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Aliases for SYNE1-AS1 Gene

Subcategory (RNA class) for SYNE1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SYNE1-AS1 Gene

  • SYNE1 Antisense RNA 1 2 3 5
  • SYNE1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SYNE1-AS1 Gene

Previous GeneCards Identifiers for SYNE1-AS1 Gene

  • GC06P152703

Summaries for SYNE1-AS1 Gene

GeneCards Summary for SYNE1-AS1 Gene

SYNE1-AS1 (SYNE1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYNE1-AS1 Gene

Genomics for SYNE1-AS1 Gene

Regulatory Elements for SYNE1-AS1 Gene

Enhancers for SYNE1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F152356 0.6 Ensembl 12 -23.8 -23830 0.2 CTCF ZNF654 RAD21 MIXL1 SYNE1-AS1 SYNE1 GC06P152365 PIR34901
GH06F152377 0.2 ENCODE 0.8 -0.4 -435 4.5 TBP SIN3A FEZF1 ZNF48 RAD21 DNMT3B YY1 FOS ZNF654 REST SYNE1-AS1 GC06P152365
GH06F152368 0.6 Ensembl ENCODE 0.4 -11.3 -11254 1.3 SMARCA4 POLR2A HLF CEBPB ZBTB33 GC06P152365 SYNE1-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SYNE1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SYNE1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001231045 -130 3201 TBP SIN3A FEZF1 ZNF48 RAD21 DNMT3B YY1 FOS ZNF654 REST

Genomic Location for SYNE1-AS1 Gene

Chromosome:
6
Start:
152,380,530 bp from pter
End:
152,381,713 bp from pter
Size:
1,184 bases
Orientation:
Plus strand

Genomic View for SYNE1-AS1 Gene

Genes around SYNE1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SYNE1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SYNE1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYNE1-AS1 Gene

Proteins for SYNE1-AS1 Gene

Post-translational modifications for SYNE1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SYNE1-AS1 Gene

Domains & Families for SYNE1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SYNE1-AS1 Gene

Function for SYNE1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SYNE1-AS1 Gene

Localization for SYNE1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SYNE1-AS1 Gene

Pathways & Interactions for SYNE1-AS1 Gene

SuperPathways for SYNE1-AS1 Gene

No Data Available

Interacting Proteins for SYNE1-AS1 Gene

Gene Ontology (GO) - Biological Process for SYNE1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SYNE1-AS1 Gene

Transcripts for SYNE1-AS1 Gene

mRNA/cDNA for SYNE1-AS1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SYNE1-AS1 Gene

SYNE1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SYNE1-AS1 Gene

No ASD Table

Relevant External Links for SYNE1-AS1 Gene

GeneLoc Exon Structure for
SYNE1-AS1
ECgene alternative splicing isoforms for
SYNE1-AS1

Expression for SYNE1-AS1 Gene

mRNA expression in normal human tissues for SYNE1-AS1 Gene

SOURCE GeneReport for Unigene cluster for SYNE1-AS1 Gene:

Hs.571203
genes like me logo Genes that share expression patterns with SYNE1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SYNE1-AS1 Gene

Orthologs for SYNE1-AS1 Gene

Evolution for SYNE1-AS1 Gene

ENSEMBL:
Gene Tree for SYNE1-AS1 (if available)
TreeFam:
Gene Tree for SYNE1-AS1 (if available)

No data available for Orthologs for SYNE1-AS1 Gene

Paralogs for SYNE1-AS1 Gene

No data available for Paralogs for SYNE1-AS1 Gene

Variants for SYNE1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SYNE1-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs119103243 Pathogenic 152,381,320(-) TCAGC(A/T)GAGTG nc-transcript-variant, reference, stop-gained
rs114488001 -- 152,379,313(+) CAAAG(C/G)TAATA intron-variant, upstream-variant-2KB
rs114499022 -- 152,379,776(+) TCTCA(C/T)GTATA intron-variant, upstream-variant-2KB
rs115792796 -- 152,381,813(+) ATCAC(A/C)CTTCC intron-variant, downstream-variant-500B
rs115807691 -- 152,380,518(+) ATTCA(A/G)GAACA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SYNE1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1015648 CNV loss 25217958
nsv1032029 CNV loss 25217958

Relevant External Links for SYNE1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SYNE1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SYNE1-AS1 Gene

Disorders for SYNE1-AS1 Gene

Relevant External Links for SYNE1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SYNE1-AS1

No disorders were found for SYNE1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SYNE1-AS1 Gene

Publications for SYNE1-AS1 Gene

No publications were found for SYNE1-AS1 Gene.

Products for SYNE1-AS1 Gene

Sources for SYNE1-AS1 Gene

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