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Aliases for SYNE1-AS1 Gene

Subcategory (RNA class) for SYNE1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SYNE1-AS1 Gene

  • SYNE1 Antisense RNA 1 2 3 5
  • SYNE1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SYNE1-AS1 Gene

Previous GeneCards Identifiers for SYNE1-AS1 Gene

  • GC06P152703

Summaries for SYNE1-AS1 Gene

GeneCards Summary for SYNE1-AS1 Gene

SYNE1-AS1 (SYNE1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SYNE1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYNE1-AS1 Gene

Genomics for SYNE1-AS1 Gene

GeneHancer (GH) Regulatory Elements for SYNE1-AS1 Gene

Promoters and enhancers for SYNE1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I152377 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 550.8 -0.4 -435 4.5 FOXA2 SIN3A FEZF1 DNMT3B ZNF48 ETS1 YY1 ZNF335 ATF7 FOS SYNE1-AS1 GC06P152365 SYNE1
GH06I152356 Enhancer 0.5 Ensembl 12 -23.8 -23829 0.2 CTCF ZNF654 FOXA2 RAD21 MIXL1 SYNE1-AS1 SYNE1 GC06P152365 ENSG00000284615
GH06I152368 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -11.3 -11253 1.3 POLR2A HLF CEBPB ZBTB33 GC06P152365 SYNE1-AS1 SYNE1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SYNE1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SYNE1-AS1 Gene

Genomic Locations for SYNE1-AS1 Gene
chr6:152,380,530-152,381,713
(GRCh38/hg38)
Size:
1,184 bases
Orientation:
Plus strand
chr6:152,701,665-152,702,848
(GRCh37/hg19)

Genomic View for SYNE1-AS1 Gene

Genes around SYNE1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SYNE1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SYNE1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYNE1-AS1 Gene

Proteins for SYNE1-AS1 Gene

Post-translational modifications for SYNE1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SYNE1-AS1 Gene

Domains & Families for SYNE1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SYNE1-AS1 Gene

Function for SYNE1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SYNE1-AS1 Gene

Localization for SYNE1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SYNE1-AS1 Gene

Pathways & Interactions for SYNE1-AS1 Gene

SuperPathways for SYNE1-AS1 Gene

No Data Available

Interacting Proteins for SYNE1-AS1 Gene

Gene Ontology (GO) - Biological Process for SYNE1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SYNE1-AS1 Gene

Drugs & Compounds for SYNE1-AS1 Gene

No Compound Related Data Available

Transcripts for SYNE1-AS1 Gene

mRNA/cDNA for SYNE1-AS1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SYNE1-AS1 Gene

SYNE1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SYNE1-AS1 Gene

No ASD Table

Relevant External Links for SYNE1-AS1 Gene

GeneLoc Exon Structure for
SYNE1-AS1
ECgene alternative splicing isoforms for
SYNE1-AS1

Expression for SYNE1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SYNE1-AS1 Gene

SOURCE GeneReport for Unigene cluster for SYNE1-AS1 Gene:

Hs.571203
genes like me logo Genes that share expression patterns with SYNE1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SYNE1-AS1 Gene

Orthologs for SYNE1-AS1 Gene

Evolution for SYNE1-AS1 Gene

ENSEMBL:
Gene Tree for SYNE1-AS1 (if available)
TreeFam:
Gene Tree for SYNE1-AS1 (if available)

No data available for Orthologs for SYNE1-AS1 Gene

Paralogs for SYNE1-AS1 Gene

No data available for Paralogs for SYNE1-AS1 Gene

Variants for SYNE1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SYNE1-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs119103243 pathogenic, Spinocerebellar ataxia, autosomal recessive 8 152,381,320(+) T/A non_coding_transcript_variant
rs146424389 conflicting-interpretations-of-pathogenicity, likely-benign, not specified, Emery-Dreifuss muscular dystrophy, Cerebellar ataxia, Emery-Dreifuss muscular dystrophy 4, autosomal dominant, Spinocerebellar ataxia, autosomal recessive 8 152,381,042(+) C/G/T intron_variant
rs570962334 uncertain-significance, Emery-Dreifuss muscular dystrophy 4, autosomal dominant, Spinocerebellar ataxia, autosomal recessive 8 152,381,127(+) G/T non_coding_transcript_variant
rs756300560 uncertain-significance, not specified, Emery-Dreifuss muscular dystrophy 4, autosomal dominant, Spinocerebellar ataxia, autosomal recessive 8 152,381,176(+) G/C/T non_coding_transcript_variant
rs886042954 pathogenic, Spinocerebellar ataxia, autosomal recessive 8 152,381,149(+) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SYNE1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1015648 CNV loss 25217958
nsv1032029 CNV loss 25217958

Additional Variant Information for SYNE1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SYNE1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SYNE1-AS1 Gene

Disorders for SYNE1-AS1 Gene

Additional Disease Information for SYNE1-AS1

No disorders were found for SYNE1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SYNE1-AS1 Gene

Publications for SYNE1-AS1 Gene

No publications were found for SYNE1-AS1 Gene.

Products for SYNE1-AS1 Gene

Sources for SYNE1-AS1 Gene

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