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Aliases for SVILP1 Gene

Aliases for SVILP1 Gene

  • Supervillin Pseudogene 1 2 3 5

External Ids for SVILP1 Gene

Previous GeneCards Identifiers for SVILP1 Gene

  • GC10P030953

Summaries for SVILP1 Gene

GeneCards Summary for SVILP1 Gene

SVILP1 (Supervillin Pseudogene 1) is a Pseudogene.

Additional gene information for SVILP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SVILP1 Gene

Genomics for SVILP1 Gene

GeneHancer (GH) Regulatory Elements for SVILP1 Gene

Promoters and enhancers for SVILP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I030655 Enhancer 0.2 ENCODE 550.8 -0.3 -302 0.2 SVILP1 LYZL2
GH10I030656 Enhancer 0.2 ENCODE 550.8 +1.1 1148 0.8 SVILP1 LOC105376480
GH10I030700 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 8 +48.4 48363 6.6 PKNOX1 RB1 ZFP64 YBX1 BATF KLF5 ZNF335 ZNF366 ATF7 BCLAF1 DDX10P1 ZEB1-AS1 SVILP1 LOC105376480
GH10I030691 Enhancer 0.8 Ensembl ENCODE 7.3 +36.3 36301 1.5 RNF2 CEBPB MAFG CEBPG ATF2 ATF4 CREB1 ATF7 NFE2 SVILP1 LOC105376480
GH10I030736 Enhancer 1 Ensembl ENCODE 5.2 +82.1 82062 2.9 SMAD1 BMI1 BATF KLF5 IRF4 ATF7 ETV6 FOS BCLAF1 IKZF2 SVILP1 LOC105376480 ENSG00000272914
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SVILP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SVILP1 Gene

Genomic Locations for SVILP1 Gene
chr10:30,655,489-30,717,266
(GRCh38/hg38)
Size:
61,778 bases
Orientation:
Plus strand
chr10:30,960,495-31,006,195
(GRCh37/hg19)

Genomic View for SVILP1 Gene

Genes around SVILP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SVILP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SVILP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SVILP1 Gene

Proteins for SVILP1 Gene

Post-translational modifications for SVILP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SVILP1 Gene

Domains & Families for SVILP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SVILP1 Gene

Function for SVILP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SVILP1 Gene

Localization for SVILP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SVILP1 Gene

Pathways & Interactions for SVILP1 Gene

SuperPathways for SVILP1 Gene

No Data Available

Interacting Proteins for SVILP1 Gene

Gene Ontology (GO) - Biological Process for SVILP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SVILP1 Gene

Drugs & Compounds for SVILP1 Gene

No Compound Related Data Available

Transcripts for SVILP1 Gene

mRNA/cDNA for SVILP1 Gene

(9) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SVILP1 Gene

Supervillin pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SVILP1 Gene

No ASD Table

Relevant External Links for SVILP1 Gene

GeneLoc Exon Structure for
SVILP1
ECgene alternative splicing isoforms for
SVILP1

Expression for SVILP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SVILP1 Gene

mRNA differential expression in normal tissues according to GTEx for SVILP1 Gene

This gene is overexpressed in Muscle - Skeletal (x12.4) and Colon - Sigmoid (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of SVILP1 Gene:

SVILP1

SOURCE GeneReport for Unigene cluster for SVILP1 Gene:

Hs.408581
genes like me logo Genes that share expression patterns with SVILP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SVILP1 Gene

Orthologs for SVILP1 Gene

Evolution for SVILP1 Gene

ENSEMBL:
Gene Tree for SVILP1 (if available)
TreeFam:
Gene Tree for SVILP1 (if available)

No data available for Orthologs for SVILP1 Gene

Paralogs for SVILP1 Gene

No data available for Paralogs for SVILP1 Gene

Variants for SVILP1 Gene

Sequence variations from dbSNP and Humsavar for SVILP1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000192755 -- 30,715,763(+) C/T intron_variant
rs1000197889 -- 30,692,863(+) A/G intron_variant
rs1000348004 -- 30,707,406(+) C/T intron_variant
rs1000385395 -- 30,707,371(+) G/A intron_variant
rs1000417694 -- 30,693,141(+) T/C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SVILP1 Gene

Variant ID Type Subtype PubMed ID
esv1485696 CNV insertion 17803354
esv3435320 CNV insertion 20981092
nsv1161936 CNV duplication 26073780
nsv947814 CNV duplication 23825009

Additional Variant Information for SVILP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SVILP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SVILP1 Gene

Disorders for SVILP1 Gene

Additional Disease Information for SVILP1

No disorders were found for SVILP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SVILP1 Gene

Publications for SVILP1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for SVILP1 Gene

Sources for SVILP1 Gene

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