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Aliases for SYCE1L Gene

Aliases for SYCE1L Gene

  • Synaptonemal Complex Central Element Protein 1 Like 2 3 5
  • Meiosis-Related Protein 2 3 4
  • Synaptonemal Complex Central Element Protein 1-Like 2 3
  • MRP2 3

External Ids for SYCE1L Gene

Previous GeneCards Identifiers for SYCE1L Gene

  • GC16P075791
  • GC16P062989

Summaries for SYCE1L Gene

GeneCards Summary for SYCE1L Gene

SYCE1L (Synaptonemal Complex Central Element Protein 1 Like) is a Protein Coding gene. An important paralog of this gene is SYCE1.

UniProtKB/Swiss-Prot for SYCE1L Gene

  • May be involved in meiosis.

Additional gene information for SYCE1L Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYCE1L Gene

Genomics for SYCE1L Gene

Regulatory Elements for SYCE1L Gene

Enhancers for SYCE1L Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H077211 1 ENCODE 65.8 +13.8 13798 2.9 PKNOX1 ATF1 SIN3A GLI4 GLIS2 FOS SP3 YY2 REST ZNF610 SYCE1L MON1B VN2R10P ENSG00000261707
GH16H077190 1.1 ENCODE 43.3 -8.0 -7995 2.6 HDGF PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 SYCE1L MON1B GC16P077193 PIR54148
GH16H077287 1.5 FANTOM5 Ensembl ENCODE dbSUPER 16.1 +90.0 90037 3.4 RFX1 JUN MAX USF2 CEBPB SIN3A REST EP300 JUND POLR2A SYCE1L ENSG00000260922 MON1B ADAMTS18 ENSG00000261063 ENSG00000260701
GH16H077573 0.7 dbSUPER 32.6 +375.8 375752 3 JUN ZFP64 ZNF140 ZNF266 ZNF697 ZNF791 ZNF433 ZNF680 ZC3H11A ZBTB8A SYCE1L NUDT7 LINC02131 LOC105376775
GH16H078183 1.2 Ensembl ENCODE 15.2 +985.2 985230 2.1 PKNOX1 FOXA2 ZSCAN4 INSM2 ZNF76 FEZF1 ZNF2 FOS OVOL3 TSHZ1 SYCE1L ENSG00000261540 ENSG00000279991 WWOX-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SYCE1L on UCSC Golden Path with GeneCards custom track

Genomic Locations for SYCE1L Gene

Genomic Locations for SYCE1L Gene
chr16:77,199,397-77,213,215
(GRCh38/hg38)
Size:
13,819 bases
Orientation:
Plus strand
chr16:77,233,294-77,247,112
(GRCh37/hg19)

Genomic View for SYCE1L Gene

Genes around SYCE1L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SYCE1L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SYCE1L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYCE1L Gene

Proteins for SYCE1L Gene

  • Protein details for SYCE1L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MT33-SYC1L_HUMAN
    Recommended name:
    Synaptonemal complex central element protein 1-like
    Protein Accession:
    A8MT33
    Secondary Accessions:
    • A6NF23

    Protein attributes for SYCE1L Gene

    Size:
    242 amino acids
    Molecular mass:
    27397 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SYCE1L Gene

Post-translational modifications for SYCE1L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SYCE1L Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SYCE1L Gene

Domains & Families for SYCE1L Gene

Gene Families for SYCE1L Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for SYCE1L Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SYCE1L Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A8MT33

UniProtKB/Swiss-Prot:

SYC1L_HUMAN :
  • Belongs to the SYCE family.
Family:
  • Belongs to the SYCE family.
genes like me logo Genes that share domains with SYCE1L: view

Function for SYCE1L Gene

Molecular function for SYCE1L Gene

UniProtKB/Swiss-Prot Function:
May be involved in meiosis.

Phenotypes From GWAS Catalog for SYCE1L Gene

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SYCE1L Gene

Localization for SYCE1L Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SYCE1L gene
Compartment Confidence
cytoskeleton 4
nucleus 4
cytosol 2
extracellular 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Intermediate filaments (4)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for SYCE1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000795 synaptonemal complex IEA --
GO:0045111 intermediate filament cytoskeleton IDA --
genes like me logo Genes that share ontologies with SYCE1L: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for SYCE1L Gene

Pathways & Interactions for SYCE1L Gene

SuperPathways for SYCE1L Gene

No Data Available

Interacting Proteins for SYCE1L Gene

Selected Interacting proteins: A8MT33-SYC1L_HUMAN for SYCE1L Gene via IID

Symbol External ID(s) Details
YWHAZ

Gene Ontology (GO) - Biological Process for SYCE1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007130 synaptonemal complex assembly IEA --
GO:0051321 meiotic cell cycle IEA --
GO:0070193 synaptonemal complex organization IEA --
genes like me logo Genes that share ontologies with SYCE1L: view

No data available for Pathways by source and SIGNOR curated interactions for SYCE1L Gene

Drugs & Compounds for SYCE1L Gene

No Compound Related Data Available

Transcripts for SYCE1L Gene

mRNA/cDNA for SYCE1L Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SYCE1L Gene

Synaptonemal complex central element protein 1-like:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SYCE1L Gene

No ASD Table

Relevant External Links for SYCE1L Gene

GeneLoc Exon Structure for
SYCE1L
ECgene alternative splicing isoforms for
SYCE1L

Expression for SYCE1L Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SYCE1L Gene

mRNA differential expression in normal tissues according to GTEx for SYCE1L Gene

This gene is overexpressed in Testis (x9.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SYCE1L Gene



Protein tissue co-expression partners for SYCE1L Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SYCE1L Gene:

SYCE1L

SOURCE GeneReport for Unigene cluster for SYCE1L Gene:

Hs.734779
genes like me logo Genes that share expression patterns with SYCE1L: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SYCE1L Gene

Orthologs for SYCE1L Gene

This gene was present in the common ancestor of chordates.

Orthologs for SYCE1L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SYCE1L 33 34
  • 99.04 (n)
dog
(Canis familiaris)
Mammalia LOC100856750 33
  • 84.19 (n)
SYCE1L 34
  • 65 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SYCE1L 33 34
  • 79.11 (n)
mouse
(Mus musculus)
Mammalia Syce1l 33 16 34
  • 71.79 (n)
rat
(Rattus norvegicus)
Mammalia Syce1l 33
  • 69.33 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 32 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 22 (a)
OneToMany
Species where no ortholog for SYCE1L was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SYCE1L Gene

ENSEMBL:
Gene Tree for SYCE1L (if available)
TreeFam:
Gene Tree for SYCE1L (if available)

Paralogs for SYCE1L Gene

Paralogs for SYCE1L Gene

(1) SIMAP similar genes for SYCE1L Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with SYCE1L: view

Variants for SYCE1L Gene

Sequence variations from dbSNP and Humsavar for SYCE1L Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000183280 -- 77,201,838(+) TGATA(A/G)GATTA intron-variant
rs1000222090 -- 77,210,997(+) GGGGC(A/C)TGGCA intron-variant
rs1000393159 -- 77,197,799(+) ACCTT(G/T)TACAC intron-variant, upstream-variant-2KB
rs1000427595 -- 77,202,126(+) ATGTT(A/G)AATGG intron-variant
rs1000516510 -- 77,213,316(+) CCCGC(A/T)GACTC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SYCE1L Gene

Variant ID Type Subtype PubMed ID
nsv1065048 CNV gain 25217958
nsv1056676 CNV loss 25217958
nsv1055234 CNV gain 25217958
esv3639164 CNV loss 21293372
esv3582331 CNV loss 25503493
dgv3027n100 CNV gain 25217958

Variation tolerance for SYCE1L Gene

Gene Damage Index Score: 9.83; 89.60% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SYCE1L Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SYCE1L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SYCE1L Gene

Disorders for SYCE1L Gene

Relevant External Links for SYCE1L

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SYCE1L

No disorders were found for SYCE1L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SYCE1L Gene

Publications for SYCE1L Gene

  1. Identification of a new transcript specifically expressed in mouse spermatocytes: mmrp2. (PMID: 16328886) Gu S … Guo M (Molecular biology reports 2005) 2 3 60
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 60
  3. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 4 60

Products for SYCE1L Gene

Sources for SYCE1L Gene

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