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Aliases for SYCE1L Gene

Aliases for SYCE1L Gene

  • Synaptonemal Complex Central Element Protein 1-Like 2 3
  • Meiosis-Related Protein 2 3 4
  • MRP2 3

External Ids for SYCE1L Gene

Summaries for SYCE1L Gene

GeneCards Summary for SYCE1L Gene

SYCE1L (Synaptonemal Complex Central Element Protein 1-Like) is a Protein Coding gene. An important paralog of this gene is SYCE1.

UniProtKB/Swiss-Prot for SYCE1L Gene

  • May be involved in meiosis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYCE1L Gene

Genomics for SYCE1L Gene

Genomic Location for SYCE1L Gene

Start:
77,199,397 bp from pter
End:
77,213,215 bp from pter
Size:
13,819 bases
Orientation:
Plus strand

Genomic View for SYCE1L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SYCE1L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYCE1L Gene

No data available for Regulatory Elements for SYCE1L Gene

Proteins for SYCE1L Gene

  • Protein details for SYCE1L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MT33-SYC1L_HUMAN
    Recommended name:
    Synaptonemal complex central element protein 1-like
    Protein Accession:
    A8MT33
    Secondary Accessions:
    • A6NF23

    Protein attributes for SYCE1L Gene

    Size:
    242 amino acids
    Molecular mass:
    27397 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SYCE1L Gene

Proteomics data for SYCE1L Gene at MOPED

Post-translational modifications for SYCE1L Gene

No Post-translational modifications

Other Protein References for SYCE1L Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SYCE1L Gene

Domains for SYCE1L Gene

Protein Domains for SYCE1L Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

SYC1L_HUMAN
Family:
  • Belongs to the SYCE family.:
    • A8MT33
genes like me logo Genes that share domains with SYCE1L: view

No data available for Gene Families for SYCE1L Gene

Function for SYCE1L Gene

Molecular function for SYCE1L Gene

UniProtKB/Swiss-Prot Function: May be involved in meiosis.

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SYCE1L Gene

Localization for SYCE1L Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SYCE1L Gene COMPARTMENTS Subcellular localization image for SYCE1L gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1

Gene Ontology (GO) - Cellular Components for SYCE1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000795 synaptonemal complex IEA --
genes like me logo Genes that share ontologies with SYCE1L: view

Pathways for SYCE1L Gene

SuperPathways for SYCE1L Gene

No Data Available

Interacting Proteins for SYCE1L Gene

Gene Ontology (GO) - Biological Process for SYCE1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007130 synaptonemal complex assembly IEA --
genes like me logo Genes that share ontologies with SYCE1L: view

No data available for Pathways by source for SYCE1L Gene

Transcripts for SYCE1L Gene

mRNA/cDNA for SYCE1L Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SYCE1L Gene

Synaptonemal complex central element protein 1-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SYCE1L Gene

No ASD Table

Relevant External Links for SYCE1L Gene

GeneLoc Exon Structure for
SYCE1L
ECgene alternative splicing isoforms for
SYCE1L

Expression for SYCE1L Gene

mRNA expression in normal human tissues for SYCE1L Gene

mRNA differential expression in normal tissues according to GTEx for SYCE1L Gene

This gene is overexpressed in Testis (9.8).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SYCE1L Gene

SOURCE GeneReport for Unigene cluster for SYCE1L Gene Hs.734779

genes like me logo Genes that share expressions with SYCE1L: view

Orthologs for SYCE1L Gene

This gene was present in the common ancestor of chordates.

Orthologs for SYCE1L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SYCE1L 36
  • 99.04 (n)
  • 97.52 (a)
SYCE1L 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SYCE1L 36
  • 79.11 (n)
  • 65.24 (a)
SYCE1L 37
  • 56 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LOC100856750 36
  • 84.19 (n)
  • 74.74 (a)
SYCE1L 37
  • 65 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Syce1l 36
  • 71.79 (n)
  • 59.28 (a)
Syce1l 16
Syce1l 37
  • 50 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 32 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Syce1l 36
  • 69.33 (n)
  • 58.4 (a)
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 22 (a)
OneToMany
Species with no ortholog for SYCE1L:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SYCE1L Gene

ENSEMBL:
Gene Tree for SYCE1L (if available)
TreeFam:
Gene Tree for SYCE1L (if available)

Paralogs for SYCE1L Gene

Paralogs for SYCE1L Gene

Selected SIMAP similar genes for SYCE1L Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with SYCE1L: view

Variants for SYCE1L Gene

Sequence variations from dbSNP and Humsavar for SYCE1L Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs1646 -- 77,202,183(-) aacaa(C/T)caaaa intron-variant
rs746036 -- 77,211,342(+) ACTGG(C/T)CCAGA intron-variant
rs755255 -- 77,211,968(-) GAGAC(C/G)CACCC intron-variant
rs1129679 -- 77,202,263(+) gtcaa(A/G/T)atgtc intron-variant
rs1129680 -- 77,202,367(+) ATCTG(A/C)AATTG intron-variant

Relevant External Links for SYCE1L Gene

HapMap Linkage Disequilibrium report
SYCE1L

No data available for Structural Variations from Database of Genomic Variants (DGV) for SYCE1L Gene

Disorders for SYCE1L Gene

No disorders were found for SYCE1L Gene.

No data available for UniProtKB/Swiss-Prot for SYCE1L Gene

Publications for SYCE1L Gene

  1. Identification of a new transcript specifically expressed in mouse spermatocytes: mmrp2. (PMID: 16328886) Gu S. … Guo M. (Mol. Biol. Rep. 2005) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  3. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4

Products for SYCE1L Gene

Sources for SYCE1L Gene

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