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Aliases for SYAP1 Gene

Aliases for SYAP1 Gene

  • Synapse Associated Protein 1 2 3
  • Synapse Associated Protein 1, SAP47 Homolog 3
  • Synapse-Associated Protein 1 3
  • SAP47 Homolog (Drosophila) 2
  • SAP47 Homolog 3
  • PRO3113 3

External Ids for SYAP1 Gene

Summaries for SYAP1 Gene

GeneCards Summary for SYAP1 Gene

SYAP1 (Synapse Associated Protein 1) is a Protein Coding gene.

Gene Wiki entry for SYAP1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SYAP1 Gene

Genomics for SYAP1 Gene

Genomic Location for SYAP1 Gene

Start:
16,719,584 bp from pter
End:
16,765,336 bp from pter
Size:
45,753 bases
Orientation:
Plus strand

Genomic View for SYAP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SYAP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SYAP1 Gene

Regulatory Elements for SYAP1 Gene

Proteins for SYAP1 Gene

  • Protein details for SYAP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96A49-SYAP1_HUMAN
    Recommended name:
    Synapse-associated protein 1
    Protein Accession:
    Q96A49
    Secondary Accessions:
    • Q68CP1
    • Q96C60
    • Q96JQ6
    • Q96T20

    Protein attributes for SYAP1 Gene

    Size:
    352 amino acids
    Molecular mass:
    39933 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAK55531.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for SYAP1 Gene

neXtProt entry for SYAP1 Gene

Proteomics data for SYAP1 Gene at MOPED

Post-translational modifications for SYAP1 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys194 and Lys210
  • Glycosylation at Thr73, Thr79, and Thr82

Other Protein References for SYAP1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SYAP1 Gene

Domains for SYAP1 Gene

Protein Domains for SYAP1 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

SYAP1_HUMAN
Domain:
  • Contains 1 BSD domain.:
    • Q96A49
genes like me logo Genes that share domains with SYAP1: view

No data available for Gene Families for SYAP1 Gene

Function for SYAP1 Gene

Phenotypes for SYAP1 Gene

MGI mutant phenotypes for SYAP1:
inferred from 1 alleles
genes like me logo Genes that share phenotypes with SYAP1: view

miRNA for SYAP1 Gene

miRTarBase miRNAs that target SYAP1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for SYAP1 Gene

Localization for SYAP1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SYAP1 Gene COMPARTMENTS Subcellular localization image for SYAP1 gene
Compartment Confidence
cytosol 2
mitochondrion 2
nucleus 2
golgi apparatus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for SYAP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA --
GO:0005794 Golgi apparatus IDA --
GO:0070062 extracellular exosome IDA 18570454
genes like me logo Genes that share ontologies with SYAP1: view

Pathways for SYAP1 Gene

SuperPathways for SYAP1 Gene

No Data Available

Interacting Proteins for SYAP1 Gene

Gene Ontology (GO) - Biological Process for SYAP1 Gene

None

No data available for Pathways by source for SYAP1 Gene

Transcripts for SYAP1 Gene

mRNA/cDNA for SYAP1 Gene

Unigene Clusters for SYAP1 Gene

Synapse associated protein 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SYAP1 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9a · 9b
SP1:
SP2:
SP3: -
SP4: - - - -
SP5:

Relevant External Links for SYAP1 Gene

GeneLoc Exon Structure for
SYAP1
ECgene alternative splicing isoforms for
SYAP1

Expression for SYAP1 Gene

mRNA expression in normal human tissues for SYAP1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for SYAP1 Gene

SOURCE GeneReport for Unigene cluster for SYAP1 Gene Hs.744256

genes like me logo Genes that share expressions with SYAP1: view

Orthologs for SYAP1 Gene

This gene was present in the common ancestor of animals.

Orthologs for SYAP1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SYAP1 36
  • 99.81 (n)
  • 99.72 (a)
SYAP1 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SYAP1 36
  • 87.78 (n)
  • 87.78 (a)
SYAP1 37
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SYAP1 36
  • 88.92 (n)
  • 90.62 (a)
SYAP1 37
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Syap1 36
  • 83.24 (n)
  • 85.14 (a)
Syap1 16
Syap1 37
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 76 (a)
OneToMany
-- 37
  • 81 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SYAP1 37
  • 68 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Syap1 36
  • 83.23 (n)
  • 86.45 (a)
chicken
(Gallus gallus)
Aves SYAP1 36
  • 77.14 (n)
  • 83 (a)
SYAP1 37
  • 79 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SYAP1 37
  • 75 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia syap1-prov 36
tropical clawed frog
(Silurana tropicalis)
Amphibia MGC75585 36
syap1 36
  • 72.12 (n)
  • 77.68 (a)
zebrafish
(Danio rerio)
Actinopterygii syap1 36
  • 68.38 (n)
  • 70.91 (a)
syap1 37
  • 69 (a)
OneToOne
zgc56150 36
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004273 36
  • 48.03 (n)
  • 37.06 (a)
fruit fly
(Drosophila melanogaster)
Insecta Sap47 36
  • 50.9 (n)
  • 44.4 (a)
Sap47 37
  • 19 (a)
OneToOne
Sap47 38
  • 39 (a)
worm
(Caenorhabditis elegans)
Secernentea C16C2.4 37
  • 22 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.2286 36
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 29 (a)
OneToOne
Species with no ortholog for SYAP1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SYAP1 Gene

ENSEMBL:
Gene Tree for SYAP1 (if available)
TreeFam:
Gene Tree for SYAP1 (if available)

Paralogs for SYAP1 Gene

No data available for Paralogs for SYAP1 Gene

Variants for SYAP1 Gene

Sequence variations from dbSNP and Humsavar for SYAP1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs4330856 -- 16,727,420(+) ctcac(C/T)gcaac intron-variant
rs4342788 -- 16,735,019(+) AAAAA(A/C)AAACA intron-variant
rs4345743 -- 16,755,470(+) TTTTC(G/T)TTTTA intron-variant
rs4439299 -- 16,726,245(+) aatct(A/G)taact intron-variant
rs4487958 -- 16,734,779(+) TCATT(C/T)GAGGC intron-variant

Relevant External Links for SYAP1 Gene

HapMap Linkage Disequilibrium report
SYAP1
Locus Specific Mutation Databases (LSDB)
SYAP1

No data available for Structural Variations from Database of Genomic Variants (DGV) for SYAP1 Gene

Disorders for SYAP1 Gene

No disorders were found for SYAP1 Gene.

No data available for UniProtKB/Swiss-Prot for SYAP1 Gene

Publications for SYAP1 Gene

  1. Gene expression profiling in human fetal liver and identification of tissue- and developmental-stage-specific genes through compiled expression profiles and efficient cloning of full-length cDNAs. (PMID: 11483580) Yu Y. … He F. (Genome Res. 2001) 2 3 4
  2. [Cloning and characterization of syap1, a down regulated gene in human hepatocellular carcinoma]. (PMID: 12549212) Chang Y.C. … Xu Y.H. (Shi Yan Sheng Wu Xue Bao 2001) 3 23
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3 4

Products for SYAP1 Gene

Sources for SYAP1 Gene

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