions and a C-terminal cytoplasmic tailthat is tyrosine phosphorylated. The exact function of this protein is unclear, but studies of a similar rat proteinsuggest that it may play a role in regulating membrane traffic in non-neuronal cells. The gene belongs to thesynaptogyrin gene family. (provided by RefSeq, Jul 2008)
|
Genomic Views
for SYNGR2 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000017.10 NC_018928.1 NT_010783.15
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the SYNGR2 gene promoter:
Pax-5 Nkx6-1 AML1a Pax-2b p53 Pax-2 Pax-2a GATA-1
Other transcription factors
Search SABiosciences Chromatin IP Primers for SYNGR2
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SYNGR2 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 17q25.3 Ensembl cytogenetic band: 17q25.3 HGNC cytogenetic band: 17q25.3SYNGR2 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 17 GeneLoc Exon Structure GeneLoc location for GC17P076164: view genomic region
(about GC identifiers)
Start:
|
76,164,639 bp from pter |
End:
|
76,169,608 bp from pter |
Size:
|
4,970 bases |
Orientation:
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plus strand |
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Proteins
for SYNGR2 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: SNG2_HUMAN, O43760 (See
protein sequence)Recommended Name: Synaptogyrin-2 Size: 224 amino acids; 24810 Da
Subcellular location: Membrane; Multi-pass membrane protein. Cytoplasmic vesicle (By similarity)
Secondary accessions: O43762 Q658S7Explore the universe of human proteins at neXtProt for SYNGR2: NX_O43760
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_O43760
SYNGR2 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_004701.1
ENSEMBL proteins: ENSP00000225777 ENSP00000465678 ENSP00000466942 ENSP00000466032 ENSP00000467600 ENSP00000466204 ENSP00000465005
Human Recombinant Protein Products:
Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view): About this table
SYNGR2 for ontologies About GeneDecksing
SYNGR2 Antibody Products:
Assay Products for SYNGR2: |
Protein
Domains /
Families
for SYNGR2 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
SYNGR2 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry O43760ProtoNet protein and cluster: O43760 1 Blocks protein family: IPB008253 Marvel
UniProtKB/Swiss-Prot: SNG2_HUMAN, O43760Similarity: Belongs to the synaptogyrin familySimilarity: Contains 1 MARVEL domain |
Function
for SYNGR2 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
Genatlas biochemistry entry for SYNGR2:synaptogyrin 2,putative vesicle protein,expressed in all tissues except in brain
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for SYNGR2 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for SYNGR2
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SYNGR2 |
1 GenomeRNAi human phenotype for SYNGR2:
|
Pathways & Interactions
for SYNGR2 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SYNGR2
STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)
2 Interacting proteins for SYNGR2 (O437603 ENSP000002257774) via UniProtKB, MINT, STRING, and/or I2DAbout this table
Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006605 | protein targeting |
IEA | -- |
SYNGR2 for ontologies About GeneDecksing
|
Drugs & Compounds
for SYNGR2 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for SYNGR2
Search CenterWatch for drugs/clinical trials and news about SYNGR2 / SNG2
|
Transcripts
for SYNGR2 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for SYNGR2 gene: NM_004710.3 Unigene Cluster for SYNGR2: Synaptogyrin 2 Hs.464210 [show with all ESTs]Unigene Representative Sequence: BC0004079 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000225777(uc002jut.3 uc002juu.1) ENST00000585591 ENST00000589183
ENST00000589711 ENST00000591770 ENST00000588282 ENST00000589168 ENST00000590201
ENST00000592456
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for SYNGR2 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for SYNGR2
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: SYNGR2 (NM_004710) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SYNGR2 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SYNGR2 |
Additional cDNA sequence: AJ002308.1 AY358916.1 BC000407.2 BC029755.1 BC105992.1 24/27 DOTS entries (see all 27): DT.100818287 DT.452646 DT.95327492 DT.40106689 DT.92455229 DT.95187297 DT.100818291 DT.100818271 DT.92455227 DT.100818290 DT.120955048 DT.121075567 DT.95187289 DT.100847467 DT.120955055 DT.121621457 DT.86842947 DT.92455222 DT.92455224 DT.95187288 DT.95187308 DT.95310891 DT.97796112 DT.100818269 24/752 AceView cDNA sequences (see all 752): AI139048 BQ929185 AW117881 BC029755 BM672975 BQ677781 BQ893082 CD365882 CR592439 AW473135 BU541667 BG286601 BU541270 BM763368 AI684266 AW512364 CR610377 BM310803 AI687780 BQ682050 CR614467 BE744419 AW574792 BM764418
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for SYNGR2 About this scheme
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b |
|---|
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| SP1: | | | | | | | | | | | | | |
| SP2: | | | | | | | - | | | | | |
ECgene alternative splicing isoforms for SYNGR2
|
Expression
for SYNGR2 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| SYNGR2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GCTCCCAGAC
About this image
See SYNGR2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for SYNGR2
SOURCE GeneReport for Unigene cluster: Hs.464210
UniProtKB/Swiss-Prot: SNG2_HUMAN, O43760Tissue specificity: Ubiquitous; low expression in brain
SABiosciences Custom PCR Arrays for SYNGR2
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for SYNGR2
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat SYNGR2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SYNGR2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SYNGR2 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SYNGR2 |
Orthologs
for SYNGR2 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for SYNGR2 gene from 5/16 species (see all 16) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
chicken
(Gallus gallus) |
Aves |
SYNGR21 |
synaptogyrin 2 |
75.74(n)
73.3(a) |
|
100859110 XM_003642363.1 XP_003642411.1 |
lizard
(Anolis carolinensis) |
Reptilia |
SYNGR26 |
-- |
66(a) |
1 ↔ 1 |
2(102305518-102313185) |
zebrafish
(Danio rerio) |
Actinopterygii |
LOC1005378071 |
synaptogyrin-2-like |
60.4(n)
52.29(a) |
|
100537807 XM_003199534.1 XP_003199582.1 |
fruit fly
(Drosophila melanogaster) |
Insecta |
synaptogyrin3 |
regulation of calcium ion dependent
exocytosis |
38(a) |
|
50C6 -- |
worm
(Caenorhabditis elegans) |
Secernentea |
sng-16 |
Synaptogyrin homolog 1 |
23(a) |
1 → many |
X(7327559-7329631) |
ENSEMBL Gene Tree for SYNGR2 (if available)
TreeFam Gene Tree for SYNGR2 (if available) |
Paralogs
for SYNGR2 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for SYNGR2 gene
- SYNGR42 SYNGR12 SYNGR32
3 SIMAP similar genes for SYNGR2 using alignment to 6 protein entries: SNG2_HUMAN (see all proteins):SYNGR1 SYNGR3 SYNGR4
SYNGR2 for paralogs About GeneDecksing
2 Pseudogenes.org Pseudogenes for SYNGR2
PGOHUM00000258932 PGOHUM00000236219
|
Genomic Variants
for SYNGR2 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 17 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for SYNGR2 (76164639 - 76169608 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for SYNGR2
1 CNV: 30027 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing SYNGR2 |
|
Disorders
/ Diseases
for SYNGR2 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
SYNGR2 for disorders About GeneDecksing
OMIM gene information: 603926
OMIM disorders: --
1  disease for SYNGR2: About MalaCardsneuronitis
Export disorders for SYNGR2 gene to outside databases
|
Publications
for SYNGR2 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for SYNGR2 gene, integrated from 9 sources (see all 12):
(articles sorted by number of sources associating them with SYNGR2) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Characterization of the human synaptogyrin gene family. (PubMed id 9760194)1, 2, 3, 9 Kedra D....Dumanski J.P. (1998)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2 Clark H.F.... Gray A.M. (2003)
- Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
- Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
- A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
- The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- Cellugyrin, a novel ubiquitous form of synaptogyrin that is phosphorylated by pp60c-src. (PubMed id 9446595)1 Janz R. and Sudhof T.C. (1998)
- Cellugyrin is a marker for a distinct population of intracellular Glut4-containing vesicles. (PubMed id 10967091)9 Kupriyanova T.A. and Kandror K.V. (2000)
|
External Searches for SYNGR2 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing SYNGR2 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing SYNGR2 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SYNGR2 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for SYNGR2 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for SYNGR2 gene:
Search GeneIP for patents involving SYNGR2
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for SYNGR2 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | OriGene Antibodies for SYNGR2 | | OriGene shRNA RFP for SYNGR2 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for SYNGR2 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for SYNGR2 | | | OriGene Protein Over-expression Lysate for SYNGR2 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for SYNGR2 | | OriGene 3'-UTR Clone for SYNGR2 | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for SYNGR2 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for SYNGR2 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | OriGene Purified Protein for SYNGR2 | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for SYNGR2 | | OriGene Custom Protein Services for SYNGR2 | | | OriGene Custom Immunoassay Development | | |
| |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SYNGR2 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing SYNGR2 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SYNGR2 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SYNGR2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SYNGR2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SYNGR2 |
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SYNGR2 |
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