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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

SYCE3 Gene

protein-coding GIFtS: 34
GCID: GC22M050990

synaptonemal complex central element protein 3

(Previous name: chromosome 22 open reading frame 41 )
(Previous symbol: C22orf41)

Search for SYCE3
in

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Synaptonemal Complex Central Element Protein 3¹ ²		Chromosome 22 Open Reading Frame 41¹
C22orf41¹ ² ³		Testis Highly Expressed Protein 2²
Testis Highly Expressed Gene 2 Protein² ³		THEG-2³
THEG2² ³

External Ids:	HGNC: 35245¹	Entrez Gene: 644186²	Ensembl: ENSG00000217442⁷	UniProtKB: A1L190³

Export aliases for SYCE3 gene to outside databases

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: SYCE3_HUMAN, A1L190

Function: Major component of the transverse central element of synaptonemal complexes (SCS), formed between homologous

chromosomes during meiotic prophase. Required for chromosome loading of the central element-specific SCS proteins, and

for initiating synapsis between homologous chromosomes. Chromosome loading appears to require SYCP1. Required for

fertility (By similarity)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000022.10 NC_018933.1 NT_011526.7

Regulatory elements:

Search SABiosciences Regulatory transcription factor binding sites for SYCE3
Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids

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Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SYCE3

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 22q13.33 Ensembl cytogenetic band: 22q13.33 HGNC cytogenetic band: 22q13.33

SYCE3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SYCE3 gene location

GeneLoc information about chromosome 22 GeneLoc Exon Structure

GeneLoc location for GC22M050990: view genomic region (about GC identifiers)

Start:	50,989,541 bp from pter	End:	51,001,334 bp from pter
Size:	11,794 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: SYCE3_HUMAN, A1L190 (See protein sequence)

Recommended Name: Synaptonemal complex central element protein 3

Size: 88 amino acids; 10601 Da

Subunit: Interacts with SYCE1 and SYCE2 (By similarity)

Subcellular location: Nucleus (By similarity). Chromosome (By similarity). Note=Colocalizes with SYCE1 in the central

elements (By similarity)

Explore the universe of human proteins at neXtProt for SYCE3: NX_A1L190

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_A1L190

SYCE3 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_001116697.1

ENSEMBL proteins:

ENSP00000385480 ENSP00000385122

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Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000801	central element	ISS	--
GO:0005634	nucleus	ISS	--
GO:0005694	chromosome	ISS	--

SYCE3 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ProtoNet protein and cluster: A1L190

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: SYCE3_HUMAN, A1L190

Function: Major component of the transverse central element of synaptonemal complexes (SCS), formed between homologous

chromosomes during meiotic prophase. Required for chromosome loading of the central element-specific SCS proteins, and

for initiating synapsis between homologous chromosomes. Chromosome loading appears to require SYCP1. Required for

fertility (By similarity)

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Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005515	protein binding	--	--

SYCE3 for ontologies           About GeneDecksing

Animal Models:
     Mouse knock-out Syce3^tm1Rben for SYCE3
     2 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Syce3):

endocrine/exocrine gland

reproductive system

SYCE3 for phenotypes About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for SYCE3

STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

2 Interacting proteins for SYCE3 (ENSP00000385122⁴) via UniProtKB, MINT, STRING, and/or I2D

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
SYCE2	ENSP00000293695⁴	STRING: ENSP00000293695
SYCE1	ENSP00000341282⁴	STRING: ENSP00000341282

About this table

Gene Ontology (GO): 5 biological process terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006915	apoptotic process	ISS	--
GO:0007130	synaptonemal complex assembly	ISS	--
GO:0007131	reciprocal meiotic recombination	ISS	--
GO:0007283	spermatogenesis	ISS	--
GO:0051301	cell division	IEA	--

SYCE3 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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About This Section

REFSEQ mRNAs for SYCE3 gene:

NM_001123225.1

Unigene Cluster for SYCE3:

Synaptonemal complex central element protein 3

Hs.535660 [show with all ESTs]

Unigene Representative Sequence: HY226834

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000406915(uc003bmj.4 uc010hbe.3) ENST00000402753

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Additional cDNA sequence:

BC127859.1 BC127860.1 EU082028.1

2 DOTS entries:

DT.408460 DT.120664574

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

SYCE3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AATAGCTGTA

About this image

SYCE3 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

Stem Cell Differentiation: 1 LifeMap Cell

Name

Category

Epiblast-like cells (Reconstitution of mo...)

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See SYCE3 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for SYCE3

SOURCE GeneReport for Unigene cluster: Hs.535660

SABiosciences Custom PCR Arrays for SYCE3

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for SYCE3 gene from 3/7 species (see all 7) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Syce3^{1 , 5}	synaptonemal complex central element protein 3^{1, 5}	86.97(n)¹ 90.8(a)¹		15 (44.87 cM)⁵ 75459¹ NM_001162880.1¹ NP_001156352.1¹ 89390174⁵
chicken (Gallus gallus)	Aves	SYCE3¹	synaptonemal complex central element protein 3	75.31(n) 79.01(a)		769096 XM_001231856.2 XP_001231857.1
zebrafish (Danio rerio)	Actinopterygii	zgc:194246⁶	zgc:194246	31(a)	1 ↔ 1	14(35642420-35643512)

ENSEMBL Gene Tree for SYCE3 (if available)
TreeFam Gene Tree for SYCE3 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 22 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs148832643^1,2		--	50990018(+)	`CTACAA/GACATC`	1	--	int¹		0	--	--	--	--
rs11330741^1,2	C,	--	50990071(+)	`ATACAC/-CAGAC`	1	--	int¹		1		CSA	2
rs11427965^1,2	C,	--	50990081(+)	`TGATG-/TTAAAA`	1	--	int¹		0	--	--	--	--
rs60414910^1,2	F,	--	50990086(+)	`TGTAAA/GAAACT`	1	--	int¹		1		WA	118
rs200777552^1,2		--	50990086(+)	`GTAAA-/GAAACT`	1	--	int¹		0	--	--	--	--
rs186249806^1,2		--	50990125(+)	`AGAATC/TAGAGC`	1	--	int¹		0	--	--	--	--
rs190081005^1,2		--	50990178(+)	`TGCAGA/GTGACC`	1	--	int¹		0	--	--	--	--
rs73891280^1,2	C,	--	50990216(+)	`ACACTC/TAGGTA`	1	--	int¹		2		WA	120
rs6520148^1,2	C,F,A,H,	--	50990323(+)	`GCTTTC/TGTTGA`	1	--	int¹		12		NA NS EA WA CSA	666
rs143426581^1,2		--	50990424(+)	`CAACTC/TGAAGG`	1	--	int¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for SYCE3 (50989541 - 51001334 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for SYCE3: --

SABiosciences Cancer Mutation PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for SYCE3 gene integrated from 9 sources:
(articles sorted by number of sources associating them with SYCE3)

Utopia: connect your pdf to the dynamic
world of online information

A novel mouse synaptonemal complex protein is essenti al for loading of central element proteins, recombination, and fertility. (PubMed id 21637789)^{1, 3} Schramm S....Benavente R. (2011)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
[Cloning and expression of a novel mouse testis gene TSEG-2] (PubMed id 19323366)¹ Wang Z.Y....Jiang G.S. (2009)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)
Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )² Aoki H.... Hino O. (2000)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 644186	HGNC: 35245	Ensembl:ENSG00000217442	euGenes: HUgn644186	ECgene: SYCE3
H-InvDB: SYCE3

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for SYCE3	Pharmacogenomics, SNPs, Pathways

Intellectual Property for SYCE3 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for SYCE3 gene:
Search GeneIP for patents involving SYCE3

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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About This Section


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Recombinant Protein for SYCE3

SYCE3 Proteins, Antibodies, CLIAs, and ELISAs

Search LifeMap BioReagents cell lines for SYCE3

	Gene Synthesis
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	Codon Optimization
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Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for SYCE3

	Browse SwitchGear 3'UTR luciferase reporter plasmids for SYCE3
	Browse SwitchGear Promoter luciferase reporter plasmids for SYCE3

Search ThermoFisher Antibodies for SYCE3

Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SYCE3

GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
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The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

The GeneCards Human Gene Database

Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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SYCE3 Gene

synaptonemal complex central element protein 3

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Export list of displayed genes

SYCE3 Gene

synaptonemal complex central element protein 3

Aliasesfor SYCE3 gene

Summariesfor SYCE3 gene

Genomic Viewsfor SYCE3 gene

Proteinsfor SYCE3 gene

Protein Domains /Familiesfor SYCE3 gene

Functionfor SYCE3 gene

Pathways & Interactionsfor SYCE3 gene

Drugs & Compoundsfor SYCE3 gene

Transcriptsfor SYCE3 gene

Expression for SYCE3 gene

Orthologsfor SYCE3 gene

Paralogsfor SYCE3 gene

Genomic Variantsfor SYCE3 gene

Disorders / Diseasesfor SYCE3 gene

Publicationsfor SYCE3 gene

External Searches for SYCE3 gene

Genome Databases showing SYCE3 gene

Other Databases showing SYCE3 gene

Specialized Databases showing SYCE3 gene

Intellectual Propertyfor SYCE3 gene

Productsfor SYCE3 gene

View Random Gene

Aliases
for SYCE3 gene

Summaries
for SYCE3 gene

Genomic Views
for SYCE3 gene

Proteins
for SYCE3 gene

Protein Domains /
Families
for SYCE3 gene

Function
for SYCE3 gene

Pathways & Interactions
for SYCE3 gene

Drugs & Compounds
for SYCE3 gene

Transcripts
for SYCE3 gene

Expression
for SYCE3 gene

Orthologs
for SYCE3 gene

Paralogs
for SYCE3 gene

Genomic Variants
for SYCE3 gene

Disorders / Diseases
for SYCE3 gene

Publications
for SYCE3 gene

Intellectual Property
for SYCE3 gene

Products
for SYCE3 gene