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Aliases for SVILP1 Gene

Aliases for SVILP1 Gene

  • Supervillin Pseudogene 1 2 3 5

External Ids for SVILP1 Gene

Previous GeneCards Identifiers for SVILP1 Gene

  • GC10P030953

Summaries for SVILP1 Gene

GeneCards Summary for SVILP1 Gene

SVILP1 (Supervillin Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SVILP1 Gene

Genomics for SVILP1 Gene

Regulatory Elements for SVILP1 Gene

Enhancers for SVILP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F030611 1.1 Ensembl ENCODE 17.3 -42.9 -42889 1.6 YBX3 ELF3 TBP ATF1 MLX NFRKB ARID4B THRB RARA YY1 SVILP1 LYZL2 LOC105376479
GH10F030662 0.5 Ensembl 8.2 +7.0 7012 0.2 SVILP1 LOC105376480
GH10F030699 1.3 FANTOM5 Ensembl ENCODE 8 +47.9 47912 7.6 TBP PKNOX1 CBX3 ZFP64 YBX1 RAD21 CBX5 ZNF366 SCRT2 ZNF143 ZEB1-AS1 SVILP1 LOC105376480
GH10F030726 1.3 Ensembl ENCODE 8 +71.6 71612 1.4 CTCF ZNF654 TRIM22 REST ZNF2 RAD21 SMARCA4 IKZF1 SMC3 ZNF143 SVILP1 LOC105376480 ENSG00000272914
GH10F030691 1.3 Ensembl ENCODE 7.2 +36.3 36302 1.5 RNF2 BHLHE40 MAFG RAD21 YY1 NR2F2 SMARCA4 ATF3 PBX2 NFE2 SVILP1 LOC105376480
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SVILP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SVILP1 Gene

Chromosome:
10
Start:
30,655,489 bp from pter
End:
30,717,266 bp from pter
Size:
61,778 bases
Orientation:
Plus strand

Genomic View for SVILP1 Gene

Genes around SVILP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SVILP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SVILP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SVILP1 Gene

Proteins for SVILP1 Gene

Post-translational modifications for SVILP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SVILP1 Gene

Domains & Families for SVILP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SVILP1 Gene

Function for SVILP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SVILP1 Gene

Localization for SVILP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SVILP1 Gene

Pathways & Interactions for SVILP1 Gene

SuperPathways for SVILP1 Gene

No Data Available

Interacting Proteins for SVILP1 Gene

Gene Ontology (GO) - Biological Process for SVILP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SVILP1 Gene

Transcripts for SVILP1 Gene

mRNA/cDNA for SVILP1 Gene

(9) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SVILP1 Gene

Supervillin pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SVILP1 Gene

No ASD Table

Relevant External Links for SVILP1 Gene

GeneLoc Exon Structure for
SVILP1
ECgene alternative splicing isoforms for
SVILP1

Expression for SVILP1 Gene

mRNA expression in normal human tissues for SVILP1 Gene

mRNA differential expression in normal tissues according to GTEx for SVILP1 Gene

This gene is overexpressed in Muscle - Skeletal (x12.4) and Colon - Sigmoid (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of SVILP1 Gene:

SVILP1

SOURCE GeneReport for Unigene cluster for SVILP1 Gene:

Hs.408581
genes like me logo Genes that share expression patterns with SVILP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SVILP1 Gene

Orthologs for SVILP1 Gene

Evolution for SVILP1 Gene

ENSEMBL:
Gene Tree for SVILP1 (if available)
TreeFam:
Gene Tree for SVILP1 (if available)

No data available for Orthologs for SVILP1 Gene

Paralogs for SVILP1 Gene

No data available for Paralogs for SVILP1 Gene

Variants for SVILP1 Gene

Sequence variations from dbSNP and Humsavar for SVILP1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10437404 -- 30,708,308(+) AAAAA(C/T)GTCTA intron-variant
rs10437414 -- 30,706,724(+) AACGC(A/G)GAAGC intron-variant
rs10437415 -- 30,706,903(+) TGCTA(C/G)GGTCA intron-variant
rs10437416 -- 30,707,008(+) TCCTC(C/T)GGGGC intron-variant
rs10534140 -- 30,706,554(+) TCTTT(-/TC)TCTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SVILP1 Gene

Variant ID Type Subtype PubMed ID
esv1485696 CNV insertion 17803354
esv3435320 CNV insertion 20981092
nsv1161936 CNV duplication 26073780
nsv947814 CNV duplication 23825009

Relevant External Links for SVILP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SVILP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SVILP1 Gene

Disorders for SVILP1 Gene

Relevant External Links for SVILP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SVILP1

No disorders were found for SVILP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SVILP1 Gene

Publications for SVILP1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for SVILP1 Gene

Sources for SVILP1 Gene

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