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Aliases for SYDE2 Gene

Aliases for SYDE2 Gene

  • Synapse Defective 1, Rho GTPase, Homolog 2 (C. Elegans) 2 3
  • Synapse Defective Protein 1 Homolog 2 4
  • Protein Syd-1 Homolog 2 4

External Ids for SYDE2 Gene

Previous GeneCards Identifiers for SYDE2 Gene

  • GC01M085338
  • GC01M085623
  • GC01M083733

Summaries for SYDE2 Gene

GeneCards Summary for SYDE2 Gene

SYDE2 (Synapse Defective 1, Rho GTPase, Homolog 2 (C. Elegans)) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Rho GTPase cycle. An important paralog of this gene is ABR.

UniProtKB/Swiss-Prot for SYDE2 Gene

  • GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYDE2 Gene

Genomics for SYDE2 Gene

Regulatory Elements for SYDE2 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SYDE2 Gene

Start:
85,156,873 bp from pter
End:
85,201,609 bp from pter
Size:
44,737 bases
Orientation:
Minus strand

Genomic View for SYDE2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SYDE2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYDE2 Gene

Proteins for SYDE2 Gene

  • Protein details for SYDE2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VT97-SYDE2_HUMAN
    Recommended name:
    Rho GTPase-activating protein SYDE2
    Protein Accession:
    Q5VT97
    Secondary Accessions:
    • Q5VT96
    • Q8NDB8
    • Q9H8A6

    Protein attributes for SYDE2 Gene

    Size:
    1194 amino acids
    Molecular mass:
    133230 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB14711.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB14711.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305}; Sequence=CAH72669.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAH72670.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for SYDE2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SYDE2 Gene

Proteomics data for SYDE2 Gene at MOPED

Post-translational modifications for SYDE2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SYDE2 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for SYDE2 Gene

Domains for SYDE2 Gene

Protein Domains for SYDE2 Gene

Suggested Antigen Peptide Sequences for SYDE2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5VT97

UniProtKB/Swiss-Prot:

SYDE2_HUMAN :
  • Q5VT97
Domain:
  • Contains 1 C2 domain.
  • Contains 1 Rho-GAP domain.
genes like me logo Genes that share domains with SYDE2: view

No data available for Gene Families for SYDE2 Gene

Function for SYDE2 Gene

Molecular function for SYDE2 Gene

UniProtKB/Swiss-Prot Function: GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.

Gene Ontology (GO) - Molecular Function for SYDE2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005096 GTPase activator activity ISS --
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with SYDE2: view

Phenotypes for SYDE2 Gene

GenomeRNAi human phenotypes for SYDE2:
genes like me logo Genes that share phenotypes with SYDE2: view

Animal Model Products

CRISPR Products

miRNA for SYDE2 Gene

miRTarBase miRNAs that target SYDE2

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SYDE2

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for SYDE2 Gene

Localization for SYDE2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SYDE2 Gene COMPARTMENTS Subcellular localization image for SYDE2 gene
Compartment Confidence
cytosol 4
nucleus 2
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for SYDE2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with SYDE2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for SYDE2 Gene

Pathways for SYDE2 Gene

genes like me logo Genes that share pathways with SYDE2: view

Pathways by source for SYDE2 Gene

Gene Ontology (GO) - Biological Process for SYDE2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction --
GO:0007264 small GTPase mediated signal transduction TAS --
GO:0051056 regulation of small GTPase mediated signal transduction TAS --
GO:0090630 activation of GTPase activity ISS --
genes like me logo Genes that share ontologies with SYDE2: view

Transcripts for SYDE2 Gene

mRNA/cDNA for SYDE2 Gene

(2) Selected AceView cDNA sequences:
(8) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SYDE2 Gene

Synapse defective 1, Rho GTPase, homolog 2 (C. elegans):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SYDE2

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SYDE2
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SYDE2 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b ^ 4
SP1: - -
SP2:
SP3: -

Relevant External Links for SYDE2 Gene

GeneLoc Exon Structure for
SYDE2
ECgene alternative splicing isoforms for
SYDE2

Expression for SYDE2 Gene

mRNA expression in normal human tissues for SYDE2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SYDE2 Gene

This gene is overexpressed in Colon - Sigmoid (5.9) and Esophagus - Muscularis (4.8).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for SYDE2 Gene

SOURCE GeneReport for Unigene cluster for SYDE2 Gene Hs.670497

genes like me logo Genes that share expressions with SYDE2: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for SYDE2 Gene

Orthologs for SYDE2 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SYDE2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SYDE2 35
  • 99.11 (n)
  • 98.66 (a)
SYDE2 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SYDE2 35
  • 88.63 (n)
  • 84.42 (a)
SYDE2 36
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SYDE2 35
  • 88.11 (n)
  • 83.94 (a)
SYDE2 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Syde2 35
  • 79.38 (n)
  • 76.45 (a)
Syde2 16
Syde2 36
  • 68 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SYDE2 36
  • 60 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SYDE2 36
  • 72 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Syde2 35
  • 77.85 (n)
  • 74.32 (a)
chicken
(Gallus gallus)
Aves SYDE2 35
  • 68.8 (n)
  • 67.86 (a)
SYDE2 36
  • 66 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SYDE2 36
  • 56 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia syde2 35
  • 66.91 (n)
  • 64.79 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC100333199 35
  • 61.12 (n)
  • 67.15 (a)
SYDE2 36
  • 68 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta RhoGAP100F 36
  • 15 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea syd-1 36
  • 17 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes BEM2 36
  • 9 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.767 36
  • 27 (a)
OneToMany
Species with no ortholog for SYDE2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SYDE2 Gene

ENSEMBL:
Gene Tree for SYDE2 (if available)
TreeFam:
Gene Tree for SYDE2 (if available)

Paralogs for SYDE2 Gene

Paralogs for SYDE2 Gene

genes like me logo Genes that share paralogs with SYDE2: view

Variants for SYDE2 Gene

Sequence variations from dbSNP and Humsavar for SYDE2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs3364 -- 85,175,752(+) TCACT(A/G)GCTAA intron-variant, utr-variant-3-prime
rs709785 -- 85,158,323(+) AGTGA(C/G)CTGAG utr-variant-3-prime, downstream-variant-500B
rs709786 - 85,158,866(+) CTCAA(C/T)TGTCT missense, reference, downstream-variant-500B
rs709787 -- 85,166,107(+) AGGCC(A/G)AGGCA intron-variant
rs817411 -- 85,158,176(+) agttc(A/G)agacc utr-variant-3-prime, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SYDE2 Gene

Variant ID Type Subtype PubMed ID
esv34165 CNV Loss 18971310
nsv830459 CNV Loss 17160897
esv23473 CNV Loss 19812545

Relevant External Links for SYDE2 Gene

HapMap Linkage Disequilibrium report
SYDE2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SYDE2 Gene

Disorders for SYDE2 Gene

No disorders were found for SYDE2 Gene.

No data available for UniProtKB/Swiss-Prot for SYDE2 Gene

Publications for SYDE2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Broad spectrum identification of SUMO substrates in melanoma cells. (PMID: 17549794) Ganesan A.K. … White M.A. (Proteomics 2007) 3
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4
  4. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4
  5. A quantitative atlas of mitotic phosphorylation. (PMID: 18669648) Dephoure N. … Gygi S.P. (Proc. Natl. Acad. Sci. U.S.A. 2008) 4

Products for SYDE2 Gene

Sources for SYDE2 Gene

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