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Aliases for SYCP2 Gene

Aliases for SYCP2 Gene

  • Synaptonemal Complex Protein 2 2 3
  • SCP2 3 4 6
  • Synaptonemal Complex Lateral Element Protein 3 4
  • HsSCP2 3 4
  • SCP-2 3 4

External Ids for SYCP2 Gene

Previous GeneCards Identifiers for SYCP2 Gene

  • GC20M058167
  • GC20M059077
  • GC20M059124
  • GC20M057872
  • GC20M058438
  • GC20M055225

Summaries for SYCP2 Gene

Entrez Gene Summary for SYCP2 Gene

  • The synaptonemal complex is a proteinaceous structure that links homologous chromosomes during the prophase of meiosis. The protein encoded by this gene is a major component of the synaptonemal complex and may bind DNA at scaffold attachment regions. The encoded protein requires synaptonemal complex protein 3, but not 1, for inclusion in the synaptonemal complex. [provided by RefSeq, Jul 2008]

GeneCards Summary for SYCP2 Gene

SYCP2 (Synaptonemal Complex Protein 2) is a Protein Coding gene. Among its related pathways are Cell Cycle, Mitotic and Metabolism. GO annotations related to this gene include protein heterodimerization activity. An important paralog of this gene is SYCP2L.

UniProtKB/Swiss-Prot for SYCP2 Gene

  • Major component of the axial/lateral elements of synaptonemal complexes (SCS) during meiotic prophase. May be involved in the organization of chromatin by temporarily binding to DNA scaffold attachment regions. Requires SYCP3, but not SYCP1, in order to be incorporated into the axial/lateral elements (By similarity).

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYCP2 Gene

Genomics for SYCP2 Gene

Regulatory Elements for SYCP2 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SYCP2 Gene

Start:
59,863,557 bp from pter
End:
59,933,655 bp from pter
Size:
70,099 bases
Orientation:
Minus strand

Genomic View for SYCP2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SYCP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYCP2 Gene

Proteins for SYCP2 Gene

  • Protein details for SYCP2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BX26-SYCP2_HUMAN
    Recommended name:
    Synaptonemal complex protein 2
    Protein Accession:
    Q9BX26
    Secondary Accessions:
    • A2RUE5
    • O75763
    • Q5JX11
    • Q9NTX8
    • Q9UG27

    Protein attributes for SYCP2 Gene

    Size:
    1530 amino acids
    Molecular mass:
    175639 Da
    Quaternary structure:
    • Heterodimer with SYCP3. Interacts with SYCP3, SMC1A and SMC3. Interacts with TEX11 (By similarity).

neXtProt entry for SYCP2 Gene

Proteomics data for SYCP2 Gene at MOPED

Post-translational modifications for SYCP2 Gene

Other Protein References for SYCP2 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for SYCP2 Gene

Domains for SYCP2 Gene

Protein Domains for SYCP2 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q9BX26

UniProtKB/Swiss-Prot:

SYCP2_HUMAN :
  • Q9BX26
Family:
  • Belongs to the SYCP2 family.
genes like me logo Genes that share domains with SYCP2: view

No data available for Gene Families for SYCP2 Gene

Function for SYCP2 Gene

Molecular function for SYCP2 Gene

GENATLAS Biochemistry: synaptonemal complex protein 2,axial element homolog to mouse Scp2,DNA binding protein,involved in the structural organization of meiotic prophase chromosomes
UniProtKB/Swiss-Prot Function: Major component of the axial/lateral elements of synaptonemal complexes (SCS) during meiotic prophase. May be involved in the organization of chromatin by temporarily binding to DNA scaffold attachment regions. Requires SYCP3, but not SYCP1, in order to be incorporated into the axial/lateral elements (By similarity).

Gene Ontology (GO) - Molecular Function for SYCP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding NAS 10341103
GO:0005515 protein binding --
GO:0046982 protein heterodimerization activity IEA --
genes like me logo Genes that share ontologies with SYCP2: view

Phenotypes for SYCP2 Gene

genes like me logo Genes that share phenotypes with SYCP2: view

Animal Models for SYCP2 Gene

MGI Knock Outs for SYCP2:

Animal Model Products

CRISPR Products

miRNA for SYCP2 Gene

miRTarBase miRNAs that target SYCP2

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SYCP2

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for SYCP2 Gene

Localization for SYCP2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SYCP2 Gene

Nucleus. Chromosome. Note=In axial/lateral elements of the tripartite segments of synaptonemal complexes. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SYCP2 Gene COMPARTMENTS Subcellular localization image for SYCP2 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for SYCP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000795 synaptonemal complex NAS 10341103
GO:0000800 lateral element IEA --
GO:0005634 nucleus NAS 10341103
genes like me logo Genes that share ontologies with SYCP2: view

Pathways for SYCP2 Gene

genes like me logo Genes that share pathways with SYCP2: view

PCR Array Products

Gene Ontology (GO) - Biological Process for SYCP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007130 synaptonemal complex assembly NAS 10341103
GO:0007140 male meiosis IEA --
GO:0007143 female meiotic division IEA --
GO:0009566 fertilization IEA --
GO:0009887 organ morphogenesis --
genes like me logo Genes that share ontologies with SYCP2: view

Transcripts for SYCP2 Gene

Unigene Clusters for SYCP2 Gene

Synaptonemal complex protein 2:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SYCP2

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SYCP2

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SYCP2 Gene

No ASD Table

Relevant External Links for SYCP2 Gene

GeneLoc Exon Structure for
SYCP2
ECgene alternative splicing isoforms for
SYCP2

Expression for SYCP2 Gene

mRNA expression in normal human tissues for SYCP2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SYCP2 Gene

This gene is overexpressed in Testis (10.4).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SYCP2 Gene

SOURCE GeneReport for Unigene cluster for SYCP2 Gene Hs.202676

genes like me logo Genes that share expressions with SYCP2: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for SYCP2 Gene

Orthologs for SYCP2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SYCP2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SYCP2 35
  • 99.24 (n)
  • 98.43 (a)
SYCP2 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SYCP2 35
  • 84.94 (n)
  • 75.54 (a)
SYCP2 36
  • 74 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SYCP2 35
  • 85.17 (n)
  • 75.78 (a)
SYCP2 36
  • 75 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sycp2 35
  • 77.91 (n)
  • 64.79 (a)
Sycp2 16
Sycp2 36
  • 64 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SYCP2 36
  • 51 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 51 (a)
OneToMany
-- 36
  • 35 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Sycp2 35
  • 77.76 (n)
  • 65.2 (a)
chicken
(Gallus gallus)
Aves SYCP2 35
  • 58.15 (n)
  • 42.01 (a)
SYCP2 36
  • 38 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SYCP2 36
  • 44 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia sycp2 35
  • 54.54 (n)
  • 40.54 (a)
zebrafish
(Danio rerio)
Actinopterygii sycp2 36
  • 15 (a)
OneToOne
Species with no ortholog for SYCP2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SYCP2 Gene

ENSEMBL:
Gene Tree for SYCP2 (if available)
TreeFam:
Gene Tree for SYCP2 (if available)

Paralogs for SYCP2 Gene

Paralogs for SYCP2 Gene

Selected SIMAP similar genes for SYCP2 Gene using alignment to 6 proteins:

Pseudogenes.org Pseudogenes for SYCP2 Gene

genes like me logo Genes that share paralogs with SYCP2: view

Variants for SYCP2 Gene

Sequence variations from dbSNP and Humsavar for SYCP2 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs964732 -- 59,927,593(-) GGATG(A/G)TTCTT intron-variant
rs1327467 -- 59,863,197(-) gactc(C/T)taaat downstream-variant-500B
rs1327469 -- 59,867,946(+) CGAAT(A/C)TATGT intron-variant
rs1359836 - 59,895,534(-) GAAAC(C/T)TAGTG reference, missense
rs2069110 -- 59,865,029(+) CCACT(A/G)AACTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SYCP2 Gene

Variant ID Type Subtype PubMed ID
dgv4583n71 CNV Loss 21882294
nsv912968 CNV Loss 21882294
dgv4584n71 CNV Loss 21882294

Relevant External Links for SYCP2 Gene

HapMap Linkage Disequilibrium report
SYCP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SYCP2 Gene

Disorders for SYCP2 Gene

Relevant External Links for SYCP2

Genetic Association Database (GAD)
SYCP2
Human Genome Epidemiology (HuGE) Navigator
SYCP2
genes like me logo Genes that share disorders with SYCP2: view

No data available for UniProtKB/Swiss-Prot for SYCP2 Gene

Publications for SYCP2 Gene

  1. Isolation and characterization of the human SCP2 cDNA and chromosomal localization of the gene. (PMID: 10341103) Schalk J.A. … Heyting C. (Mamm. Genome 1999) 2 3 4
  2. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
  3. Evaluation of 172 candidate polymorphisms for association with oligozoospermia or azoospermia in a large cohort of men of European descent. (PMID: 20378615) Aston K.I. … Carrell D.T. (Hum. Reprod. 2010) 3 48
  4. SCP2: a major protein component of the axial elements of synaptonemal complexes of the rat. (PMID: 9592139) Offenberg H.H. … Heyting C. (Nucleic Acids Res. 1998) 2 3
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for SYCP2 Gene

Sources for SYCP2 Gene

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